Wall clock time and date at job start Wed Apr 1 2020 03:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30018 * 127.33699 * 2 1 4 4 O 1.20651 * 112.30455 * 180.02562 * 3 2 1 5 5 C 1.33502 * 113.15590 * 359.75301 * 4 3 2 6 6 C 1.50696 * 126.83021 * 180.30599 * 5 4 3 7 7 C 1.53003 * 117.49900 * 8.85032 * 6 5 4 8 8 C 1.53006 * 117.49845 * 300.19349 * 6 5 4 9 9 C 1.37356 * 106.33602 * 0.39091 * 5 4 3 10 10 C 1.47398 * 128.56225 * 179.90672 * 9 5 4 11 11 O 1.21609 * 120.00659 * 269.70693 * 10 9 5 12 12 N 1.34783 * 120.00003 * 89.70180 * 10 9 5 13 13 C 1.46596 * 119.68062 * 0.02562 * 12 10 9 14 14 C 1.53955 * 110.57588 * 132.19658 * 13 12 10 15 15 C 1.51517 * 107.34588 * 51.05135 * 14 13 12 16 16 H 1.08998 * 108.80540 * 53.44306 * 15 14 13 17 17 C 1.55097 * 107.77027 * 295.30058 * 15 14 13 18 18 H 1.09007 * 111.32994 * 308.99441 * 17 15 14 19 19 C 1.53740 * 100.31971 * 191.11603 * 17 15 14 20 20 C 1.55293 * 101.84305 * 38.94842 * 19 17 15 21 21 N 1.45463 * 117.34668 * 178.09146 * 15 14 13 22 22 C 1.36938 * 126.40840 * 329.41821 * 21 15 14 23 23 H 1.07994 * 119.99751 * 18.69178 * 22 21 15 24 24 C 1.38815 * 119.99761 * 198.69273 * 22 21 15 25 25 N 1.31627 * 119.99755 * 185.94153 * 24 22 21 26 26 Si 1.86795 * 120.00180 * 5.94551 * 24 22 21 27 27 H 1.48504 * 109.47005 * 179.97438 * 26 24 22 28 28 H 1.48504 * 109.47336 * 60.00086 * 26 24 22 29 29 H 1.48494 * 109.47297 * 299.99716 * 26 24 22 30 30 C 1.47790 * 119.83452 * 180.35354 * 12 10 9 31 31 H 1.09002 * 109.47181 * 270.00413 * 1 2 3 32 32 H 1.09006 * 109.47203 * 29.99594 * 1 2 3 33 33 H 1.08992 * 109.47530 * 150.00008 * 1 2 3 34 34 H 1.08996 * 115.55147 * 154.52559 * 6 5 4 35 35 H 1.08993 * 117.49870 * 0.02562 * 7 6 5 36 36 H 1.09002 * 117.49272 * 145.02216 * 7 6 5 37 37 H 1.08997 * 117.49554 * 214.98656 * 8 6 5 38 38 H 1.09000 * 117.49767 * 359.97438 * 8 6 5 39 39 H 1.09004 * 109.25707 * 11.91594 * 13 12 10 40 40 H 1.08999 * 109.25987 * 252.47899 * 13 12 10 41 41 H 1.09004 * 109.87908 * 291.58888 * 14 13 12 42 42 H 1.08998 * 109.88238 * 170.51298 * 14 13 12 43 43 H 1.08996 * 110.95840 * 280.80741 * 19 17 15 44 44 H 1.09002 * 110.95736 * 157.08340 * 19 17 15 45 45 H 1.09000 * 109.91618 * 218.16984 * 20 19 17 46 46 H 1.08994 * 110.09048 * 96.96242 * 20 19 17 47 47 H 0.96996 * 119.99692 * 5.10026 * 25 24 22 48 48 H 1.08996 * 110.64689 * 112.73945 * 30 12 10 49 49 H 1.09004 * 109.73519 * 351.00722 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6008 0.0044 6 6 4.9712 -1.3246 0.0117 7 6 6.2341 -0.4871 0.2227 8 6 5.9231 -1.0689 -1.1586 9 6 2.3991 -1.1695 -0.0006 10 6 2.0400 -2.5991 -0.0002 11 8 1.8915 -3.1892 -1.0531 12 7 1.8763 -3.2525 1.1673 13 6 2.0566 -2.5344 2.4325 14 6 0.8843 -2.8201 3.3887 15 6 0.7188 -4.3243 3.4637 16 1 1.6772 -4.7703 3.7297 17 6 0.2995 -4.8252 2.0570 18 1 -0.5492 -4.2601 1.6717 19 6 -0.0971 -6.2734 2.3873 20 6 -0.8071 -6.1046 3.7581 21 7 -0.3129 -4.8397 4.3502 22 6 -0.7500 -4.2608 5.5117 23 1 -0.5579 -3.2148 5.6993 24 6 -1.4399 -5.0186 6.4480 25 7 -1.9614 -4.4391 7.5085 26 14 -1.6280 -6.8609 6.2031 27 1 -2.3994 -7.4345 7.3350 28 1 -0.2852 -7.4928 6.1493 29 1 -2.3484 -7.1201 4.9308 30 6 1.5239 -4.6878 1.1634 31 1 -0.3634 0.0001 1.0277 32 1 -0.3634 0.8901 -0.5138 33 1 -0.3634 -0.8899 -0.5138 34 1 4.9555 -2.3277 0.4377 35 1 6.1089 0.5873 0.3566 36 1 7.0494 -0.9395 0.7873 37 1 6.5338 -1.9038 -1.5021 38 1 5.5931 -0.3775 -1.9339 39 1 2.1061 -1.4637 2.2343 40 1 2.9876 -2.8563 2.8991 41 1 -0.0281 -2.3655 3.0025 42 1 1.1076 -2.4218 4.3784 43 1 0.7845 -6.9075 2.4804 44 1 -0.7835 -6.6699 1.6391 45 1 -0.5589 -6.9419 4.4103 46 1 -1.8866 -6.0517 3.6166 47 1 -1.9284 -3.4739 7.5992 48 1 2.3445 -5.2861 1.5592 49 1 1.2837 -5.0051 0.1487 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036775310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:14 Heat of formation + Delta-G solvation = 93.133978 kcal Electronic energy + Delta-G solvation = -31618.518242 eV Core-core repulsion = 27551.021533 eV Total energy + Delta-G solvation = -4067.496709 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.10576 -40.40021 -38.57240 -37.76831 -35.68593 -34.78399 -32.94737 -32.00550 -31.74947 -30.34836 -28.99238 -28.43272 -25.83403 -24.38144 -23.86143 -23.07356 -22.81799 -22.69549 -20.66222 -20.38281 -19.69347 -19.25587 -18.09657 -17.69141 -17.17895 -16.68644 -16.31800 -16.05065 -15.32383 -15.14034 -14.87605 -14.55318 -14.14898 -13.89980 -13.59728 -13.56349 -13.37738 -13.15901 -13.08674 -12.90106 -12.76549 -12.39918 -12.26732 -12.02899 -11.98873 -11.73508 -11.48888 -11.47299 -11.19857 -10.95290 -10.88533 -10.87069 -10.63770 -10.29085 -10.07646 -10.01758 -9.83947 -9.37589 -9.21217 -9.08533 -8.77226 -8.73418 -7.04085 -6.34076 -3.31594 1.00911 1.70182 2.24702 2.50360 2.94527 3.33697 3.39366 3.45747 3.68055 3.81064 3.88922 4.27734 4.35349 4.43902 4.49681 4.58482 4.68760 4.87085 4.95780 5.01509 5.09388 5.10502 5.19412 5.22941 5.28677 5.29761 5.34244 5.39768 5.43505 5.47877 5.50976 5.55813 5.58481 5.63985 5.73389 5.80564 5.83272 5.91848 5.99596 6.05189 6.13810 6.21933 6.38739 6.41456 6.60175 6.72516 6.84626 7.21939 7.68558 7.95686 8.00154 8.29186 8.98553 9.53290 10.21539 11.16473 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.003031 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.787315 B = 9234.736248 C = 9557.971476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.058 3.942 3 N -0.354 5.354 4 O 0.096 5.904 5 C 0.045 3.955 6 C -0.093 4.093 7 C -0.161 4.161 8 C -0.156 4.156 9 C -0.235 4.235 10 C 0.599 3.401 11 O -0.531 6.531 12 N -0.595 5.595 13 C 0.113 3.887 14 C -0.126 4.126 15 C 0.169 3.831 16 H 0.025 0.975 17 C -0.126 4.126 18 H 0.084 0.916 19 C -0.119 4.119 20 C 0.107 3.893 21 N -0.604 5.604 22 C -0.319 4.319 23 H 0.077 0.923 24 C -0.020 4.020 25 N -0.931 5.931 26 Si 1.074 2.926 27 H -0.303 1.303 28 H -0.297 1.297 29 H -0.284 1.284 30 C 0.128 3.872 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.032 0.968 46 H 0.049 0.951 47 H 0.261 0.739 48 H 0.075 0.925 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.052 5.713 -16.881 22.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 N -0.061 5.061 4 O 0.035 5.965 5 C -0.019 4.019 6 C -0.112 4.112 7 C -0.198 4.198 8 C -0.193 4.193 9 C -0.242 4.242 10 C 0.384 3.616 11 O -0.408 6.408 12 N -0.327 5.327 13 C -0.010 4.010 14 C -0.165 4.165 15 C 0.060 3.940 16 H 0.043 0.957 17 C -0.147 4.147 18 H 0.102 0.898 19 C -0.158 4.158 20 C -0.017 4.017 21 N -0.330 5.330 22 C -0.446 4.446 23 H 0.094 0.906 24 C -0.219 4.219 25 N -0.573 5.573 26 Si 0.908 3.092 27 H -0.231 1.231 28 H -0.226 1.226 29 H -0.212 1.212 30 C 0.006 3.994 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.156 0.844 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.093 0.907 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.150 5.385 -16.601 21.852 hybrid contribution 0.414 0.719 -0.532 0.985 sum 13.564 6.104 -17.133 22.688 Atomic orbital electron populations 1.20261 0.84972 1.04291 1.04203 1.24749 0.98641 0.86321 1.00715 1.73627 0.88974 1.23152 1.20314 1.84497 1.21590 1.22259 1.68167 1.23470 0.95411 0.83540 0.99443 1.20482 0.84051 0.99439 1.07218 1.23122 0.96792 1.00362 0.99495 1.23130 1.00537 1.03883 0.91751 1.21768 0.92522 0.95435 1.14480 1.16946 0.76898 0.83896 0.83809 1.90799 1.51064 1.67866 1.31042 1.48252 1.67946 1.10922 1.05588 1.21793 0.99257 0.96284 0.83679 1.21836 0.97269 0.98516 0.98893 1.20558 0.92480 0.92305 0.88611 0.95743 1.22640 0.97227 0.97776 0.97034 0.89767 1.22413 1.00422 0.95448 0.97476 1.22450 0.97524 0.89727 0.91997 1.44496 1.40925 1.23602 1.23947 1.20111 1.35690 0.95179 0.93615 0.90578 1.25961 0.97172 1.06208 0.92598 1.70901 1.46471 1.11698 1.28182 0.83805 0.75577 0.75749 0.74099 1.23088 1.22553 1.21162 1.21655 0.96803 0.79219 1.01690 0.89277 0.89848 0.89686 0.84446 0.87557 0.87270 0.87233 0.88002 0.90573 0.91337 0.91472 0.90188 0.91278 0.91118 0.95054 0.93293 0.92908 0.90670 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.49 36.00 0.38 -0.47 16 2 C 0.06 0.74 7.45 -79.77 -0.59 0.15 16 3 N -0.35 -4.66 12.01 34.78 0.42 -4.25 16 4 O 0.10 1.16 10.86 18.63 0.20 1.36 16 5 C 0.04 0.50 7.00 -34.63 -0.24 0.26 16 6 C -0.09 -0.78 6.15 -91.77 -0.56 -1.35 16 7 C -0.16 -0.99 10.19 -26.69 -0.27 -1.26 16 8 C -0.16 -1.04 10.24 -26.69 -0.27 -1.31 16 9 C -0.23 -3.05 4.15 -102.90 -0.43 -3.47 16 10 C 0.60 8.54 7.49 -12.53 -0.09 8.45 16 11 O -0.53 -9.05 16.47 5.27 0.09 -8.96 16 12 N -0.59 -7.94 2.99 -173.73 -0.52 -8.46 16 13 C 0.11 1.46 6.21 -3.49 -0.02 1.44 16 14 C -0.13 -2.05 5.40 -26.98 -0.15 -2.19 16 15 C 0.17 3.10 2.57 -68.13 -0.18 2.92 16 16 H 0.03 0.47 7.91 -51.93 -0.41 0.06 16 17 C -0.13 -1.97 2.83 -89.53 -0.25 -2.22 16 18 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 19 C -0.12 -1.86 6.54 -25.13 -0.16 -2.03 16 20 C 0.11 2.23 4.66 -1.91 -0.01 2.22 16 21 N -0.60 -13.98 3.23 -163.27 -0.53 -14.51 16 22 C -0.32 -8.73 10.22 -15.06 -0.15 -8.88 16 23 H 0.08 2.19 7.46 -52.49 -0.39 1.79 16 24 C -0.02 -0.58 5.50 -17.43 -0.10 -0.67 16 25 N -0.93 -28.82 13.70 55.49 0.76 -28.06 16 26 Si 1.07 26.37 24.60 -169.99 -4.18 22.19 16 27 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 28 H -0.30 -7.04 6.85 56.52 0.39 -6.65 16 29 H -0.28 -6.35 5.31 56.52 0.30 -6.05 16 30 C 0.13 1.70 5.98 -3.74 -0.02 1.68 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.14 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.11 0.66 8.02 -51.93 -0.42 0.24 16 36 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.94 6.16 -51.93 -0.32 0.62 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 42 H 0.08 1.40 7.75 -51.93 -0.40 0.99 16 43 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.03 0.69 4.03 -51.93 -0.21 0.48 16 46 H 0.05 1.07 6.74 -51.93 -0.35 0.72 16 47 H 0.26 7.98 8.73 -40.82 -0.36 7.62 16 48 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 49 H 0.09 1.26 6.98 -51.93 -0.36 0.90 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -33.29 385.68 -8.70 -41.99 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.62 Total: -0.35 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -3.13 Total: -6.76 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.13 Total: -55.28 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.29 Total: -7.60 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -4.18 Total: 22.19 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.29 -8.70 -41.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036775310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.120 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds