Wall clock time and date at job start Wed Apr 1 2020 04:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 110.88494 * 2 1 4 4 C 1.54472 * 110.97480 * 123.81089 * 2 1 3 5 5 N 1.46765 * 105.54783 * 92.65795 * 4 2 1 6 6 C 1.34624 * 111.18388 * 17.05753 * 5 4 2 7 7 O 1.21276 * 124.90978 * 179.58234 * 6 5 4 8 8 C 1.51279 * 110.14650 * 359.56123 * 6 5 4 9 9 H 1.09004 * 110.48300 * 225.09193 * 8 6 5 10 10 N 1.46894 * 110.60241 * 102.50181 * 8 6 5 11 11 C 1.46904 * 111.00326 * 81.02898 * 10 8 6 12 12 C 1.50694 * 109.47342 * 179.97438 * 11 10 8 13 13 O 1.21287 * 120.00306 * 5.24626 * 12 11 10 14 14 N 1.34780 * 119.99839 * 185.23756 * 12 11 10 15 15 C 1.46497 * 119.99635 * 175.69590 * 14 12 11 16 16 C 1.50701 * 109.46864 * 90.00560 * 15 14 12 17 17 H 1.07996 * 120.00401 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00110 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00306 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99712 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46772 * 90.00236 * 20 18 16 22 22 H 1.48500 * 109.46929 * 210.00090 * 20 18 16 23 23 H 1.48498 * 109.47228 * 329.99930 * 20 18 16 24 24 C 1.39922 * 119.99898 * 355.70178 * 14 12 11 25 25 C 1.38873 * 120.07046 * 290.32127 * 24 14 12 26 26 C 1.38114 * 119.92811 * 179.72161 * 25 24 14 27 27 C 1.38285 * 120.06849 * 0.58098 * 26 25 24 28 28 C 1.38282 * 120.14007 * 359.67530 * 27 26 25 29 29 C 1.38109 * 120.07443 * 0.04445 * 28 27 26 30 30 H 1.09003 * 109.47019 * 297.64347 * 1 2 3 31 31 H 1.08998 * 109.47681 * 57.63648 * 1 2 3 32 32 H 1.08996 * 109.47446 * 177.64087 * 1 2 3 33 33 H 1.09001 * 109.47050 * 177.42282 * 3 2 1 34 34 H 1.09000 * 109.47123 * 297.41958 * 3 2 1 35 35 H 1.08993 * 109.47003 * 57.42295 * 3 2 1 36 36 H 1.08994 * 110.25244 * 211.70072 * 4 2 1 37 37 H 1.09003 * 110.24714 * 333.61818 * 4 2 1 38 38 H 0.97007 * 124.34925 * 197.08541 * 5 4 2 39 39 H 1.00900 * 111.00269 * 204.98577 * 10 8 6 40 40 H 1.08996 * 109.46997 * 300.00753 * 11 10 8 41 41 H 1.09005 * 109.46470 * 59.99791 * 11 10 8 42 42 H 1.09002 * 109.47003 * 210.00349 * 15 14 12 43 43 H 1.09000 * 109.47596 * 330.00746 * 15 14 12 44 44 H 0.97007 * 120.00187 * 179.97438 * 19 18 16 45 45 H 1.07999 * 120.03652 * 359.97438 * 25 24 14 46 46 H 1.07997 * 119.96747 * 180.29647 * 26 25 24 47 47 H 1.07999 * 119.92805 * 179.69604 * 27 26 25 48 48 H 1.08003 * 119.95975 * 180.02562 * 28 27 26 49 49 H 1.07994 * 120.03602 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0829 -0.8026 1.1984 5 7 2.2849 -2.1675 0.6982 6 6 2.2954 -2.1958 -0.6477 7 8 2.4518 -3.1931 -1.3198 8 6 2.0833 -0.8034 -1.1998 9 1 1.3582 -0.8220 -2.0134 10 7 3.3554 -0.2303 -1.6595 11 6 3.7021 -0.7246 -2.9987 12 6 5.0095 -0.1159 -3.4359 13 8 5.6421 0.5782 -2.6684 14 7 5.4759 -0.3430 -4.6799 15 6 6.6976 0.3238 -5.1370 16 6 7.8919 -0.5333 -4.8050 17 1 7.7547 -1.4797 -4.3032 18 6 9.1599 -0.1092 -5.1418 19 7 10.2021 -0.8573 -4.8525 20 14 9.3973 1.5276 -6.0103 21 1 9.5750 2.6023 -5.0010 22 1 10.6014 1.4581 -6.8767 23 1 8.2043 1.8234 -6.8436 24 6 4.7932 -1.2154 -5.5346 25 6 4.7843 -2.5795 -5.2743 26 6 4.1046 -3.4373 -6.1167 27 6 3.4435 -2.9406 -7.2251 28 6 3.4550 -1.5834 -7.4900 29 6 4.1279 -0.7197 -6.6483 30 1 -0.3633 0.4768 0.9104 31 1 -0.3634 0.5501 -0.8680 32 1 -0.3634 -1.0267 -0.0423 33 1 3.1641 1.4030 0.0462 34 1 1.7628 1.9377 -0.9122 35 1 1.6880 1.9662 0.8659 36 1 3.0303 -0.3789 1.5314 37 1 1.3625 -0.8035 2.0164 38 1 2.3959 -2.9472 1.2646 39 1 3.3246 0.7781 -1.6430 40 1 3.7972 -1.8101 -2.9719 41 1 2.9183 -0.4458 -3.7030 42 1 6.6474 0.4748 -6.2153 43 1 6.7932 1.2886 -4.6390 44 1 11.0941 -0.5590 -5.0898 45 1 5.3048 -2.9687 -4.4118 46 1 4.0933 -4.4977 -5.9122 47 1 2.9169 -3.6140 -7.8850 48 1 2.9373 -1.1986 -8.3562 49 1 4.1368 0.3401 -6.8560 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931663175.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:10 Heat of formation + Delta-G solvation = -22.830328 kcal Electronic energy + Delta-G solvation = -31193.600754 eV Core-core repulsion = 27121.075455 eV Total energy + Delta-G solvation = -4072.525299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.98231 -39.88087 -38.14382 -37.28906 -35.28069 -34.67739 -33.13792 -32.54459 -30.68466 -29.68445 -28.72903 -27.99916 -27.25657 -26.08688 -24.87931 -22.55705 -22.36837 -21.81071 -20.38788 -19.90361 -18.97034 -17.52310 -17.07428 -16.92173 -16.46040 -16.11829 -15.86074 -15.40207 -15.09232 -14.99707 -14.60052 -14.20571 -14.06455 -14.03855 -13.85948 -13.59906 -13.38949 -13.13321 -13.07425 -12.84074 -12.47650 -12.40320 -12.30061 -12.23471 -11.95248 -11.79545 -11.65965 -11.32483 -11.29207 -11.13407 -10.98372 -10.81311 -10.55639 -10.19399 -9.95737 -9.54144 -9.34163 -9.21097 -8.70088 -8.63666 -8.56755 -8.42769 -7.71948 -6.05859 -4.04549 1.56364 1.67081 2.46994 3.22322 3.23033 3.29563 3.34920 3.36005 3.53688 3.93796 4.04008 4.11784 4.22594 4.40669 4.45636 4.75174 4.85798 4.95409 5.13546 5.15263 5.18248 5.22190 5.25702 5.27255 5.37766 5.40871 5.43705 5.51516 5.57531 5.63804 5.68837 5.73435 5.78838 5.84421 6.01161 6.03303 6.28280 6.54355 6.64071 6.67604 6.70324 6.76383 6.80794 6.88696 6.92055 7.10386 7.22736 7.35853 7.60282 8.18590 8.21308 8.47554 8.86202 8.98747 9.52989 11.07619 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010394 B = 0.003628 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.120462 B = 7715.349251 C = 9060.901945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.077 4.077 3 C -0.148 4.148 4 C 0.115 3.885 5 N -0.727 5.727 6 C 0.535 3.465 7 O -0.528 6.528 8 C 0.061 3.939 9 H 0.078 0.922 10 N -0.652 5.652 11 C 0.038 3.962 12 C 0.516 3.484 13 O -0.512 6.512 14 N -0.557 5.557 15 C 0.220 3.780 16 C -0.526 4.526 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.896 5.896 20 Si 0.874 3.126 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.266 1.266 24 C 0.157 3.843 25 C -0.112 4.112 26 C -0.107 4.107 27 C -0.131 4.131 28 C -0.113 4.113 29 C -0.128 4.128 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.409 0.591 39 H 0.360 0.640 40 H 0.109 0.891 41 H 0.057 0.943 42 H 0.032 0.968 43 H 0.039 0.961 44 H 0.264 0.736 45 H 0.126 0.874 46 H 0.123 0.877 47 H 0.119 0.881 48 H 0.121 0.879 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.465 1.652 6.391 24.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.078 4.078 3 C -0.205 4.205 4 C -0.010 4.010 5 N -0.383 5.383 6 C 0.320 3.680 7 O -0.402 6.402 8 C -0.053 4.053 9 H 0.095 0.905 10 N -0.291 5.291 11 C -0.094 4.094 12 C 0.303 3.697 13 O -0.386 6.386 14 N -0.286 5.286 15 C 0.101 3.899 16 C -0.565 4.565 17 H 0.094 0.906 18 C -0.128 4.128 19 N -0.534 5.534 20 Si 0.701 3.299 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.191 1.191 24 C 0.065 3.935 25 C -0.132 4.132 26 C -0.126 4.126 27 C -0.149 4.149 28 C -0.132 4.132 29 C -0.147 4.147 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.248 0.752 39 H 0.185 0.815 40 H 0.127 0.873 41 H 0.075 0.925 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.144 0.856 46 H 0.140 0.860 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -22.414 1.192 6.703 23.425 hybrid contribution -0.071 0.796 -0.789 1.123 sum -22.485 1.988 5.914 23.334 Atomic orbital electron populations 1.21828 0.92676 1.02346 1.02737 1.21631 0.96119 0.96173 0.93903 1.21837 1.02823 0.93299 1.02561 1.22164 1.01296 0.81551 0.95940 1.46116 1.74431 1.10253 1.07545 1.20716 0.74462 0.90274 0.82570 1.90746 1.49205 1.37471 1.62799 1.22271 0.92248 0.93311 0.97469 0.90470 1.60023 1.29229 1.14277 1.25532 1.22000 0.95302 1.02672 0.89398 1.20206 0.86700 0.81606 0.81221 1.90687 1.58814 1.38547 1.50596 1.45583 1.26426 1.44273 1.12352 1.19770 0.81450 0.93863 0.94786 1.21264 0.89351 1.06619 1.39220 0.90621 1.24823 0.95703 0.96944 0.95379 1.69892 0.98584 1.37696 1.47226 0.86884 0.78087 0.84793 0.80139 1.19856 1.20985 1.19111 1.17696 0.93995 0.89446 0.92355 1.21449 0.98771 0.92299 1.00686 1.21020 0.97274 0.99551 0.94707 1.21080 1.00669 0.95387 0.97758 1.20932 0.99736 0.93421 0.99090 1.21265 0.97924 1.00100 0.95434 0.91475 0.91810 0.92325 0.90046 0.91910 0.91446 0.90281 0.90439 0.75189 0.81540 0.87284 0.92514 0.95014 0.94309 0.92560 0.85646 0.85950 0.86327 0.86147 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.49 37.16 0.32 -0.51 16 2 C -0.08 -0.60 0.98 -152.88 -0.15 -0.75 16 3 C -0.15 -1.06 7.28 37.16 0.27 -0.79 16 4 C 0.12 0.87 6.89 -3.13 -0.02 0.85 16 5 N -0.73 -7.35 6.26 -59.16 -0.37 -7.72 16 6 C 0.54 7.35 7.82 -10.77 -0.08 7.26 16 7 O -0.53 -9.36 17.35 5.56 0.10 -9.26 16 8 C 0.06 0.69 2.68 -67.73 -0.18 0.51 16 9 H 0.08 0.85 7.73 -51.93 -0.40 0.44 16 10 N -0.65 -9.29 5.53 -108.01 -0.60 -9.89 16 11 C 0.04 0.63 4.71 -4.98 -0.02 0.61 16 12 C 0.52 10.79 7.58 -10.99 -0.08 10.71 16 13 O -0.51 -12.44 15.89 5.55 0.09 -12.36 16 14 N -0.56 -12.01 2.50 -114.74 -0.29 -12.30 16 15 C 0.22 5.51 4.15 -5.19 -0.02 5.49 16 16 C -0.53 -15.52 9.94 -34.44 -0.34 -15.86 16 17 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 18 C 0.07 2.20 5.47 -17.82 -0.10 2.10 16 19 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 20 Si 0.87 21.79 27.47 -169.99 -4.67 17.12 16 21 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 24 C 0.16 2.92 4.30 -83.69 -0.36 2.56 16 25 C -0.11 -2.00 8.63 -39.39 -0.34 -2.34 16 26 C -0.11 -1.57 10.04 -39.61 -0.40 -1.97 16 27 C -0.13 -1.70 10.04 -39.55 -0.40 -2.10 16 28 C -0.11 -1.50 10.04 -39.61 -0.40 -1.89 16 29 C -0.13 -2.01 9.75 -39.39 -0.38 -2.39 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.74 6.85 -51.93 -0.36 0.39 16 34 H 0.06 0.43 7.93 -51.93 -0.41 0.02 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.64 7.84 -51.93 -0.41 0.23 16 37 H 0.08 0.39 7.91 -51.93 -0.41 -0.02 16 38 H 0.41 3.50 8.96 -40.82 -0.37 3.13 16 39 H 0.36 4.73 5.66 -39.29 -0.22 4.51 16 40 H 0.11 1.96 6.38 -51.93 -0.33 1.63 16 41 H 0.06 0.82 7.98 -51.93 -0.41 0.40 16 42 H 0.03 0.77 6.96 -51.93 -0.36 0.41 16 43 H 0.04 1.00 6.91 -51.93 -0.36 0.64 16 44 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 45 H 0.13 2.41 8.06 -52.49 -0.42 1.98 16 46 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 47 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 48 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 49 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 398.83 15.07 6.01 6.01 Total: -1.00 -36.99 398.83 -9.09 -46.08 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.44 Total: 8.22 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -2.70 Total: 1.47 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.48 Total: -57.29 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.18 Total: -21.62 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.99 -9.09 -46.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931663175.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.247 kcal (2) G-P(sol) polarization free energy of solvation -36.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds