Wall clock time and date at job start Wed Apr 1 2020 03:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30014 * 127.33480 * 2 1 4 4 O 1.20660 * 112.30424 * 179.97438 * 3 2 1 5 5 C 1.33494 * 113.15251 * 359.76030 * 4 3 2 6 6 C 1.50705 * 126.82813 * 180.29938 * 5 4 3 7 7 C 1.52996 * 117.49789 * 8.85446 * 6 5 4 8 8 C 1.52995 * 117.49902 * 300.19300 * 6 5 4 9 9 C 1.37359 * 106.34218 * 0.38649 * 5 4 3 10 10 C 1.47398 * 128.56361 * 179.91202 * 9 5 4 11 11 O 1.21614 * 119.99910 * 269.69764 * 10 9 5 12 12 N 1.34778 * 120.00244 * 89.70066 * 10 9 5 13 13 C 1.49626 * 126.06986 * 359.96177 * 12 10 9 14 14 C 1.51523 * 102.49575 * 154.38660 * 13 12 10 15 15 H 1.08996 * 111.54878 * 287.98339 * 14 13 12 16 16 C 1.51557 * 123.33756 * 151.62692 * 14 13 12 17 17 C 1.56337 * 101.81351 * 207.98035 * 16 14 13 18 18 C 1.56008 * 105.76872 * 25.44334 * 17 16 14 19 19 H 1.09004 * 110.64470 * 248.27814 * 18 17 16 20 20 N 1.46494 * 110.52557 * 125.58393 * 18 17 16 21 21 C 1.36937 * 119.99886 * 90.43594 * 20 18 17 22 22 H 1.07991 * 120.00279 * 0.02562 * 21 20 18 23 23 C 1.38818 * 119.99696 * 179.97438 * 21 20 18 24 24 N 1.31612 * 120.00424 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99779 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47362 * 90.00205 * 25 23 21 27 27 H 1.48496 * 109.47118 * 210.00062 * 25 23 21 28 28 H 1.48506 * 109.47070 * 330.00209 * 25 23 21 29 29 C 1.49707 * 103.98258 * 6.95874 * 18 17 16 30 30 H 1.08992 * 108.54952 * 76.80081 * 29 18 17 31 31 C 1.49283 * 126.07303 * 179.97438 * 12 10 9 32 32 H 1.08998 * 109.47262 * 269.99740 * 1 2 3 33 33 H 1.09014 * 109.47174 * 29.99583 * 1 2 3 34 34 H 1.08995 * 109.47229 * 149.99191 * 1 2 3 35 35 H 1.09002 * 115.54926 * 154.52153 * 6 5 4 36 36 H 1.08999 * 117.50097 * 359.97438 * 7 6 5 37 37 H 1.08997 * 117.49700 * 145.02403 * 7 6 5 38 38 H 1.09000 * 117.49725 * 214.98254 * 8 6 5 39 39 H 1.08999 * 117.49719 * 359.97221 * 8 6 5 40 40 H 1.08999 * 110.80315 * 36.13007 * 13 12 10 41 41 H 1.09006 * 110.96247 * 272.71520 * 13 12 10 42 42 H 1.09008 * 110.95958 * 89.85621 * 16 14 13 43 43 H 1.09001 * 110.96513 * 326.11536 * 16 14 13 44 44 H 1.08997 * 110.19691 * 266.36751 * 17 16 14 45 45 H 1.08999 * 110.19013 * 144.51704 * 17 16 14 46 46 H 0.97001 * 120.00136 * 270.42833 * 20 18 17 47 47 H 0.97000 * 120.00780 * 179.97438 * 24 23 21 48 48 H 1.08999 * 110.39391 * 54.78239 * 31 12 10 49 49 H 1.08991 * 110.40163 * 292.37859 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6494 -0.6007 0.0061 6 6 4.9712 -1.3245 0.0145 7 6 6.2339 -0.4869 0.2260 8 6 5.9238 -1.0694 -1.1552 9 6 2.3991 -1.1696 0.0005 10 6 2.0401 -2.5991 0.0014 11 8 1.8922 -3.1896 -1.0514 12 7 1.8756 -3.2520 1.1690 13 6 2.0239 -2.6627 2.5363 14 6 1.1386 -3.5595 3.3776 15 1 0.0822 -3.3821 3.1761 16 6 1.3773 -3.8199 4.8515 17 6 0.7552 -5.2430 5.0300 18 6 0.8259 -5.9159 3.6243 19 1 -0.1738 -6.0448 3.2092 20 7 1.5168 -7.2051 3.7061 21 6 0.8041 -8.3501 3.9426 22 1 -0.2674 -8.3029 4.0685 23 6 1.4588 -9.5718 4.0196 24 7 2.7647 -9.6294 3.8657 25 14 0.4864 -11.1339 4.3416 26 1 0.0585 -11.7260 3.0487 27 1 1.3386 -12.1055 5.0730 28 1 -0.7109 -10.8120 5.1590 29 6 1.6159 -4.9482 2.7993 30 1 2.6692 -5.0484 3.0612 31 6 1.5134 -4.6915 1.3278 32 1 -0.3634 0.0000 1.0276 33 1 -0.3634 0.8901 -0.5138 34 1 -0.3633 -0.8899 -0.5139 35 1 4.9552 -2.3275 0.4411 36 1 6.1087 0.5877 0.3586 37 1 7.0488 -0.9390 0.7913 38 1 6.5348 -1.9044 -1.4979 39 1 5.5943 -0.3784 -1.9310 40 1 1.6633 -1.6342 2.5558 41 1 3.0593 -2.7146 2.8732 42 1 0.8558 -3.0864 5.4665 43 1 2.4435 -3.8291 5.0781 44 1 -0.2815 -5.1622 5.3567 45 1 1.3341 -5.8187 5.7521 46 1 2.4793 -7.2476 3.5926 47 1 3.2223 -10.4830 3.9199 48 1 2.2156 -5.3222 0.7825 49 1 0.4952 -4.8675 0.9813 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026315321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:42 Heat of formation + Delta-G solvation = 82.535886 kcal Electronic energy + Delta-G solvation = -30791.772759 eV Core-core repulsion = 26723.816482 eV Total energy + Delta-G solvation = -4067.956277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.11500 -40.57610 -38.67706 -37.73125 -35.37546 -34.79011 -33.43258 -32.04012 -30.96539 -29.67838 -29.00430 -28.51135 -25.73923 -24.91009 -23.88741 -23.19073 -22.84743 -22.59764 -20.33526 -20.18658 -19.38366 -19.19059 -18.01338 -17.66679 -17.11906 -16.62506 -16.53110 -16.21974 -15.20156 -14.99239 -14.75154 -14.32263 -14.00473 -13.80763 -13.78983 -13.65401 -13.55759 -13.18612 -12.92690 -12.71632 -12.45849 -12.35769 -12.00657 -11.97363 -11.74417 -11.58991 -11.51082 -11.45387 -11.10516 -10.87140 -10.84928 -10.80498 -10.54150 -10.25478 -10.19757 -10.16473 -10.04796 -9.82823 -9.62696 -9.41467 -8.95011 -8.74340 -7.01687 -5.81058 -3.10321 1.00069 1.65845 2.30738 2.46841 2.89873 3.36736 3.41312 3.46812 3.48080 3.78803 3.87054 4.07067 4.30622 4.38284 4.47396 4.53952 4.55559 4.82647 4.96733 4.98750 5.11384 5.17613 5.20544 5.23703 5.27408 5.29267 5.33547 5.36844 5.48454 5.52060 5.53799 5.59470 5.68045 5.68111 5.74729 5.82482 5.86403 5.92305 5.97862 6.07473 6.13092 6.29084 6.31430 6.44088 6.57736 6.73874 7.00218 7.36313 7.67148 7.96378 7.99687 8.37049 9.48669 10.04556 10.39015 11.41334 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015408 B = 0.002612 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.811093 B =10716.203380 C =11284.680826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.056 3.944 3 N -0.355 5.355 4 O 0.096 5.904 5 C 0.050 3.950 6 C -0.095 4.095 7 C -0.161 4.161 8 C -0.155 4.155 9 C -0.234 4.234 10 C 0.613 3.387 11 O -0.526 6.526 12 N -0.613 5.613 13 C 0.120 3.880 14 C -0.127 4.127 15 H 0.087 0.913 16 C -0.100 4.100 17 C -0.143 4.143 18 C 0.200 3.800 19 H 0.057 0.943 20 N -0.720 5.720 21 C -0.241 4.241 22 H 0.071 0.929 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C -0.120 4.120 30 H 0.075 0.925 31 C 0.135 3.865 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.139 0.861 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.079 0.921 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.538 22.185 -4.496 22.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 N -0.062 5.062 4 O 0.034 5.966 5 C -0.014 4.014 6 C -0.114 4.114 7 C -0.198 4.198 8 C -0.193 4.193 9 C -0.241 4.241 10 C 0.398 3.602 11 O -0.402 6.402 12 N -0.347 5.347 13 C -0.002 4.002 14 C -0.147 4.147 15 H 0.106 0.894 16 C -0.138 4.138 17 C -0.184 4.184 18 C 0.088 3.912 19 H 0.075 0.925 20 N -0.360 5.360 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 C -0.140 4.140 30 H 0.094 0.906 31 C 0.015 3.985 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.157 0.843 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.097 0.903 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.168 23.052 -5.128 23.715 hybrid contribution -0.278 -1.698 0.220 1.735 sum 1.890 21.354 -4.908 21.992 Atomic orbital electron populations 1.20238 0.85070 1.04364 1.03880 1.24721 0.98575 0.86420 1.00945 1.73619 0.89020 1.23195 1.20391 1.84492 1.21537 1.22335 1.68216 1.23494 0.95502 0.83395 0.98976 1.20520 0.83977 0.99519 1.07362 1.23120 0.96820 1.00213 0.99603 1.23136 1.00496 1.03915 0.91705 1.21769 0.92463 0.95211 1.14665 1.16433 0.77272 0.83674 0.82774 1.90846 1.50951 1.67831 1.30588 1.49798 1.68147 1.11628 1.05126 1.21748 1.00072 0.96974 0.81382 1.22577 0.99861 0.95870 0.96397 0.89435 1.21863 1.01078 0.97845 0.93028 1.23801 0.99990 0.93858 1.00781 1.19936 0.95006 0.85195 0.91033 0.92535 1.42490 1.07063 1.00809 1.85620 1.19241 0.91562 0.85342 1.41092 0.91122 1.24738 0.95648 0.97702 1.02677 1.69648 1.06794 1.24830 1.56737 0.86216 0.78812 0.83554 0.77753 1.21689 1.21804 1.20750 1.22123 1.02527 0.96096 0.93216 0.90631 1.21035 1.01464 0.79377 0.96653 0.89545 0.89876 0.89650 0.84313 0.87618 0.87212 0.87111 0.88010 0.90989 0.90790 0.92158 0.91524 0.92608 0.90695 0.78167 0.93473 0.90308 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.49 36.00 0.38 -0.33 16 2 C 0.06 0.66 7.59 -79.77 -0.61 0.05 16 3 N -0.36 -4.39 12.01 34.78 0.42 -3.97 16 4 O 0.10 1.10 10.86 18.65 0.20 1.30 16 5 C 0.05 0.56 7.00 -34.63 -0.24 0.31 16 6 C -0.09 -0.85 6.14 -91.77 -0.56 -1.42 16 7 C -0.16 -1.05 10.19 -26.70 -0.27 -1.32 16 8 C -0.16 -1.14 10.24 -26.70 -0.27 -1.42 16 9 C -0.23 -2.99 5.22 -102.90 -0.54 -3.53 16 10 C 0.61 9.05 7.69 -12.53 -0.10 8.96 16 11 O -0.53 -9.71 17.47 5.27 0.09 -9.62 16 12 N -0.61 -8.22 3.43 -172.84 -0.59 -8.82 16 13 C 0.12 1.33 6.46 -3.05 -0.02 1.31 16 14 C -0.13 -1.51 3.14 -89.45 -0.28 -1.79 16 15 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 16 C -0.10 -1.20 6.59 -25.67 -0.17 -1.37 16 17 C -0.14 -2.24 6.74 -23.33 -0.16 -2.40 16 18 C 0.20 3.60 3.45 -67.95 -0.23 3.36 16 19 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 20 N -0.72 -16.90 5.10 -53.45 -0.27 -17.18 16 21 C -0.24 -6.41 9.96 -15.06 -0.15 -6.56 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 25 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C -0.12 -1.79 2.22 -91.23 -0.20 -1.99 16 30 H 0.08 1.20 7.72 -51.93 -0.40 0.80 16 31 C 0.14 2.03 6.83 -4.12 -0.03 2.00 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.14 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.11 0.66 8.02 -51.93 -0.42 0.24 16 37 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.72 7.75 -51.93 -0.40 0.32 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.07 1.35 7.98 -51.93 -0.41 0.93 16 46 H 0.38 9.67 7.68 -40.82 -0.31 9.36 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 49 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 405.62 15.07 6.11 6.11 Total: -1.00 -31.76 405.62 -9.72 -41.48 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.83 Total: 7.00 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -3.55 Total: -6.55 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.28 Total: -56.62 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.29 Total: -8.31 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.76 -9.72 -41.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026315321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.018 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds