Wall clock time and date at job start Wed Apr 1 2020 03:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30018 * 127.33699 * 2 1 4 4 O 1.20651 * 112.30455 * 180.02562 * 3 2 1 5 5 C 1.33502 * 113.15590 * 359.75301 * 4 3 2 6 6 C 1.50696 * 126.83021 * 180.30599 * 5 4 3 7 7 C 1.53003 * 117.49900 * 8.85032 * 6 5 4 8 8 C 1.53006 * 117.49845 * 300.19349 * 6 5 4 9 9 C 1.37356 * 106.33602 * 0.39091 * 5 4 3 10 10 C 1.47398 * 128.56225 * 179.90672 * 9 5 4 11 11 O 1.21609 * 120.00659 * 269.70693 * 10 9 5 12 12 N 1.34783 * 120.00003 * 89.70180 * 10 9 5 13 13 C 1.46596 * 119.68062 * 0.02562 * 12 10 9 14 14 C 1.53955 * 110.57588 * 132.19658 * 13 12 10 15 15 C 1.51517 * 107.34588 * 51.05135 * 14 13 12 16 16 H 1.08998 * 108.80540 * 53.44306 * 15 14 13 17 17 C 1.55097 * 107.77027 * 295.30058 * 15 14 13 18 18 H 1.09007 * 111.32994 * 308.99441 * 17 15 14 19 19 C 1.53740 * 100.31971 * 191.11603 * 17 15 14 20 20 C 1.55293 * 101.84305 * 38.94842 * 19 17 15 21 21 N 1.45463 * 117.34668 * 178.09146 * 15 14 13 22 22 C 1.36938 * 126.40840 * 329.41821 * 21 15 14 23 23 H 1.07994 * 119.99751 * 18.69178 * 22 21 15 24 24 C 1.38815 * 119.99761 * 198.69273 * 22 21 15 25 25 N 1.31627 * 119.99755 * 185.94153 * 24 22 21 26 26 Si 1.86795 * 120.00180 * 5.94551 * 24 22 21 27 27 H 1.48504 * 109.47005 * 179.97438 * 26 24 22 28 28 H 1.48504 * 109.47336 * 60.00086 * 26 24 22 29 29 H 1.48494 * 109.47297 * 299.99716 * 26 24 22 30 30 C 1.47790 * 119.83452 * 180.35354 * 12 10 9 31 31 H 1.09002 * 109.47181 * 270.00413 * 1 2 3 32 32 H 1.09006 * 109.47203 * 29.99594 * 1 2 3 33 33 H 1.08992 * 109.47530 * 150.00008 * 1 2 3 34 34 H 1.08996 * 115.55147 * 154.52559 * 6 5 4 35 35 H 1.08993 * 117.49870 * 0.02562 * 7 6 5 36 36 H 1.09002 * 117.49272 * 145.02216 * 7 6 5 37 37 H 1.08997 * 117.49554 * 214.98656 * 8 6 5 38 38 H 1.09000 * 117.49767 * 359.97438 * 8 6 5 39 39 H 1.09004 * 109.25707 * 11.91594 * 13 12 10 40 40 H 1.08999 * 109.25987 * 252.47899 * 13 12 10 41 41 H 1.09004 * 109.87908 * 291.58888 * 14 13 12 42 42 H 1.08998 * 109.88238 * 170.51298 * 14 13 12 43 43 H 1.08996 * 110.95840 * 280.80741 * 19 17 15 44 44 H 1.09002 * 110.95736 * 157.08340 * 19 17 15 45 45 H 1.09000 * 109.91618 * 218.16984 * 20 19 17 46 46 H 1.08994 * 110.09048 * 96.96242 * 20 19 17 47 47 H 0.96996 * 119.99692 * 5.10026 * 25 24 22 48 48 H 1.08996 * 110.64689 * 112.73945 * 30 12 10 49 49 H 1.09004 * 109.73519 * 351.00722 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6008 0.0044 6 6 4.9712 -1.3246 0.0117 7 6 6.2341 -0.4871 0.2227 8 6 5.9231 -1.0689 -1.1586 9 6 2.3991 -1.1695 -0.0006 10 6 2.0400 -2.5991 -0.0002 11 8 1.8915 -3.1892 -1.0531 12 7 1.8763 -3.2525 1.1673 13 6 2.0566 -2.5344 2.4325 14 6 0.8843 -2.8201 3.3887 15 6 0.7188 -4.3243 3.4637 16 1 1.6772 -4.7703 3.7297 17 6 0.2995 -4.8252 2.0570 18 1 -0.5492 -4.2601 1.6717 19 6 -0.0971 -6.2734 2.3873 20 6 -0.8071 -6.1046 3.7581 21 7 -0.3129 -4.8397 4.3502 22 6 -0.7500 -4.2608 5.5117 23 1 -0.5579 -3.2148 5.6993 24 6 -1.4399 -5.0186 6.4480 25 7 -1.9614 -4.4391 7.5085 26 14 -1.6280 -6.8609 6.2031 27 1 -2.3994 -7.4345 7.3350 28 1 -0.2852 -7.4928 6.1493 29 1 -2.3484 -7.1201 4.9308 30 6 1.5239 -4.6878 1.1634 31 1 -0.3634 0.0001 1.0277 32 1 -0.3634 0.8901 -0.5138 33 1 -0.3634 -0.8899 -0.5138 34 1 4.9555 -2.3277 0.4377 35 1 6.1089 0.5873 0.3566 36 1 7.0494 -0.9395 0.7873 37 1 6.5338 -1.9038 -1.5021 38 1 5.5931 -0.3775 -1.9339 39 1 2.1061 -1.4637 2.2343 40 1 2.9876 -2.8563 2.8991 41 1 -0.0281 -2.3655 3.0025 42 1 1.1076 -2.4218 4.3784 43 1 0.7845 -6.9075 2.4804 44 1 -0.7835 -6.6699 1.6391 45 1 -0.5589 -6.9419 4.4103 46 1 -1.8866 -6.0517 3.6166 47 1 -1.9284 -3.4739 7.5992 48 1 2.3445 -5.2861 1.5592 49 1 1.2837 -5.0051 0.1487 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036775310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:13 Heat of formation + Delta-G solvation = 72.841826 kcal Electronic energy + Delta-G solvation = -31619.398176 eV Core-core repulsion = 27551.021533 eV Total energy + Delta-G solvation = -4068.376643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -46.04962 -41.61671 -39.91331 -38.36057 -37.03897 -35.75299 -34.76598 -33.18507 -33.00292 -31.88976 -29.98416 -29.75779 -27.09868 -25.87512 -24.69725 -24.31658 -24.03478 -23.31309 -22.22391 -21.54600 -20.85603 -20.30623 -19.42767 -18.96190 -18.47445 -17.70497 -17.28341 -17.12461 -16.80498 -16.58081 -16.04853 -15.69613 -15.47382 -15.08020 -14.85097 -14.69534 -14.46726 -14.43331 -14.31090 -14.11227 -13.94390 -13.72439 -13.47213 -13.10636 -12.95881 -12.72627 -12.57724 -12.47709 -12.44459 -12.26885 -12.24551 -12.17703 -11.59970 -11.46593 -11.44851 -11.31030 -11.20065 -11.00378 -10.94741 -10.67663 -10.23229 -9.88908 -9.01624 -8.60649 -5.49183 0.13151 0.73342 1.16135 1.42405 1.50994 1.58139 1.72861 1.94697 2.57443 2.76439 2.91827 3.07435 3.11948 3.22660 3.40462 3.58923 3.64798 3.71901 3.81637 3.86252 3.94588 3.99268 4.04041 4.12177 4.27106 4.34426 4.37996 4.41919 4.44352 4.45578 4.55955 4.59670 4.65066 4.74397 4.75052 4.76273 4.82070 4.86174 4.90521 4.96577 4.97439 5.04350 5.09782 5.19567 5.28528 5.36116 5.47009 5.64745 6.11202 6.14153 6.83408 6.85849 7.08139 7.49473 8.16202 8.91997 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.003031 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.787315 B = 9234.736248 C = 9557.971476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.050 3.950 3 N -0.372 5.372 4 O 0.095 5.905 5 C 0.062 3.938 6 C -0.116 4.116 7 C -0.145 4.145 8 C -0.150 4.150 9 C -0.263 4.263 10 C 0.608 3.392 11 O -0.560 6.560 12 N -0.592 5.592 13 C 0.128 3.872 14 C -0.120 4.120 15 C 0.156 3.844 16 H 0.033 0.967 17 C -0.111 4.111 18 H 0.069 0.931 19 C -0.106 4.106 20 C 0.094 3.906 21 N -0.626 5.626 22 C -0.297 4.297 23 H 0.047 0.953 24 C -0.082 4.082 25 N -0.972 5.972 26 Si 1.110 2.890 27 H -0.318 1.318 28 H -0.281 1.281 29 H -0.250 1.250 30 C 0.134 3.866 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.144 0.856 35 H 0.105 0.895 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.029 0.971 46 H 0.035 0.965 47 H 0.246 0.754 48 H 0.099 0.901 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.438 4.334 -19.253 25.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 N -0.080 5.080 4 O 0.035 5.965 5 C -0.001 4.001 6 C -0.135 4.135 7 C -0.182 4.182 8 C -0.187 4.187 9 C -0.270 4.270 10 C 0.394 3.606 11 O -0.439 6.439 12 N -0.323 5.323 13 C 0.004 3.996 14 C -0.160 4.160 15 C 0.049 3.951 16 H 0.051 0.949 17 C -0.131 4.131 18 H 0.088 0.912 19 C -0.144 4.144 20 C -0.030 4.030 21 N -0.352 5.352 22 C -0.425 4.425 23 H 0.065 0.935 24 C -0.275 4.275 25 N -0.617 5.617 26 Si 0.938 3.062 27 H -0.248 1.248 28 H -0.209 1.209 29 H -0.175 1.175 30 C 0.012 3.988 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.162 0.838 35 H 0.123 0.877 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.047 0.953 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.117 0.883 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.575 4.022 -19.026 24.915 hybrid contribution -0.256 1.274 0.167 1.310 sum 15.320 5.296 -18.859 24.868 Atomic orbital electron populations 1.20312 0.84068 1.04810 1.04471 1.25058 0.99425 0.86322 1.00340 1.73615 0.89413 1.23587 1.21345 1.84476 1.21193 1.22724 1.68078 1.23980 0.96178 0.83065 0.96904 1.20704 0.83458 0.99897 1.09476 1.23238 0.95651 1.00129 0.99142 1.23247 0.99513 1.04347 0.91601 1.21713 0.93378 0.94899 1.17014 1.16972 0.76096 0.84113 0.83372 1.90781 1.52476 1.68621 1.31977 1.48244 1.67532 1.11080 1.05428 1.21660 0.98269 0.96832 0.82795 1.21735 0.98167 0.97233 0.98821 1.20844 0.91491 0.93396 0.89385 0.94911 1.22491 0.97779 0.97596 0.95283 0.91226 1.22423 1.01547 0.95693 0.94750 1.22604 0.97430 0.88191 0.94743 1.44618 1.42374 1.24705 1.23492 1.19997 1.33499 0.94005 0.95038 0.93470 1.27193 0.97762 1.09950 0.92547 1.71006 1.49643 1.10728 1.30308 0.83409 0.76479 0.71345 0.74920 1.24817 1.20875 1.17490 1.21679 0.96323 0.79333 1.01421 0.89069 0.88543 0.89943 0.83834 0.87702 0.85171 0.85453 0.88535 0.89930 0.89224 0.93016 0.92122 0.88670 0.88401 0.95322 0.94707 0.94512 0.88313 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.66 10.49 71.24 0.75 -0.92 16 2 C 0.05 1.26 7.45 45.15 0.34 1.60 16 3 N -0.37 -9.55 12.01 -44.78 -0.54 -10.08 16 4 O 0.10 2.18 10.86 76.91 0.84 3.02 16 5 C 0.06 1.30 7.00 25.48 0.18 1.48 16 6 C -0.12 -1.67 6.15 -11.54 -0.07 -1.74 16 7 C -0.14 -1.35 10.19 30.62 0.31 -1.03 16 8 C -0.15 -1.58 10.24 30.62 0.31 -1.27 16 9 C -0.26 -6.48 4.15 -18.75 -0.08 -6.56 16 10 C 0.61 16.23 7.49 86.65 0.65 16.88 16 11 O -0.56 -18.10 16.47 -4.06 -0.07 -18.17 16 12 N -0.59 -14.36 2.99 -821.80 -2.46 -16.82 16 13 C 0.13 3.05 6.21 86.68 0.54 3.59 16 14 C -0.12 -3.88 5.40 30.43 0.16 -3.71 16 15 C 0.16 5.48 2.57 45.42 0.12 5.60 16 16 H 0.03 1.15 7.91 -2.39 -0.02 1.13 16 17 C -0.11 -3.16 2.83 -10.09 -0.03 -3.19 16 18 H 0.07 2.20 8.12 -2.38 -0.02 2.18 16 19 C -0.11 -2.89 6.54 31.63 0.21 -2.68 16 20 C 0.09 3.69 4.66 86.85 0.40 4.09 16 21 N -0.63 -28.59 3.23 -670.45 -2.17 -30.76 16 22 C -0.30 -16.64 10.22 84.03 0.86 -15.78 16 23 H 0.05 2.86 7.46 -2.91 -0.02 2.83 16 24 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 25 N -0.97 -62.61 13.70 21.65 0.30 -62.31 16 26 Si 1.11 53.23 24.60 68.60 1.69 54.92 16 27 H -0.32 -16.00 7.11 99.48 0.71 -15.29 16 28 H -0.28 -12.61 6.85 99.48 0.68 -11.93 16 29 H -0.25 -10.49 5.31 99.48 0.53 -9.96 16 30 C 0.13 3.08 5.98 85.87 0.51 3.60 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.10 1.04 8.02 -2.39 -0.02 1.02 16 36 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.08 1.92 6.16 -2.38 -0.01 1.91 16 40 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 1.79 8.11 -2.38 -0.02 1.77 16 42 H 0.06 2.17 7.75 -2.39 -0.02 2.15 16 43 H 0.09 2.16 8.11 -2.39 -0.02 2.14 16 44 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.03 1.17 4.03 -2.39 -0.01 1.17 16 46 H 0.03 1.45 6.74 -2.39 -0.02 1.44 16 47 H 0.25 15.90 8.73 -92.71 -0.81 15.09 16 48 H 0.10 1.89 8.07 -2.39 -0.02 1.87 16 49 H 0.10 2.29 6.98 -2.38 -0.02 2.27 16 Total: -1.00 -75.00 385.68 3.94 -71.06 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.72 Total: 13.60 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 5.63 Total: -4.45 kcal Atomic # 7 Polarization: -115.11 SS G_CDS: -4.87 Total: -119.98 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.77 Total: -15.15 kcal Atomic # 14 Polarization: 53.23 SS G_CDS: 1.69 Total: 54.92 kcal Total: -75.00 3.94 -71.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036775310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.907 kcal (2) G-P(sol) polarization free energy of solvation -75.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds