Wall clock time and date at job start Wed Apr 1 2020 04:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 110.77942 * 2 1 4 4 C 1.54333 * 110.71857 * 123.23110 * 2 1 3 5 5 N 1.47019 * 107.26792 * 140.55869 * 4 2 1 6 6 C 1.34777 * 125.65032 * 181.02466 * 5 4 2 7 7 O 1.21282 * 119.99919 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00482 * 180.02562 * 6 5 4 9 9 C 1.50705 * 109.47321 * 179.97438 * 8 6 5 10 10 C 1.37979 * 120.07142 * 259.45454 * 9 8 6 11 11 C 1.38333 * 120.14074 * 179.97438 * 10 9 8 12 12 C 1.38382 * 120.29369 * 0.02562 * 11 10 9 13 13 C 1.37936 * 120.14895 * 359.97438 * 12 11 10 14 14 C 1.39558 * 120.07207 * 79.43613 * 9 8 6 15 15 C 1.47845 * 120.14162 * 359.97438 * 14 9 8 16 16 N 1.34776 * 119.99401 * 174.32728 * 15 14 9 17 17 O 1.21547 * 120.00261 * 354.32341 * 15 14 9 18 18 C 1.47423 * 108.70520 * 1.28873 * 5 4 2 19 19 C 1.55127 * 104.72117 * 335.55342 * 18 5 4 20 20 H 1.09007 * 110.94040 * 155.29185 * 19 18 5 21 21 N 1.46504 * 111.19076 * 279.18831 * 19 18 5 22 22 C 1.36942 * 120.00051 * 267.18443 * 21 19 18 23 23 H 1.07994 * 120.00309 * 0.02562 * 22 21 19 24 24 C 1.38809 * 119.99721 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00132 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99820 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47177 * 90.00078 * 26 24 22 28 28 H 1.48504 * 109.46989 * 209.99941 * 26 24 22 29 29 H 1.48498 * 109.47016 * 329.99609 * 26 24 22 30 30 H 1.09002 * 109.47478 * 298.21559 * 1 2 3 31 31 H 1.08997 * 109.47101 * 58.22511 * 1 2 3 32 32 H 1.09006 * 109.47010 * 178.22132 * 1 2 3 33 33 H 1.08994 * 109.47504 * 181.78425 * 3 2 1 34 34 H 1.08998 * 109.46812 * 301.78115 * 3 2 1 35 35 H 1.08995 * 109.47315 * 61.78136 * 3 2 1 36 36 H 1.09003 * 109.88090 * 21.14355 * 4 2 1 37 37 H 1.08998 * 110.01144 * 260.04543 * 4 2 1 38 38 H 1.09008 * 109.47171 * 60.00018 * 8 6 5 39 39 H 1.08999 * 109.46959 * 300.00359 * 8 6 5 40 40 H 1.08001 * 119.93076 * 359.97438 * 10 9 8 41 41 H 1.07997 * 119.85596 * 180.02562 * 11 10 9 42 42 H 1.08001 * 119.92582 * 179.69776 * 12 11 10 43 43 H 1.07992 * 120.07870 * 179.97438 * 13 12 11 44 44 H 0.97001 * 120.00728 * 359.97438 * 16 15 14 45 45 H 0.97010 * 119.99676 * 179.97438 * 16 15 14 46 46 H 1.09000 * 110.36733 * 94.48096 * 18 5 4 47 47 H 1.09005 * 110.37021 * 216.80391 * 18 5 4 48 48 H 0.97001 * 119.99680 * 87.19687 * 21 19 18 49 49 H 0.96998 * 119.99962 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7911 1.2075 5 7 3.2445 -1.5506 0.7393 6 6 3.9923 -2.3834 1.4900 7 8 3.7192 -2.5562 2.6590 8 6 5.1678 -3.0999 0.8771 9 6 5.8305 -3.9620 1.9206 10 6 6.9809 -3.5283 2.5469 11 6 7.5901 -4.3183 3.5053 12 6 7.0512 -5.5476 3.8421 13 6 5.9015 -5.9929 3.2236 14 6 5.2816 -5.2006 2.2559 15 6 4.0486 -5.6710 1.5895 16 7 3.5845 -6.9132 1.8304 17 8 3.4534 -4.9376 0.8245 18 6 3.4666 -1.2456 -0.6858 19 6 2.0790 -0.7955 -1.2136 20 1 2.1844 -0.1521 -2.0872 21 7 1.2272 -1.9490 -1.5142 22 6 1.2023 -2.4702 -2.7803 23 1 1.8108 -2.0313 -3.5571 24 6 0.3948 -3.5627 -3.0652 25 7 -0.3464 -4.0980 -2.1184 26 14 0.3613 -4.2742 -4.7921 27 1 1.4022 -5.3262 -4.9143 28 1 -0.9744 -4.8664 -5.0576 29 1 0.6293 -3.1957 -5.7771 30 1 -0.3634 0.4859 0.9055 31 1 -0.3633 0.5411 -0.8736 32 1 -0.3633 -1.0272 -0.0319 33 1 3.1620 1.4058 -0.0320 34 1 1.6956 1.9621 -0.8736 35 1 1.7474 1.9426 0.9055 36 1 1.3129 -1.4757 1.5778 37 1 2.3735 -0.1042 1.9997 38 1 5.8840 -2.3686 0.5024 39 1 4.8230 -3.7256 0.0539 40 1 7.4068 -2.5701 2.2883 41 1 8.4901 -3.9741 3.9929 42 1 7.5344 -6.1616 4.5877 43 1 5.4822 -6.9526 3.4871 44 1 4.0596 -7.4987 2.4407 45 1 2.7752 -7.2218 1.3935 46 1 4.1947 -0.4415 -0.7927 47 1 3.8032 -2.1362 -1.2165 48 1 0.6808 -2.3433 -0.8165 49 1 -0.9110 -4.8612 -2.3176 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996108437.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:45 Heat of formation + Delta-G solvation = -53.552028 kcal Electronic energy + Delta-G solvation = -31758.106329 eV Core-core repulsion = 27684.248838 eV Total energy + Delta-G solvation = -4073.857492 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.69602 -40.88399 -39.29058 -38.87160 -35.64369 -35.09772 -34.57367 -33.53046 -32.55344 -31.82030 -29.48403 -29.31891 -27.96042 -26.80557 -25.62669 -24.88539 -23.20638 -22.74378 -21.62698 -20.35448 -20.01299 -19.06184 -18.85579 -17.95894 -17.78544 -17.25612 -16.71540 -16.63686 -16.16227 -16.02984 -15.86160 -15.68560 -15.60429 -15.14075 -14.90034 -14.60496 -14.39603 -14.19800 -14.04626 -13.61773 -13.60166 -13.31240 -13.20228 -12.98544 -12.94458 -12.80635 -12.76157 -12.67882 -12.59087 -12.13384 -12.06764 -12.04976 -11.78293 -11.45314 -11.28838 -10.98293 -10.88361 -10.76872 -10.68566 -9.90613 -9.72446 -9.57756 -8.90737 -7.88772 -5.16740 -0.09805 0.38326 1.45557 1.48009 1.55679 1.72978 1.96598 2.21533 2.55080 2.57717 2.91354 3.41419 3.46580 3.68623 3.79675 3.86817 3.89715 3.92420 4.02308 4.09250 4.13911 4.33425 4.36611 4.47940 4.51174 4.56779 4.60860 4.66108 4.71771 4.79323 4.87006 4.89372 4.92049 5.03844 5.04798 5.11196 5.13071 5.31930 5.33069 5.38057 5.48003 5.50084 5.52978 5.54750 5.62789 5.83465 5.97091 6.30634 6.44250 6.68144 7.28406 7.33484 7.37300 8.13699 8.36599 9.34775 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010153 B = 0.004140 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.060742 B = 6761.575165 C = 8573.441887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.077 4.077 3 C -0.122 4.122 4 C 0.126 3.874 5 N -0.605 5.605 6 C 0.548 3.452 7 O -0.593 6.593 8 C -0.096 4.096 9 C -0.030 4.030 10 C -0.128 4.128 11 C -0.088 4.088 12 C -0.127 4.127 13 C -0.088 4.088 14 C -0.149 4.149 15 C 0.540 3.460 16 N -0.836 5.836 17 O -0.569 6.569 18 C 0.078 3.922 19 C 0.167 3.833 20 H 0.086 0.914 21 N -0.718 5.718 22 C -0.234 4.234 23 H 0.083 0.917 24 C -0.075 4.075 25 N -0.969 5.969 26 Si 0.969 3.031 27 H -0.295 1.295 28 H -0.300 1.300 29 H -0.262 1.262 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.028 0.972 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.023 0.977 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.145 0.855 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.153 0.847 44 H 0.415 0.585 45 H 0.406 0.594 46 H 0.096 0.904 47 H 0.054 0.946 48 H 0.370 0.630 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.917 2.136 11.366 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.078 4.078 3 C -0.179 4.179 4 C 0.003 3.997 5 N -0.337 5.337 6 C 0.339 3.661 7 O -0.475 6.475 8 C -0.135 4.135 9 C -0.032 4.032 10 C -0.146 4.146 11 C -0.106 4.106 12 C -0.144 4.144 13 C -0.106 4.106 14 C -0.152 4.152 15 C 0.327 3.673 16 N -0.401 5.401 17 O -0.449 6.449 18 C -0.048 4.048 19 C 0.057 3.943 20 H 0.104 0.896 21 N -0.356 5.356 22 C -0.366 4.366 23 H 0.101 0.899 24 C -0.267 4.267 25 N -0.619 5.619 26 Si 0.799 3.201 27 H -0.223 1.223 28 H -0.227 1.227 29 H -0.187 1.187 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.042 0.958 37 H 0.090 0.910 38 H 0.135 0.865 39 H 0.116 0.884 40 H 0.163 0.837 41 H 0.180 0.820 42 H 0.183 0.817 43 H 0.170 0.830 44 H 0.247 0.753 45 H 0.236 0.764 46 H 0.114 0.886 47 H 0.072 0.928 48 H 0.202 0.798 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.582 2.556 11.354 21.085 hybrid contribution -1.186 -1.665 -0.678 2.154 sum 16.396 0.891 10.676 19.585 Atomic orbital electron populations 1.21549 0.93651 1.00797 1.01757 1.21892 0.96116 0.96550 0.93289 1.21704 1.01236 0.91895 1.03088 1.21923 0.87068 0.93511 0.97207 1.48296 1.29215 1.44122 1.12039 1.20207 0.83665 0.77037 0.85201 1.90574 1.73060 1.65279 1.18576 1.20698 0.95197 0.98969 0.98641 1.19594 0.94992 0.92778 0.95824 1.21292 0.94835 1.01157 0.97314 1.21752 0.99954 0.93799 0.95068 1.21537 0.95478 0.97043 1.00377 1.21579 0.95748 0.99503 0.93780 1.19816 0.96368 0.97318 1.01722 1.18926 0.85190 0.82297 0.80896 1.43582 1.31270 1.15058 1.50179 1.90929 1.60013 1.55788 1.38132 1.23341 1.00857 1.00521 0.80033 1.21699 0.88507 0.88512 0.95624 0.89585 1.42504 1.50163 1.33946 1.08966 1.19658 1.19374 1.09129 0.88428 0.89947 1.25516 1.00327 0.99884 1.00974 1.69872 1.32262 1.26172 1.33619 0.85202 0.75957 0.78418 0.80557 1.22306 1.22691 1.18681 0.91497 0.91969 0.95323 0.91565 0.90964 0.91154 0.95845 0.90962 0.86519 0.88377 0.83701 0.81984 0.81703 0.82979 0.75274 0.76352 0.88577 0.92777 0.79771 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.20 8.16 71.98 0.59 -3.61 16 2 C -0.08 -2.53 0.80 -50.99 -0.04 -2.58 16 3 C -0.12 -2.85 8.44 71.98 0.61 -2.24 16 4 C 0.13 4.76 6.03 86.73 0.52 5.28 16 5 N -0.61 -23.84 3.32 -811.35 -2.70 -26.53 16 6 C 0.55 22.69 6.28 87.66 0.55 23.25 16 7 O -0.59 -28.00 16.27 -3.04 -0.05 -28.05 16 8 C -0.10 -3.31 4.13 29.10 0.12 -3.19 16 9 C -0.03 -0.93 4.46 -19.61 -0.09 -1.02 16 10 C -0.13 -2.87 9.66 22.23 0.21 -2.65 16 11 C -0.09 -1.44 10.04 22.33 0.22 -1.21 16 12 C -0.13 -1.97 10.03 22.23 0.22 -1.75 16 13 C -0.09 -1.78 9.53 22.53 0.21 -1.56 16 14 C -0.15 -4.49 5.74 -20.09 -0.12 -4.61 16 15 C 0.54 19.51 7.97 86.79 0.69 20.20 16 16 N -0.84 -21.78 8.82 -175.61 -1.55 -23.33 16 17 O -0.57 -27.30 13.07 -3.86 -0.05 -27.35 16 18 C 0.08 2.81 6.08 86.93 0.53 3.34 16 19 C 0.17 6.50 2.96 46.46 0.14 6.64 16 20 H 0.09 3.10 7.99 -2.38 -0.02 3.09 16 21 N -0.72 -37.01 4.57 -316.02 -1.44 -38.45 16 22 C -0.23 -13.10 9.96 84.03 0.84 -12.26 16 23 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 24 C -0.07 -4.44 5.50 84.86 0.47 -3.97 16 25 N -0.97 -62.39 13.06 21.65 0.28 -62.11 16 26 Si 0.97 47.60 29.55 68.60 2.03 49.63 16 27 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 28 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 29 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.03 1.24 6.34 -2.38 -0.02 1.23 16 33 H 0.07 1.41 7.42 -2.39 -0.02 1.40 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.02 1.05 7.82 -2.39 -0.02 1.03 16 37 H 0.07 2.45 7.85 -2.39 -0.02 2.44 16 38 H 0.12 3.11 8.00 -2.38 -0.02 3.09 16 39 H 0.10 3.98 5.86 -2.39 -0.01 3.97 16 40 H 0.15 2.57 8.03 -2.91 -0.02 2.54 16 41 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 42 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.15 2.01 6.45 -2.91 -0.02 1.99 16 44 H 0.41 6.84 6.90 -92.71 -0.64 6.20 16 45 H 0.41 10.85 8.93 -92.70 -0.83 10.02 16 46 H 0.10 2.63 7.69 -2.39 -0.02 2.61 16 47 H 0.05 2.23 7.48 -2.38 -0.02 2.21 16 48 H 0.37 21.66 6.32 -92.71 -0.59 21.08 16 49 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -87.02 393.66 1.15 -85.87 By element: Atomic # 1 Polarization: 53.32 SS G_CDS: -1.05 Total: 52.27 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 5.68 Total: 18.05 kcal Atomic # 7 Polarization: -145.01 SS G_CDS: -5.41 Total: -150.42 kcal Atomic # 8 Polarization: -55.30 SS G_CDS: -0.10 Total: -55.40 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -87.02 1.15 -85.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996108437.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.323 kcal (2) G-P(sol) polarization free energy of solvation -87.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds