Wall clock time and date at job start Wed Apr 1 2020 04:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 110.88832 * 2 1 4 4 C 1.54480 * 110.96890 * 236.18550 * 2 1 3 5 5 N 1.46763 * 105.47720 * 267.30023 * 4 2 1 6 6 C 1.34420 * 111.29763 * 342.98350 * 5 4 2 7 7 O 1.21281 * 124.94056 * 180.40646 * 6 5 4 8 8 C 1.51282 * 110.11774 * 0.40827 * 6 5 4 9 9 H 1.09000 * 110.59841 * 134.98725 * 8 6 5 10 10 N 1.46896 * 110.48537 * 257.57253 * 8 6 5 11 11 C 1.46905 * 110.99975 * 269.77270 * 10 8 6 12 12 C 1.50707 * 109.46978 * 179.97438 * 11 10 8 13 13 O 1.21287 * 119.99887 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99816 * 180.02562 * 12 11 10 15 15 C 1.46495 * 120.00082 * 4.73626 * 14 12 11 16 16 C 1.50703 * 109.47223 * 269.99950 * 15 14 12 17 17 H 1.08001 * 119.99957 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00261 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00025 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00125 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47397 * 89.99586 * 20 18 16 22 22 H 1.48498 * 109.47207 * 209.99979 * 20 18 16 23 23 H 1.48505 * 109.46751 * 329.99826 * 20 18 16 24 24 C 1.39925 * 120.00092 * 184.73307 * 14 12 11 25 25 C 1.38873 * 120.06829 * 68.08747 * 24 14 12 26 26 C 1.38109 * 119.92874 * 180.25429 * 25 24 14 27 27 C 1.38283 * 120.06990 * 359.51899 * 26 25 24 28 28 C 1.38277 * 120.14168 * 0.27288 * 27 26 25 29 29 C 1.38114 * 120.06988 * 359.95593 * 28 27 26 30 30 H 1.08998 * 109.47261 * 296.19380 * 1 2 3 31 31 H 1.09001 * 109.46914 * 56.18720 * 1 2 3 32 32 H 1.08994 * 109.47587 * 176.19205 * 1 2 3 33 33 H 1.08997 * 109.47338 * 183.80940 * 3 2 1 34 34 H 1.09001 * 109.47100 * 303.80775 * 3 2 1 35 35 H 1.09001 * 109.47449 * 63.80760 * 3 2 1 36 36 H 1.08999 * 110.24411 * 26.30515 * 4 2 1 37 37 H 1.09000 * 110.24358 * 148.20888 * 4 2 1 38 38 H 0.96994 * 124.35457 * 162.98184 * 5 4 2 39 39 H 1.00901 * 111.00310 * 33.73110 * 10 8 6 40 40 H 1.09002 * 109.47191 * 60.00486 * 11 10 8 41 41 H 1.08997 * 109.47011 * 300.00113 * 11 10 8 42 42 H 1.08998 * 109.47725 * 29.99950 * 15 14 12 43 43 H 1.09005 * 109.47613 * 150.00248 * 15 14 12 44 44 H 0.97001 * 120.00390 * 180.02562 * 19 18 16 45 45 H 1.08007 * 120.03713 * 0.04887 * 25 24 14 46 46 H 1.08001 * 119.96473 * 179.78971 * 26 25 24 47 47 H 1.08003 * 119.92459 * 180.25425 * 27 26 25 48 48 H 1.07998 * 119.96343 * 179.97438 * 28 27 26 49 49 H 1.08005 * 120.03661 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0828 -0.8028 -1.1985 5 7 2.2852 -2.1669 -0.6963 6 6 2.2954 -2.1959 0.6476 7 8 2.4518 -3.1932 1.3196 8 6 2.0833 -0.8035 1.1997 9 1 1.3592 -0.8201 2.0143 10 7 3.3570 -0.2324 1.6574 11 6 3.5988 -0.5504 3.0710 12 6 4.9116 0.0500 3.5036 13 8 5.5798 0.6812 2.7122 14 7 5.3432 -0.1143 4.7697 15 6 4.5892 -0.9623 5.6963 16 6 3.5651 -0.1274 6.4211 17 1 3.4843 0.9292 6.2127 18 6 2.7313 -0.7125 7.3504 19 7 1.8379 0.0161 7.9832 20 14 2.8714 -2.5399 7.7114 21 1 3.8419 -2.7535 8.8150 22 1 1.5427 -3.0688 8.1114 23 1 3.3412 -3.2502 6.4948 24 6 6.5115 0.5248 5.1992 25 6 6.5421 1.9075 5.3252 26 6 7.6983 2.5358 5.7443 27 6 8.8217 1.7889 6.0480 28 6 8.7932 0.4116 5.9277 29 6 7.6415 -0.2224 5.5046 30 1 -0.3634 0.4536 0.9221 31 1 -0.3633 0.5719 -0.8539 32 1 -0.3634 -1.0253 -0.0682 33 1 3.1630 1.4033 -0.0683 34 1 1.6708 1.9727 -0.8539 35 1 1.7812 1.9306 0.9221 36 1 1.3617 -0.8048 -2.0159 37 1 3.0294 -0.3780 -1.5325 38 1 2.3971 -2.9472 -1.2614 39 1 4.1224 -0.5466 1.0800 40 1 3.6348 -1.6323 3.1991 41 1 2.7929 -0.1392 3.6789 42 1 4.0855 -1.7517 5.1386 43 1 5.2726 -1.4076 6.4195 44 1 1.2515 -0.3954 8.6373 45 1 5.6636 2.4911 5.0924 46 1 7.7238 3.6114 5.8392 47 1 9.7234 2.2823 6.3795 48 1 9.6724 -0.1689 6.1653 49 1 7.6199 -1.2981 5.4105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931663176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:13 Heat of formation + Delta-G solvation = -51.905105 kcal Electronic energy + Delta-G solvation = -31123.419737 eV Core-core repulsion = 27049.633661 eV Total energy + Delta-G solvation = -4073.786076 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.01945 -41.37926 -39.41446 -38.27690 -36.83694 -36.02680 -34.62453 -34.05470 -31.84278 -31.53799 -29.80029 -28.94439 -28.25992 -26.75902 -26.03322 -24.66870 -23.45884 -23.16232 -21.76877 -20.67214 -20.21654 -19.15215 -18.54175 -18.35122 -17.92238 -17.28969 -17.03001 -16.78170 -16.61443 -16.02389 -15.78539 -15.56221 -15.38574 -15.08156 -14.92112 -14.69735 -14.53669 -14.43720 -14.33694 -14.22182 -13.86442 -13.54198 -13.48565 -13.27623 -13.13788 -12.85553 -12.78885 -12.59120 -12.50024 -12.27658 -12.20235 -11.99725 -11.84264 -11.75204 -11.68655 -11.41413 -10.93041 -10.80840 -10.16397 -10.15213 -9.84654 -9.55054 -9.25879 -8.35039 -6.42078 0.37416 0.49387 1.29020 1.33339 1.36277 1.44170 1.54970 2.01285 2.28245 2.32887 2.83859 2.96169 2.98854 3.24098 3.42567 3.64324 3.83963 3.97387 4.03498 4.09117 4.16349 4.26633 4.37580 4.40725 4.44118 4.50992 4.57321 4.62068 4.66825 4.74568 4.80225 4.80535 4.92394 5.06610 5.11160 5.16584 5.21024 5.33688 5.36649 5.42976 5.49485 5.58559 5.60766 5.67296 5.73594 5.76136 5.91236 6.03105 6.07934 6.18462 6.42722 6.61991 7.11854 7.14245 7.24918 8.80799 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008838 B = 0.004000 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.430959 B = 6997.789293 C = 8742.352414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.061 4.061 3 C -0.112 4.112 4 C 0.107 3.893 5 N -0.711 5.711 6 C 0.483 3.517 7 O -0.580 6.580 8 C 0.056 3.944 9 H 0.100 0.900 10 N -0.629 5.629 11 C 0.052 3.948 12 C 0.522 3.478 13 O -0.559 6.559 14 N -0.559 5.559 15 C 0.219 3.781 16 C -0.537 4.537 17 H 0.035 0.965 18 C 0.028 3.972 19 N -0.934 5.934 20 Si 0.931 3.069 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.247 1.247 24 C 0.133 3.867 25 C -0.131 4.131 26 C -0.113 4.113 27 C -0.123 4.123 28 C -0.107 4.107 29 C -0.142 4.142 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.418 0.582 39 H 0.347 0.653 40 H 0.061 0.939 41 H 0.105 0.895 42 H 0.046 0.954 43 H 0.041 0.959 44 H 0.270 0.730 45 H 0.095 0.905 46 H 0.146 0.854 47 H 0.161 0.839 48 H 0.159 0.841 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 -0.164 -16.999 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.062 4.062 3 C -0.169 4.169 4 C -0.016 4.016 5 N -0.366 5.366 6 C 0.267 3.733 7 O -0.459 6.459 8 C -0.057 4.057 9 H 0.118 0.882 10 N -0.260 5.260 11 C -0.080 4.080 12 C 0.312 3.688 13 O -0.438 6.438 14 N -0.287 5.287 15 C 0.098 3.902 16 C -0.576 4.576 17 H 0.054 0.946 18 C -0.172 4.172 19 N -0.573 5.573 20 Si 0.753 3.247 21 H -0.187 1.187 22 H -0.205 1.205 23 H -0.170 1.170 24 C 0.043 3.957 25 C -0.151 4.151 26 C -0.132 4.132 27 C -0.141 4.141 28 C -0.125 4.125 29 C -0.161 4.161 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.134 0.866 37 H 0.106 0.894 38 H 0.258 0.742 39 H 0.167 0.833 40 H 0.079 0.921 41 H 0.123 0.877 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.113 0.887 46 H 0.163 0.837 47 H 0.178 0.822 48 H 0.176 0.824 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.394 0.346 -16.749 17.319 hybrid contribution -0.417 -1.982 0.647 2.126 sum 3.976 -1.636 -16.102 16.666 Atomic orbital electron populations 1.21823 0.91662 1.02254 1.03601 1.21584 0.96772 0.96394 0.91426 1.21448 1.01215 0.92506 1.01765 1.22546 1.02903 0.79400 0.96784 1.46193 1.71965 1.12056 1.06353 1.22114 0.75413 0.91574 0.84190 1.90743 1.51847 1.39043 1.64280 1.22667 0.93576 0.89610 0.99877 0.88177 1.60460 1.03957 1.60422 1.01209 1.21778 0.95634 0.99223 0.91320 1.20678 0.87080 0.79893 0.81142 1.90602 1.58017 1.42596 1.52567 1.45551 1.23795 1.48104 1.11235 1.19743 0.91259 0.90154 0.89064 1.21356 1.17585 0.95816 1.22826 0.94619 1.25629 0.94120 1.02575 0.94829 1.70017 1.21988 1.38261 1.27057 0.85963 0.78434 0.80047 0.80209 1.18656 1.20527 1.17036 1.17935 0.86662 0.91901 0.99251 1.21289 0.99076 0.93895 1.00815 1.21315 0.92180 1.01156 0.98527 1.21539 0.98962 0.93965 0.99599 1.21373 0.97483 0.95359 0.98310 1.21414 0.92512 1.00384 1.01817 0.92617 0.88972 0.92854 0.92345 0.90425 0.93715 0.86586 0.89392 0.74210 0.83339 0.92123 0.87705 0.93597 0.94062 0.92108 0.88705 0.83659 0.82152 0.82365 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.49 71.98 0.61 -1.44 16 2 C -0.06 -1.08 0.98 -51.13 -0.05 -1.13 16 3 C -0.11 -2.09 7.91 71.98 0.57 -1.53 16 4 C 0.11 1.38 6.90 86.83 0.60 1.98 16 5 N -0.71 -13.01 6.24 -459.81 -2.87 -15.88 16 6 C 0.48 13.70 7.76 87.90 0.68 14.38 16 7 O -0.58 -22.15 18.00 -3.03 -0.05 -22.21 16 8 C 0.06 1.51 2.67 44.91 0.12 1.63 16 9 H 0.10 3.01 7.59 -2.39 -0.02 2.99 16 10 N -0.63 -19.73 4.32 -495.60 -2.14 -21.87 16 11 C 0.05 2.02 4.68 85.56 0.40 2.42 16 12 C 0.52 22.52 7.57 87.66 0.66 23.18 16 13 O -0.56 -25.35 15.97 -3.05 -0.05 -25.40 16 14 N -0.56 -24.74 2.50 -635.31 -1.59 -26.33 16 15 C 0.22 10.18 3.95 85.63 0.34 10.52 16 16 C -0.54 -29.66 9.71 25.60 0.25 -29.41 16 17 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 18 C 0.03 1.58 5.47 84.66 0.46 2.04 16 19 N -0.93 -56.09 13.96 21.45 0.30 -55.79 16 20 Si 0.93 41.98 27.47 68.60 1.88 43.87 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.25 -10.43 6.54 99.48 0.65 -9.78 16 24 C 0.13 5.50 4.75 38.15 0.18 5.68 16 25 C -0.13 -5.24 9.56 22.39 0.21 -5.03 16 26 C -0.11 -3.49 10.04 22.25 0.22 -3.27 16 27 C -0.12 -3.14 10.04 22.29 0.22 -2.92 16 28 C -0.11 -2.88 10.04 22.25 0.22 -2.66 16 29 C -0.14 -4.89 9.69 22.39 0.22 -4.68 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 1.26 7.35 -2.39 -0.02 1.25 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.12 0.78 7.91 -2.39 -0.02 0.76 16 37 H 0.09 1.02 7.82 -2.39 -0.02 1.00 16 38 H 0.42 6.09 8.96 -92.71 -0.83 5.26 16 39 H 0.35 10.80 8.14 -89.69 -0.73 10.07 16 40 H 0.06 2.41 7.23 -2.39 -0.02 2.40 16 41 H 0.10 4.43 7.85 -2.39 -0.02 4.41 16 42 H 0.05 2.08 5.53 -2.39 -0.01 2.06 16 43 H 0.04 1.86 7.29 -2.38 -0.02 1.84 16 44 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 45 H 0.09 4.15 8.06 -2.91 -0.02 4.12 16 46 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 47 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 48 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 49 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -76.08 402.44 0.76 -75.32 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: -0.64 Total: 38.53 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 5.93 Total: 9.76 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -6.30 Total: -119.87 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: -0.10 Total: -47.61 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.88 Total: 43.87 kcal Total: -76.08 0.76 -75.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931663176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.413 kcal (2) G-P(sol) polarization free energy of solvation -76.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds