Wall clock time and date at job start Wed Apr 1 2020 04:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 110.88832 * 2 1 4 4 C 1.54480 * 110.96890 * 236.18550 * 2 1 3 5 5 N 1.46763 * 105.47720 * 267.30023 * 4 2 1 6 6 C 1.34420 * 111.29763 * 342.98350 * 5 4 2 7 7 O 1.21281 * 124.94056 * 180.40646 * 6 5 4 8 8 C 1.51282 * 110.11774 * 0.40827 * 6 5 4 9 9 H 1.09000 * 110.59841 * 134.98725 * 8 6 5 10 10 N 1.46896 * 110.48537 * 257.57253 * 8 6 5 11 11 C 1.46905 * 110.99975 * 269.77270 * 10 8 6 12 12 C 1.50707 * 109.46978 * 179.97438 * 11 10 8 13 13 O 1.21287 * 119.99887 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99816 * 180.02562 * 12 11 10 15 15 C 1.46495 * 120.00082 * 4.73626 * 14 12 11 16 16 C 1.50703 * 109.47223 * 269.99950 * 15 14 12 17 17 H 1.08001 * 119.99957 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00261 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00025 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00125 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47397 * 89.99586 * 20 18 16 22 22 H 1.48498 * 109.47207 * 209.99979 * 20 18 16 23 23 H 1.48505 * 109.46751 * 329.99826 * 20 18 16 24 24 C 1.39925 * 120.00092 * 184.73307 * 14 12 11 25 25 C 1.38873 * 120.06829 * 68.08747 * 24 14 12 26 26 C 1.38109 * 119.92874 * 180.25429 * 25 24 14 27 27 C 1.38283 * 120.06990 * 359.51899 * 26 25 24 28 28 C 1.38277 * 120.14168 * 0.27288 * 27 26 25 29 29 C 1.38114 * 120.06988 * 359.95593 * 28 27 26 30 30 H 1.08998 * 109.47261 * 296.19380 * 1 2 3 31 31 H 1.09001 * 109.46914 * 56.18720 * 1 2 3 32 32 H 1.08994 * 109.47587 * 176.19205 * 1 2 3 33 33 H 1.08997 * 109.47338 * 183.80940 * 3 2 1 34 34 H 1.09001 * 109.47100 * 303.80775 * 3 2 1 35 35 H 1.09001 * 109.47449 * 63.80760 * 3 2 1 36 36 H 1.08999 * 110.24411 * 26.30515 * 4 2 1 37 37 H 1.09000 * 110.24358 * 148.20888 * 4 2 1 38 38 H 0.96994 * 124.35457 * 162.98184 * 5 4 2 39 39 H 1.00901 * 111.00310 * 33.73110 * 10 8 6 40 40 H 1.09002 * 109.47191 * 60.00486 * 11 10 8 41 41 H 1.08997 * 109.47011 * 300.00113 * 11 10 8 42 42 H 1.08998 * 109.47725 * 29.99950 * 15 14 12 43 43 H 1.09005 * 109.47613 * 150.00248 * 15 14 12 44 44 H 0.97001 * 120.00390 * 180.02562 * 19 18 16 45 45 H 1.08007 * 120.03713 * 0.04887 * 25 24 14 46 46 H 1.08001 * 119.96473 * 179.78971 * 26 25 24 47 47 H 1.08003 * 119.92459 * 180.25425 * 27 26 25 48 48 H 1.07998 * 119.96343 * 179.97438 * 28 27 26 49 49 H 1.08005 * 120.03661 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0828 -0.8028 -1.1985 5 7 2.2852 -2.1669 -0.6963 6 6 2.2954 -2.1959 0.6476 7 8 2.4518 -3.1932 1.3196 8 6 2.0833 -0.8035 1.1997 9 1 1.3592 -0.8201 2.0143 10 7 3.3570 -0.2324 1.6574 11 6 3.5988 -0.5504 3.0710 12 6 4.9116 0.0500 3.5036 13 8 5.5798 0.6812 2.7122 14 7 5.3432 -0.1143 4.7697 15 6 4.5892 -0.9623 5.6963 16 6 3.5651 -0.1274 6.4211 17 1 3.4843 0.9292 6.2127 18 6 2.7313 -0.7125 7.3504 19 7 1.8379 0.0161 7.9832 20 14 2.8714 -2.5399 7.7114 21 1 3.8419 -2.7535 8.8150 22 1 1.5427 -3.0688 8.1114 23 1 3.3412 -3.2502 6.4948 24 6 6.5115 0.5248 5.1992 25 6 6.5421 1.9075 5.3252 26 6 7.6983 2.5358 5.7443 27 6 8.8217 1.7889 6.0480 28 6 8.7932 0.4116 5.9277 29 6 7.6415 -0.2224 5.5046 30 1 -0.3634 0.4536 0.9221 31 1 -0.3633 0.5719 -0.8539 32 1 -0.3634 -1.0253 -0.0682 33 1 3.1630 1.4033 -0.0683 34 1 1.6708 1.9727 -0.8539 35 1 1.7812 1.9306 0.9221 36 1 1.3617 -0.8048 -2.0159 37 1 3.0294 -0.3780 -1.5325 38 1 2.3971 -2.9472 -1.2614 39 1 4.1224 -0.5466 1.0800 40 1 3.6348 -1.6323 3.1991 41 1 2.7929 -0.1392 3.6789 42 1 4.0855 -1.7517 5.1386 43 1 5.2726 -1.4076 6.4195 44 1 1.2515 -0.3954 8.6373 45 1 5.6636 2.4911 5.0924 46 1 7.7238 3.6114 5.8392 47 1 9.7234 2.2823 6.3795 48 1 9.6724 -0.1689 6.1653 49 1 7.6199 -1.2981 5.4105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931663176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:14 Heat of formation + Delta-G solvation = -29.126519 kcal Electronic energy + Delta-G solvation = -31122.431983 eV Core-core repulsion = 27049.633661 eV Total energy + Delta-G solvation = -4072.798322 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.95350 -39.88453 -38.01369 -37.16988 -35.20551 -34.76016 -33.10932 -32.58984 -30.54030 -30.06617 -28.16535 -27.56630 -27.39287 -25.96434 -24.79056 -22.83184 -22.06503 -21.74937 -20.69996 -19.64673 -18.85443 -17.35622 -17.10178 -17.02002 -16.45586 -15.98996 -15.78007 -15.51898 -15.06277 -14.69037 -14.55642 -14.20907 -14.12239 -13.93300 -13.71511 -13.48641 -13.44089 -13.06127 -12.89338 -12.53168 -12.47828 -12.16834 -12.05787 -11.99385 -11.95855 -11.82621 -11.40677 -11.39393 -11.09486 -11.00976 -10.82204 -10.78622 -10.68588 -10.31623 -10.23301 -9.68046 -9.29794 -9.26090 -8.74959 -8.63889 -8.53422 -8.28624 -7.71128 -6.23650 -4.25914 1.71044 1.80792 2.43164 3.17529 3.18655 3.21479 3.26308 3.28740 3.53730 4.12813 4.15819 4.19513 4.25986 4.42181 4.65696 4.84784 5.06388 5.18479 5.22269 5.24413 5.27836 5.31687 5.39792 5.45162 5.47078 5.62213 5.73284 5.79009 5.81873 5.92734 5.94718 5.96798 5.98695 6.06477 6.15539 6.37667 6.45535 6.50652 6.56224 6.62306 6.73414 6.79689 6.84862 6.86032 6.97395 7.12711 7.29107 7.39129 7.57290 7.96896 8.12393 8.33373 8.76975 8.84407 9.34954 10.88518 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008838 B = 0.004000 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.430959 B = 6997.789293 C = 8742.352414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.068 4.068 3 C -0.117 4.117 4 C 0.106 3.894 5 N -0.731 5.731 6 C 0.488 3.512 7 O -0.528 6.528 8 C 0.063 3.937 9 H 0.117 0.883 10 N -0.636 5.636 11 C 0.039 3.961 12 C 0.527 3.473 13 O -0.544 6.544 14 N -0.557 5.557 15 C 0.208 3.792 16 C -0.541 4.541 17 H 0.081 0.919 18 C 0.081 3.919 19 N -0.887 5.887 20 Si 0.866 3.134 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.263 1.263 24 C 0.174 3.826 25 C -0.100 4.100 26 C -0.113 4.113 27 C -0.134 4.134 28 C -0.115 4.115 29 C -0.128 4.128 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.406 0.594 39 H 0.347 0.653 40 H 0.068 0.932 41 H 0.124 0.876 42 H 0.039 0.961 43 H 0.032 0.968 44 H 0.267 0.733 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.616 0.553 -15.412 15.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.069 4.069 3 C -0.174 4.174 4 C -0.018 4.018 5 N -0.387 5.387 6 C 0.271 3.729 7 O -0.402 6.402 8 C -0.051 4.051 9 H 0.135 0.865 10 N -0.268 5.268 11 C -0.092 4.092 12 C 0.316 3.684 13 O -0.421 6.421 14 N -0.285 5.285 15 C 0.088 3.912 16 C -0.579 4.579 17 H 0.099 0.901 18 C -0.124 4.124 19 N -0.524 5.524 20 Si 0.693 3.307 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.187 1.187 24 C 0.083 3.917 25 C -0.120 4.120 26 C -0.131 4.131 27 C -0.152 4.152 28 C -0.134 4.134 29 C -0.148 4.148 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.244 0.756 39 H 0.166 0.834 40 H 0.086 0.914 41 H 0.142 0.858 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.135 0.865 48 H 0.137 0.863 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.581 1.036 -15.101 15.355 hybrid contribution 0.086 -2.379 0.198 2.389 sum 2.666 -1.344 -14.903 15.199 Atomic orbital electron populations 1.21822 0.92916 1.01940 1.02950 1.21562 0.95918 0.96853 0.92602 1.21508 1.02017 0.92266 1.01647 1.22325 1.01252 0.81290 0.96983 1.46251 1.74217 1.10516 1.07718 1.22040 0.75683 0.92169 0.82965 1.90779 1.49072 1.37519 1.62827 1.22528 0.94943 0.88881 0.98761 0.86494 1.60427 1.03067 1.60296 1.02996 1.22015 0.97492 1.00181 0.89520 1.20328 0.86658 0.80136 0.81287 1.90640 1.57374 1.41833 1.52261 1.45576 1.23251 1.48220 1.11423 1.19981 0.91886 0.90469 0.88883 1.21286 1.16624 0.97451 1.22589 0.90125 1.24817 0.94662 0.97767 0.95114 1.69876 1.20672 1.35995 1.25904 0.86991 0.78194 0.85913 0.79625 1.19836 1.20709 1.18718 1.17535 0.86106 0.91207 0.96817 1.21268 0.98313 0.93936 0.98460 1.20967 0.92877 0.99597 0.99682 1.21026 0.98327 0.94055 1.01807 1.20882 0.97414 0.94659 1.00423 1.21185 0.92288 0.99903 1.01375 0.91375 0.91746 0.92736 0.90990 0.93383 0.91424 0.90308 0.90659 0.75564 0.83433 0.91418 0.85769 0.94313 0.94954 0.92294 0.86010 0.86185 0.86478 0.86285 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.49 37.16 0.32 -0.84 16 2 C -0.07 -0.65 0.98 -152.88 -0.15 -0.80 16 3 C -0.12 -1.15 7.91 37.15 0.29 -0.85 16 4 C 0.11 0.84 6.90 -3.12 -0.02 0.81 16 5 N -0.73 -7.30 6.24 -59.20 -0.37 -7.67 16 6 C 0.49 6.86 7.76 -10.86 -0.08 6.78 16 7 O -0.53 -9.77 18.00 5.56 0.10 -9.67 16 8 C 0.06 0.81 2.67 -67.72 -0.18 0.63 16 9 H 0.12 1.62 7.59 -51.93 -0.39 1.23 16 10 N -0.64 -9.49 4.32 -108.00 -0.47 -9.95 16 11 C 0.04 0.70 4.68 -4.97 -0.02 0.68 16 12 C 0.53 10.73 7.57 -10.98 -0.08 10.65 16 13 O -0.54 -11.79 15.97 5.55 0.09 -11.70 16 14 N -0.56 -11.74 2.50 -114.74 -0.29 -12.03 16 15 C 0.21 4.69 3.95 -5.19 -0.02 4.67 16 16 C -0.54 -14.17 9.71 -34.44 -0.33 -14.51 16 17 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 18 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 19 N -0.89 -25.58 13.96 55.43 0.77 -24.81 16 20 Si 0.87 20.16 27.47 -169.99 -4.67 15.49 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 24 C 0.17 3.51 4.75 -83.69 -0.40 3.11 16 25 C -0.10 -1.92 9.56 -39.39 -0.38 -2.30 16 26 C -0.11 -1.79 10.04 -39.61 -0.40 -2.19 16 27 C -0.13 -1.94 10.04 -39.55 -0.40 -2.33 16 28 C -0.12 -1.73 10.04 -39.61 -0.40 -2.13 16 29 C -0.13 -2.26 9.69 -39.39 -0.38 -2.64 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.80 7.35 -51.93 -0.38 0.42 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.46 7.91 -51.93 -0.41 0.04 16 37 H 0.08 0.56 7.82 -51.93 -0.41 0.16 16 38 H 0.41 3.38 8.96 -40.82 -0.37 3.02 16 39 H 0.35 5.22 8.14 -39.29 -0.32 4.90 16 40 H 0.07 1.26 7.23 -51.93 -0.38 0.89 16 41 H 0.12 2.38 7.85 -51.93 -0.41 1.97 16 42 H 0.04 0.86 5.53 -51.93 -0.29 0.57 16 43 H 0.03 0.73 7.29 -51.93 -0.38 0.35 16 44 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 46 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 47 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 48 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 49 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 402.44 15.07 6.06 6.06 Total: -1.00 -32.45 402.44 -9.04 -41.50 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -7.54 Total: 11.97 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -2.73 Total: 0.81 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.35 Total: -54.46 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.19 Total: -21.37 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.45 -9.04 -41.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931663176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.371 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds