Wall clock time and date at job start Wed Apr 1 2020 04:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 110.77942 * 2 1 4 4 C 1.54333 * 110.71857 * 123.23110 * 2 1 3 5 5 N 1.47019 * 107.26792 * 140.55869 * 4 2 1 6 6 C 1.34777 * 125.65032 * 181.02466 * 5 4 2 7 7 O 1.21282 * 119.99919 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00482 * 180.02562 * 6 5 4 9 9 C 1.50705 * 109.47321 * 179.97438 * 8 6 5 10 10 C 1.37979 * 120.07142 * 259.45454 * 9 8 6 11 11 C 1.38333 * 120.14074 * 179.97438 * 10 9 8 12 12 C 1.38382 * 120.29369 * 0.02562 * 11 10 9 13 13 C 1.37936 * 120.14895 * 359.97438 * 12 11 10 14 14 C 1.39558 * 120.07207 * 79.43613 * 9 8 6 15 15 C 1.47845 * 120.14162 * 359.97438 * 14 9 8 16 16 N 1.34776 * 119.99401 * 174.32728 * 15 14 9 17 17 O 1.21547 * 120.00261 * 354.32341 * 15 14 9 18 18 C 1.47423 * 108.70520 * 1.28873 * 5 4 2 19 19 C 1.55127 * 104.72117 * 335.55342 * 18 5 4 20 20 H 1.09007 * 110.94040 * 155.29185 * 19 18 5 21 21 N 1.46504 * 111.19076 * 279.18831 * 19 18 5 22 22 C 1.36942 * 120.00051 * 267.18443 * 21 19 18 23 23 H 1.07994 * 120.00309 * 0.02562 * 22 21 19 24 24 C 1.38809 * 119.99721 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00132 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99820 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47177 * 90.00078 * 26 24 22 28 28 H 1.48504 * 109.46989 * 209.99941 * 26 24 22 29 29 H 1.48498 * 109.47016 * 329.99609 * 26 24 22 30 30 H 1.09002 * 109.47478 * 298.21559 * 1 2 3 31 31 H 1.08997 * 109.47101 * 58.22511 * 1 2 3 32 32 H 1.09006 * 109.47010 * 178.22132 * 1 2 3 33 33 H 1.08994 * 109.47504 * 181.78425 * 3 2 1 34 34 H 1.08998 * 109.46812 * 301.78115 * 3 2 1 35 35 H 1.08995 * 109.47315 * 61.78136 * 3 2 1 36 36 H 1.09003 * 109.88090 * 21.14355 * 4 2 1 37 37 H 1.08998 * 110.01144 * 260.04543 * 4 2 1 38 38 H 1.09008 * 109.47171 * 60.00018 * 8 6 5 39 39 H 1.08999 * 109.46959 * 300.00359 * 8 6 5 40 40 H 1.08001 * 119.93076 * 359.97438 * 10 9 8 41 41 H 1.07997 * 119.85596 * 180.02562 * 11 10 9 42 42 H 1.08001 * 119.92582 * 179.69776 * 12 11 10 43 43 H 1.07992 * 120.07870 * 179.97438 * 13 12 11 44 44 H 0.97001 * 120.00728 * 359.97438 * 16 15 14 45 45 H 0.97010 * 119.99676 * 179.97438 * 16 15 14 46 46 H 1.09000 * 110.36733 * 94.48096 * 18 5 4 47 47 H 1.09005 * 110.37021 * 216.80391 * 18 5 4 48 48 H 0.97001 * 119.99680 * 87.19687 * 21 19 18 49 49 H 0.96998 * 119.99962 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7911 1.2075 5 7 3.2445 -1.5506 0.7393 6 6 3.9923 -2.3834 1.4900 7 8 3.7192 -2.5562 2.6590 8 6 5.1678 -3.0999 0.8771 9 6 5.8305 -3.9620 1.9206 10 6 6.9809 -3.5283 2.5469 11 6 7.5901 -4.3183 3.5053 12 6 7.0512 -5.5476 3.8421 13 6 5.9015 -5.9929 3.2236 14 6 5.2816 -5.2006 2.2559 15 6 4.0486 -5.6710 1.5895 16 7 3.5845 -6.9132 1.8304 17 8 3.4534 -4.9376 0.8245 18 6 3.4666 -1.2456 -0.6858 19 6 2.0790 -0.7955 -1.2136 20 1 2.1844 -0.1521 -2.0872 21 7 1.2272 -1.9490 -1.5142 22 6 1.2023 -2.4702 -2.7803 23 1 1.8108 -2.0313 -3.5571 24 6 0.3948 -3.5627 -3.0652 25 7 -0.3464 -4.0980 -2.1184 26 14 0.3613 -4.2742 -4.7921 27 1 1.4022 -5.3262 -4.9143 28 1 -0.9744 -4.8664 -5.0576 29 1 0.6293 -3.1957 -5.7771 30 1 -0.3634 0.4859 0.9055 31 1 -0.3633 0.5411 -0.8736 32 1 -0.3633 -1.0272 -0.0319 33 1 3.1620 1.4058 -0.0320 34 1 1.6956 1.9621 -0.8736 35 1 1.7474 1.9426 0.9055 36 1 1.3129 -1.4757 1.5778 37 1 2.3735 -0.1042 1.9997 38 1 5.8840 -2.3686 0.5024 39 1 4.8230 -3.7256 0.0539 40 1 7.4068 -2.5701 2.2883 41 1 8.4901 -3.9741 3.9929 42 1 7.5344 -6.1616 4.5877 43 1 5.4822 -6.9526 3.4871 44 1 4.0596 -7.4987 2.4407 45 1 2.7752 -7.2218 1.3935 46 1 4.1947 -0.4415 -0.7927 47 1 3.8032 -2.1362 -1.2165 48 1 0.6808 -2.3433 -0.8165 49 1 -0.9110 -4.8612 -2.3176 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996108437.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:46 Heat of formation + Delta-G solvation = -26.601703 kcal Electronic energy + Delta-G solvation = -31756.937676 eV Core-core repulsion = 27684.248838 eV Total energy + Delta-G solvation = -4072.688838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.46722 -39.48715 -38.03519 -37.50456 -33.87709 -33.70140 -33.08266 -32.43084 -30.90892 -30.60145 -28.14263 -27.87531 -26.54616 -25.45097 -23.90685 -23.64323 -21.98960 -21.35583 -20.51019 -18.85246 -18.56216 -17.76158 -17.09677 -16.66497 -16.43084 -15.87620 -15.50239 -15.26743 -14.96845 -14.62330 -14.53643 -14.16551 -13.95352 -13.65912 -13.58833 -13.30277 -13.08490 -12.79980 -12.70560 -12.44470 -12.24562 -11.88166 -11.81348 -11.79918 -11.67041 -11.38241 -11.24078 -11.16859 -10.90874 -10.83518 -10.43554 -10.31009 -10.16472 -9.78090 -9.58121 -9.54600 -9.43394 -9.34291 -9.00981 -8.90557 -8.73742 -7.97736 -6.88854 -5.70644 -2.99498 0.87485 1.26699 3.00650 3.33000 3.45892 3.50632 3.52294 3.59911 3.64080 3.97038 4.61370 4.66186 4.72838 4.78145 4.89755 4.95455 5.22612 5.23584 5.32478 5.38145 5.38712 5.51829 5.56689 5.72381 5.75461 5.80726 5.84702 5.90352 5.97344 6.04115 6.11372 6.16942 6.20873 6.28452 6.31695 6.32434 6.39723 6.47054 6.49778 6.54935 6.70729 6.79323 6.81861 6.98706 6.98901 7.05714 7.48559 7.73651 8.19504 8.46290 8.49875 8.80911 9.58230 10.15598 10.50218 11.51225 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010153 B = 0.004140 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.060742 B = 6761.575165 C = 8573.441887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.091 4.091 3 C -0.130 4.130 4 C 0.126 3.874 5 N -0.599 5.599 6 C 0.556 3.444 7 O -0.559 6.559 8 C -0.106 4.106 9 C 0.001 3.999 10 C -0.120 4.120 11 C -0.096 4.096 12 C -0.133 4.133 13 C -0.088 4.088 14 C -0.118 4.118 15 C 0.551 3.449 16 N -0.855 5.855 17 O -0.502 6.502 18 C 0.068 3.932 19 C 0.180 3.820 20 H 0.071 0.929 21 N -0.705 5.705 22 C -0.243 4.243 23 H 0.070 0.930 24 C -0.007 4.007 25 N -0.924 5.924 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.282 1.282 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.394 0.606 45 H 0.407 0.593 46 H 0.052 0.948 47 H 0.079 0.921 48 H 0.388 0.612 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.620 0.799 10.466 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.092 4.092 3 C -0.188 4.188 4 C 0.003 3.997 5 N -0.332 5.332 6 C 0.345 3.655 7 O -0.438 6.438 8 C -0.145 4.145 9 C -0.001 4.001 10 C -0.138 4.138 11 C -0.114 4.114 12 C -0.151 4.151 13 C -0.107 4.107 14 C -0.121 4.121 15 C 0.336 3.664 16 N -0.420 5.420 17 O -0.377 6.377 18 C -0.058 4.058 19 C 0.067 3.933 20 H 0.089 0.911 21 N -0.344 5.344 22 C -0.374 4.374 23 H 0.088 0.912 24 C -0.203 4.203 25 N -0.572 5.572 26 Si 0.735 3.265 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.223 0.777 45 H 0.238 0.762 46 H 0.070 0.930 47 H 0.097 0.903 48 H 0.223 0.777 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.222 1.208 10.452 17.691 hybrid contribution -0.240 -1.231 -0.528 1.361 sum 13.982 -0.023 9.923 17.146 Atomic orbital electron populations 1.21625 0.93009 1.03292 1.00368 1.21927 0.96671 0.94735 0.95917 1.21744 1.00557 0.94998 1.01457 1.21890 0.87968 0.93949 0.95877 1.48136 1.29281 1.44076 1.11672 1.19557 0.82954 0.77526 0.85475 1.90626 1.71889 1.64300 1.16967 1.20821 0.95909 0.98840 0.98948 1.19479 0.93369 0.92393 0.94816 1.21014 0.95733 0.99983 0.97069 1.21257 0.99391 0.94249 0.96512 1.21022 0.96539 0.96885 1.00691 1.21214 0.95425 0.98875 0.95177 1.19770 0.96503 0.96096 0.99762 1.18317 0.84611 0.81868 0.81561 1.43730 1.31616 1.15957 1.50690 1.90963 1.57835 1.53834 1.35051 1.23436 1.01072 1.00299 0.80994 1.21359 0.88457 0.89694 0.93798 0.91075 1.42335 1.49351 1.32540 1.10203 1.19193 1.21002 1.09936 0.87288 0.91201 1.24709 0.99598 0.98697 0.97320 1.69679 1.30581 1.25442 1.31486 0.86250 0.76782 0.79052 0.84408 1.21865 1.21924 1.20789 0.93919 0.92391 0.90978 0.92822 0.92356 0.92947 0.91901 0.92689 0.89331 0.85496 0.85488 0.85687 0.85645 0.85801 0.77706 0.76205 0.93007 0.90298 0.77678 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.16 37.16 0.30 -1.86 16 2 C -0.09 -1.52 0.80 -152.67 -0.12 -1.65 16 3 C -0.13 -1.74 8.44 37.16 0.31 -1.42 16 4 C 0.13 2.33 6.03 -3.06 -0.02 2.31 16 5 N -0.60 -11.52 3.32 -170.38 -0.57 -12.09 16 6 C 0.56 11.07 6.28 -10.99 -0.07 11.00 16 7 O -0.56 -12.64 16.27 5.56 0.09 -12.55 16 8 C -0.11 -1.76 4.13 -29.03 -0.12 -1.88 16 9 C 0.00 0.01 4.46 -104.22 -0.47 -0.45 16 10 C -0.12 -1.46 9.66 -39.64 -0.38 -1.84 16 11 C -0.10 -0.97 10.04 -39.49 -0.40 -1.36 16 12 C -0.13 -1.30 10.03 -39.64 -0.40 -1.70 16 13 C -0.09 -0.99 9.53 -39.19 -0.37 -1.36 16 14 C -0.12 -1.76 5.74 -104.97 -0.60 -2.36 16 15 C 0.55 9.38 7.97 -12.33 -0.10 9.28 16 16 N -0.85 -10.68 8.82 30.53 0.27 -10.41 16 17 O -0.50 -11.06 13.07 5.32 0.07 -10.99 16 18 C 0.07 1.24 6.08 -2.41 -0.01 1.22 16 19 C 0.18 3.51 2.96 -65.67 -0.19 3.31 16 20 H 0.07 1.35 7.99 -51.92 -0.41 0.93 16 21 N -0.70 -17.45 4.57 -51.24 -0.23 -17.68 16 22 C -0.24 -6.64 9.96 -15.06 -0.15 -6.79 16 23 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 24 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 25 N -0.92 -28.19 13.06 55.49 0.72 -27.47 16 26 Si 0.90 22.45 29.55 -169.99 -5.02 17.43 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.49 6.34 -51.93 -0.33 1.16 16 33 H 0.05 0.68 7.42 -51.93 -0.39 0.30 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 1.32 7.82 -51.93 -0.41 0.91 16 37 H 0.05 0.95 7.85 -51.93 -0.41 0.54 16 38 H 0.09 1.19 8.00 -51.92 -0.42 0.77 16 39 H 0.13 2.37 5.86 -51.93 -0.30 2.07 16 40 H 0.13 1.28 8.03 -52.49 -0.42 0.86 16 41 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 43 H 0.12 0.99 6.45 -52.49 -0.34 0.65 16 44 H 0.39 3.35 6.90 -40.82 -0.28 3.06 16 45 H 0.41 5.08 8.93 -40.82 -0.36 4.71 16 46 H 0.05 0.78 7.69 -51.93 -0.40 0.38 16 47 H 0.08 1.58 7.48 -51.93 -0.39 1.19 16 48 H 0.39 10.61 6.32 -40.82 -0.26 10.35 16 49 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 393.66 15.07 5.93 5.93 Total: -1.00 -36.34 393.66 -8.82 -45.16 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -7.20 Total: 18.49 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -2.88 Total: 4.16 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: 0.19 Total: -67.64 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.16 Total: -23.54 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.34 -8.82 -45.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996108437.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.557 kcal (2) G-P(sol) polarization free energy of solvation -36.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds