Wall clock time and date at job start Wed Apr 1 2020 04:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 110.88494 * 2 1 4 4 C 1.54472 * 110.97480 * 123.81089 * 2 1 3 5 5 N 1.46765 * 105.54783 * 92.65795 * 4 2 1 6 6 C 1.34624 * 111.18388 * 17.05753 * 5 4 2 7 7 O 1.21276 * 124.90978 * 179.58234 * 6 5 4 8 8 C 1.51279 * 110.14650 * 359.56123 * 6 5 4 9 9 H 1.09004 * 110.48300 * 225.09193 * 8 6 5 10 10 N 1.46894 * 110.60241 * 102.50181 * 8 6 5 11 11 C 1.46904 * 111.00326 * 81.02898 * 10 8 6 12 12 C 1.50694 * 109.47342 * 179.97438 * 11 10 8 13 13 O 1.21287 * 120.00306 * 5.24626 * 12 11 10 14 14 N 1.34780 * 119.99839 * 185.23756 * 12 11 10 15 15 C 1.46497 * 119.99635 * 175.69590 * 14 12 11 16 16 C 1.50701 * 109.46864 * 90.00560 * 15 14 12 17 17 H 1.07996 * 120.00401 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00110 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00306 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99712 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46772 * 90.00236 * 20 18 16 22 22 H 1.48500 * 109.46929 * 210.00090 * 20 18 16 23 23 H 1.48498 * 109.47228 * 329.99930 * 20 18 16 24 24 C 1.39922 * 119.99898 * 355.70178 * 14 12 11 25 25 C 1.38873 * 120.07046 * 290.32127 * 24 14 12 26 26 C 1.38114 * 119.92811 * 179.72161 * 25 24 14 27 27 C 1.38285 * 120.06849 * 0.58098 * 26 25 24 28 28 C 1.38282 * 120.14007 * 359.67530 * 27 26 25 29 29 C 1.38109 * 120.07443 * 0.04445 * 28 27 26 30 30 H 1.09003 * 109.47019 * 297.64347 * 1 2 3 31 31 H 1.08998 * 109.47681 * 57.63648 * 1 2 3 32 32 H 1.08996 * 109.47446 * 177.64087 * 1 2 3 33 33 H 1.09001 * 109.47050 * 177.42282 * 3 2 1 34 34 H 1.09000 * 109.47123 * 297.41958 * 3 2 1 35 35 H 1.08993 * 109.47003 * 57.42295 * 3 2 1 36 36 H 1.08994 * 110.25244 * 211.70072 * 4 2 1 37 37 H 1.09003 * 110.24714 * 333.61818 * 4 2 1 38 38 H 0.97007 * 124.34925 * 197.08541 * 5 4 2 39 39 H 1.00900 * 111.00269 * 204.98577 * 10 8 6 40 40 H 1.08996 * 109.46997 * 300.00753 * 11 10 8 41 41 H 1.09005 * 109.46470 * 59.99791 * 11 10 8 42 42 H 1.09002 * 109.47003 * 210.00349 * 15 14 12 43 43 H 1.09000 * 109.47596 * 330.00746 * 15 14 12 44 44 H 0.97007 * 120.00187 * 179.97438 * 19 18 16 45 45 H 1.07999 * 120.03652 * 359.97438 * 25 24 14 46 46 H 1.07997 * 119.96747 * 180.29647 * 26 25 24 47 47 H 1.07999 * 119.92805 * 179.69604 * 27 26 25 48 48 H 1.08003 * 119.95975 * 180.02562 * 28 27 26 49 49 H 1.07994 * 120.03602 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0829 -0.8026 1.1984 5 7 2.2849 -2.1675 0.6982 6 6 2.2954 -2.1958 -0.6477 7 8 2.4518 -3.1931 -1.3198 8 6 2.0833 -0.8034 -1.1998 9 1 1.3582 -0.8220 -2.0134 10 7 3.3554 -0.2303 -1.6595 11 6 3.7021 -0.7246 -2.9987 12 6 5.0095 -0.1159 -3.4359 13 8 5.6421 0.5782 -2.6684 14 7 5.4759 -0.3430 -4.6799 15 6 6.6976 0.3238 -5.1370 16 6 7.8919 -0.5333 -4.8050 17 1 7.7547 -1.4797 -4.3032 18 6 9.1599 -0.1092 -5.1418 19 7 10.2021 -0.8573 -4.8525 20 14 9.3973 1.5276 -6.0103 21 1 9.5750 2.6023 -5.0010 22 1 10.6014 1.4581 -6.8767 23 1 8.2043 1.8234 -6.8436 24 6 4.7932 -1.2154 -5.5346 25 6 4.7843 -2.5795 -5.2743 26 6 4.1046 -3.4373 -6.1167 27 6 3.4435 -2.9406 -7.2251 28 6 3.4550 -1.5834 -7.4900 29 6 4.1279 -0.7197 -6.6483 30 1 -0.3633 0.4768 0.9104 31 1 -0.3634 0.5501 -0.8680 32 1 -0.3634 -1.0267 -0.0423 33 1 3.1641 1.4030 0.0462 34 1 1.7628 1.9377 -0.9122 35 1 1.6880 1.9662 0.8659 36 1 3.0303 -0.3789 1.5314 37 1 1.3625 -0.8035 2.0164 38 1 2.3959 -2.9472 1.2646 39 1 3.3246 0.7781 -1.6430 40 1 3.7972 -1.8101 -2.9719 41 1 2.9183 -0.4458 -3.7030 42 1 6.6474 0.4748 -6.2153 43 1 6.7932 1.2886 -4.6390 44 1 11.0941 -0.5590 -5.0898 45 1 5.3048 -2.9687 -4.4118 46 1 4.0933 -4.4977 -5.9122 47 1 2.9169 -3.6140 -7.8850 48 1 2.9373 -1.1986 -8.3562 49 1 4.1368 0.3401 -6.8560 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931663175.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:09 Heat of formation + Delta-G solvation = -51.078788 kcal Electronic energy + Delta-G solvation = -31194.825699 eV Core-core repulsion = 27121.075455 eV Total energy + Delta-G solvation = -4073.750244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.95732 -41.33013 -39.54266 -38.32049 -36.71470 -36.03326 -34.77077 -33.96513 -31.90021 -31.35374 -30.07267 -28.86714 -28.46635 -26.77205 -26.18216 -24.26795 -23.67008 -23.30500 -21.35656 -20.83427 -20.29671 -19.15692 -18.69530 -18.20060 -17.71905 -17.53010 -17.03347 -16.77510 -16.34357 -16.25953 -15.90490 -15.55912 -15.29560 -15.21090 -14.89931 -14.70848 -14.47935 -14.38858 -14.32586 -14.24737 -13.96473 -13.76999 -13.51883 -13.33396 -13.04661 -12.96626 -12.82817 -12.57223 -12.36235 -12.33468 -12.23293 -11.98323 -11.96945 -11.83382 -11.77469 -10.99889 -10.95999 -10.86312 -10.12864 -10.09366 -9.86451 -9.63128 -9.28978 -8.36527 -6.42970 0.31681 0.47151 1.29657 1.34724 1.38304 1.43351 1.57133 2.03987 2.28523 2.40338 2.82275 2.97181 3.05675 3.25585 3.31883 3.54203 3.77742 3.98645 4.03002 4.08503 4.11259 4.25801 4.28619 4.34370 4.35408 4.56047 4.56396 4.63059 4.67154 4.78047 4.79890 4.83860 4.83944 4.99107 5.02543 5.09806 5.11124 5.30297 5.36713 5.37256 5.44233 5.50477 5.58056 5.59575 5.70192 5.79570 5.97931 6.02477 6.17345 6.18500 6.57130 6.60068 7.13288 7.20685 7.26129 8.81145 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010394 B = 0.003628 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.120462 B = 7715.349251 C = 9060.901945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.067 4.067 3 C -0.145 4.145 4 C 0.110 3.890 5 N -0.717 5.717 6 C 0.520 3.480 7 O -0.580 6.580 8 C 0.059 3.941 9 H 0.085 0.915 10 N -0.664 5.664 11 C 0.060 3.940 12 C 0.508 3.492 13 O -0.557 6.557 14 N -0.561 5.561 15 C 0.231 3.769 16 C -0.538 4.538 17 H 0.019 0.981 18 C 0.011 3.989 19 N -0.946 5.946 20 Si 0.952 3.048 21 H -0.269 1.269 22 H -0.273 1.273 23 H -0.236 1.236 24 C 0.121 3.879 25 C -0.138 4.138 26 C -0.111 4.111 27 C -0.116 4.116 28 C -0.100 4.100 29 C -0.130 4.130 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.416 0.584 39 H 0.366 0.634 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.031 0.969 44 H 0.269 0.731 45 H 0.089 0.911 46 H 0.139 0.861 47 H 0.160 0.840 48 H 0.164 0.836 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.904 3.624 4.742 27.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.068 4.068 3 C -0.203 4.203 4 C -0.014 4.014 5 N -0.371 5.371 6 C 0.305 3.695 7 O -0.459 6.459 8 C -0.054 4.054 9 H 0.102 0.898 10 N -0.304 5.304 11 C -0.072 4.072 12 C 0.297 3.703 13 O -0.435 6.435 14 N -0.288 5.288 15 C 0.111 3.889 16 C -0.577 4.577 17 H 0.037 0.963 18 C -0.187 4.187 19 N -0.586 5.586 20 Si 0.773 3.227 21 H -0.194 1.194 22 H -0.198 1.198 23 H -0.159 1.159 24 C 0.031 3.969 25 C -0.158 4.158 26 C -0.129 4.129 27 C -0.133 4.133 28 C -0.118 4.118 29 C -0.149 4.149 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.255 0.745 39 H 0.192 0.808 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.078 0.922 45 H 0.107 0.893 46 H 0.157 0.843 47 H 0.178 0.822 48 H 0.181 0.819 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -25.908 3.157 5.080 26.590 hybrid contribution 0.973 0.013 -0.206 0.995 sum -24.935 3.170 4.874 25.604 Atomic orbital electron populations 1.21822 0.90555 1.02383 1.04316 1.21693 0.97533 0.95890 0.91635 1.21817 1.01297 0.93103 1.04044 1.22445 1.02228 0.79809 0.96904 1.46196 1.72535 1.11806 1.06599 1.21231 0.74083 0.90554 0.83626 1.90706 1.51799 1.39263 1.64175 1.22375 0.91081 0.92696 0.99215 0.89756 1.59931 1.31403 1.14852 1.24225 1.21711 0.93383 1.00898 0.91201 1.21022 0.87812 0.80804 0.80646 1.90639 1.60402 1.40706 1.51745 1.45519 1.25628 1.44451 1.13247 1.19428 0.81352 0.92722 0.95447 1.21460 0.91922 1.05329 1.38954 0.96290 1.25908 0.94940 1.01730 0.96142 1.70065 0.99380 1.40326 1.48827 0.85662 0.79397 0.78440 0.79159 1.19449 1.19844 1.15942 1.17947 0.96080 0.89126 0.93747 1.21336 1.00511 0.93016 1.00897 1.21277 0.96786 1.00030 0.94810 1.21562 0.98890 0.96174 0.96718 1.21413 0.98115 0.93063 0.99214 1.21455 0.97708 1.01313 0.94420 0.89042 0.91207 0.92962 0.92428 0.91422 0.88853 0.90751 0.86683 0.74465 0.80761 0.89236 0.90058 0.93265 0.95064 0.92168 0.89314 0.84308 0.82196 0.81893 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.49 71.98 0.61 -0.57 16 2 C -0.07 -0.92 0.98 -51.12 -0.05 -0.97 16 3 C -0.15 -1.83 7.28 71.98 0.52 -1.30 16 4 C 0.11 1.48 6.89 86.83 0.60 2.08 16 5 N -0.72 -14.39 6.26 -459.55 -2.87 -17.27 16 6 C 0.52 14.76 7.82 87.86 0.69 15.45 16 7 O -0.58 -21.91 17.35 -3.02 -0.05 -21.96 16 8 C 0.06 1.36 2.68 44.91 0.12 1.48 16 9 H 0.08 1.80 7.73 -2.38 -0.02 1.78 16 10 N -0.66 -19.66 5.53 -495.62 -2.74 -22.40 16 11 C 0.06 2.08 4.71 85.55 0.40 2.49 16 12 C 0.51 22.59 7.58 87.65 0.66 23.26 16 13 O -0.56 -28.79 15.89 -3.05 -0.05 -28.84 16 14 N -0.56 -25.34 2.50 -635.31 -1.59 -26.93 16 15 C 0.23 11.89 4.15 85.63 0.36 12.25 16 16 C -0.54 -33.65 9.94 25.60 0.25 -33.39 16 17 H 0.02 1.35 8.06 -2.91 -0.02 1.32 16 18 C 0.01 0.65 5.47 84.66 0.46 1.12 16 19 N -0.95 -62.19 13.96 21.45 0.30 -61.89 16 20 Si 0.95 45.38 27.47 68.60 1.88 47.26 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 24 C 0.12 4.63 4.30 38.15 0.16 4.80 16 25 C -0.14 -5.22 8.63 22.39 0.19 -5.03 16 26 C -0.11 -3.20 10.04 22.25 0.22 -2.97 16 27 C -0.12 -2.59 10.04 22.29 0.22 -2.37 16 28 C -0.10 -2.24 10.04 22.25 0.22 -2.01 16 29 C -0.13 -3.84 9.75 22.39 0.22 -3.62 16 30 H 0.09 0.41 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 1.03 6.85 -2.39 -0.02 1.01 16 34 H 0.07 0.80 7.93 -2.39 -0.02 0.78 16 35 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 1.13 7.84 -2.39 -0.02 1.11 16 37 H 0.12 0.76 7.91 -2.39 -0.02 0.74 16 38 H 0.42 7.12 8.96 -92.70 -0.83 6.29 16 39 H 0.37 9.87 5.66 -89.69 -0.51 9.37 16 40 H 0.09 3.51 6.38 -2.39 -0.02 3.50 16 41 H 0.08 2.37 7.98 -2.38 -0.02 2.35 16 42 H 0.05 2.35 6.96 -2.39 -0.02 2.33 16 43 H 0.03 1.65 6.91 -2.39 -0.02 1.63 16 44 H 0.27 16.33 8.31 -92.70 -0.77 15.56 16 45 H 0.09 3.89 8.06 -2.91 -0.02 3.86 16 46 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 47 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 48 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 49 H 0.13 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -89.35 398.83 0.33 -89.01 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -0.42 Total: 32.32 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 5.88 Total: 10.69 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -6.90 Total: -128.48 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -0.10 Total: -50.80 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.88 Total: 47.26 kcal Total: -89.35 0.33 -89.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931663175.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.934 kcal (2) G-P(sol) polarization free energy of solvation -89.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds