Wall clock time and date at job start Wed Apr 1 2020 02:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34869 * 119.09722 * 2 1 4 4 C 1.41670 * 119.34097 * 180.02562 * 3 2 1 5 5 O 1.22080 * 121.06967 * 180.02562 * 4 3 2 6 6 C 1.47104 * 117.86214 * 359.97438 * 4 3 2 7 7 C 1.47288 * 120.88408 * 180.02562 * 6 4 3 8 8 O 1.21615 * 119.99613 * 351.28663 * 7 6 4 9 9 N 1.34773 * 120.00127 * 171.28730 * 7 6 4 10 10 C 1.48164 * 127.02600 * 173.79330 * 9 7 6 11 11 C 1.55038 * 103.31256 * 141.01472 * 10 9 7 12 12 C 1.54154 * 102.73720 * 36.99460 * 11 10 9 13 13 C 1.47612 * 127.02466 * 353.84019 * 9 7 6 14 14 C 1.52495 * 110.05450 * 219.39230 * 12 11 10 15 15 C 1.53131 * 109.58100 * 178.26921 * 14 12 11 16 16 C 1.53128 * 109.32207 * 60.51691 * 15 14 12 17 17 N 1.46935 * 108.88031 * 304.91665 * 16 15 14 18 18 C 1.36933 * 120.68197 * 234.04435 * 17 16 15 19 19 H 1.08003 * 120.00232 * 26.50731 * 18 17 16 20 20 C 1.38814 * 120.00122 * 206.50746 * 18 17 16 21 21 N 1.31625 * 119.99726 * 16.21153 * 20 18 17 22 22 Si 1.86796 * 120.00236 * 196.20703 * 20 18 17 23 23 H 1.48503 * 109.46666 * 90.00008 * 22 20 18 24 24 H 1.48501 * 109.47182 * 209.99886 * 22 20 18 25 25 H 1.48499 * 109.47412 * 330.00160 * 22 20 18 26 26 C 1.47031 * 118.63332 * 54.02186 * 17 16 15 27 27 C 1.37997 * 118.23475 * 0.28223 * 6 4 3 28 28 N 1.34343 * 120.36972 * 359.43588 * 27 6 4 29 29 H 0.97001 * 118.80865 * 180.26981 * 28 27 6 30 30 H 1.08998 * 109.47278 * 90.00620 * 1 2 3 31 31 H 1.09005 * 109.46663 * 210.00227 * 1 2 3 32 32 H 1.08994 * 109.47522 * 330.00178 * 1 2 3 33 33 H 1.07995 * 120.33224 * 359.97438 * 3 2 1 34 34 H 1.08995 * 110.64821 * 259.47330 * 10 9 7 35 35 H 1.09000 * 110.64693 * 22.39086 * 10 9 7 36 36 H 1.09003 * 110.76171 * 278.67660 * 11 10 9 37 37 H 1.09006 * 110.75758 * 155.30326 * 11 10 9 38 38 H 1.08995 * 109.97397 * 85.96519 * 13 9 7 39 39 H 1.08996 * 110.00560 * 324.70243 * 13 9 7 40 40 H 1.08997 * 109.44804 * 298.29217 * 14 12 11 41 41 H 1.08997 * 109.45080 * 58.24288 * 14 12 11 42 42 H 1.08997 * 109.50233 * 180.43666 * 15 14 12 43 43 H 1.09009 * 109.50200 * 300.54627 * 15 14 12 44 44 H 1.09006 * 109.56931 * 185.10053 * 16 15 14 45 45 H 1.08999 * 109.57632 * 64.73950 * 16 15 14 46 46 H 0.96996 * 119.99711 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.58173 * 187.40866 * 26 17 16 48 48 H 1.09002 * 109.58147 * 67.00131 * 26 17 16 49 49 H 1.07998 * 119.81307 * 179.70470 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1785 0.0000 4 6 3.5795 1.1845 -0.0006 5 8 4.2051 2.2328 -0.0001 6 6 4.2725 -0.1131 -0.0005 7 6 5.7437 -0.1845 -0.0005 8 8 6.4014 0.8259 -0.1601 9 7 6.3609 -1.3694 0.1763 10 6 7.8139 -1.6421 0.0779 11 6 8.0673 -2.6474 1.2306 12 6 6.7918 -3.5130 1.2133 13 6 5.7272 -2.6611 0.5067 14 6 6.3559 -3.8304 2.6397 15 6 5.0650 -4.6536 2.6106 16 6 5.3170 -5.9649 1.8610 17 7 5.8538 -5.6553 0.5287 18 6 5.2569 -6.1539 -0.5983 19 1 4.2049 -6.3986 -0.5890 20 6 6.0037 -6.3449 -1.7527 21 7 7.3184 -6.3582 -1.6913 22 14 5.1428 -6.5832 -3.3933 23 1 4.9386 -5.2628 -4.0414 24 1 5.9787 -7.4414 -4.2708 25 1 3.8269 -7.2348 -3.1718 26 6 7.0449 -4.7988 0.4306 27 6 3.5077 -1.2617 -0.0060 28 7 2.1665 -1.1846 0.0003 29 1 1.6511 -2.0064 0.0003 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 1.6136 2.1083 -0.0004 34 1 8.0561 -2.0920 -0.8849 35 1 8.3876 -0.7277 0.2287 36 1 8.1678 -2.1263 2.1827 37 1 8.9492 -3.2548 1.0266 38 1 5.3978 -3.1583 -0.4056 39 1 4.8779 -2.5007 1.1707 40 1 7.1386 -4.4005 3.1400 41 1 6.1813 -2.9008 3.1813 42 1 4.7504 -4.8732 3.6308 43 1 4.2841 -4.0880 2.1022 44 1 4.3803 -6.5129 1.7589 45 1 6.0369 -6.5688 2.4134 46 1 7.8402 -6.4920 -2.4979 47 1 7.2367 -4.5583 -0.6151 48 1 7.9050 -5.3196 0.8515 49 1 3.9900 -2.2279 -0.0109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040479280.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:45 Heat of formation + Delta-G solvation = 2.363878 kcal Electronic energy + Delta-G solvation = -32204.108642 eV Core-core repulsion = 28132.675846 eV Total energy + Delta-G solvation = -4071.432796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.14647 -39.87553 -38.24957 -37.38492 -35.61580 -33.69590 -33.16925 -31.86844 -30.97621 -30.15685 -29.19962 -27.85665 -26.07785 -25.46937 -23.98944 -23.05622 -22.34327 -22.05157 -20.82135 -19.94379 -18.62419 -18.01725 -17.40444 -16.89052 -16.49611 -15.73071 -15.57458 -15.34038 -14.98737 -14.79301 -14.25521 -14.14613 -14.03779 -13.71538 -13.52511 -13.27322 -13.21669 -13.13745 -12.98255 -12.81492 -12.65806 -12.50229 -12.38001 -12.21326 -11.70321 -11.64613 -11.24459 -11.08383 -10.99185 -10.75706 -10.51121 -10.39444 -10.25534 -9.95146 -9.79661 -9.56808 -9.55393 -9.51630 -9.03996 -8.62511 -8.33074 -8.05633 -6.84553 -5.93936 -3.36823 0.84667 1.28075 2.59487 3.16654 3.24740 3.27188 3.31202 3.35178 3.96211 4.08144 4.34019 4.47502 4.58365 4.73456 4.84204 4.97397 4.98201 5.02963 5.13004 5.26002 5.31938 5.36284 5.42223 5.52569 5.56641 5.61334 5.63376 5.73484 5.78002 5.88785 5.95790 6.10208 6.15622 6.22059 6.25680 6.27575 6.36852 6.47454 6.49128 6.59480 6.62030 6.67531 6.73826 6.82495 6.83515 7.18409 7.51229 7.63427 7.91834 8.22034 8.28203 8.62315 9.05302 9.68638 10.25279 11.13954 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009854 B = 0.004321 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.878071 B = 6478.964234 C = 7308.601813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.155 3.845 3 C -0.275 4.275 4 C 0.410 3.590 5 O -0.486 6.486 6 C -0.301 4.301 7 C 0.591 3.409 8 O -0.525 6.525 9 N -0.624 5.624 10 C 0.109 3.891 11 C -0.123 4.123 12 C -0.091 4.091 13 C 0.104 3.896 14 C -0.097 4.097 15 C -0.136 4.136 16 C 0.143 3.857 17 N -0.592 5.592 18 C -0.257 4.257 19 H 0.067 0.933 20 C 0.006 3.994 21 N -0.899 5.899 22 Si 0.897 3.103 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.185 3.815 27 C 0.152 3.848 28 N -0.577 5.577 29 H 0.422 0.578 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.150 0.850 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.018 0.982 46 H 0.256 0.744 47 H 0.095 0.905 48 H 0.023 0.977 49 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.902 5.171 6.520 14.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.047 3.953 3 C -0.299 4.299 4 C 0.297 3.703 5 O -0.368 6.368 6 C -0.312 4.312 7 C 0.381 3.619 8 O -0.401 6.401 9 N -0.359 5.359 10 C -0.013 4.013 11 C -0.162 4.162 12 C -0.094 4.094 13 C -0.018 4.018 14 C -0.135 4.135 15 C -0.175 4.175 16 C 0.017 3.983 17 N -0.315 5.315 18 C -0.387 4.387 19 H 0.084 0.916 20 C -0.193 4.193 21 N -0.543 5.543 22 Si 0.727 3.273 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.058 3.942 27 C 0.022 3.978 28 N -0.183 5.183 29 H 0.259 0.741 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.168 0.832 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.036 0.964 46 H 0.066 0.934 47 H 0.113 0.887 48 H 0.041 0.959 49 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -11.159 6.372 6.264 14.296 hybrid contribution -0.670 -0.819 -0.889 1.382 sum -11.829 5.553 5.375 14.130 Atomic orbital electron populations 1.21097 0.88022 1.04809 1.04341 1.20337 0.94800 0.85755 0.94369 1.22213 0.96257 0.97211 1.14212 1.18140 0.88236 0.87830 0.76139 1.90796 1.70027 1.33276 1.42663 1.22413 0.94295 0.94995 1.19448 1.17081 0.86005 0.81761 0.77064 1.90812 1.66050 1.33442 1.49795 1.48850 1.08947 1.07806 1.70281 1.22442 0.80835 0.98904 0.99097 1.22710 0.98449 0.96958 0.98046 1.21843 0.93312 0.97947 0.96282 1.22596 0.96297 0.82856 1.00032 1.21401 0.97874 0.98838 0.95341 1.22075 0.97023 0.99092 0.99323 1.20908 0.97189 0.92973 0.87265 1.44110 1.32051 1.54966 1.00364 1.19156 0.92217 1.38452 0.88830 0.91555 1.25013 0.95287 1.00066 0.98973 1.69987 1.03910 1.52773 1.27593 0.86378 0.78865 0.77766 0.84285 1.21417 1.21624 1.20487 1.20869 0.88156 0.85265 0.99867 1.23855 0.82501 1.02317 0.89176 1.40878 1.06190 1.08916 1.62317 0.74125 0.89241 0.90380 0.88880 0.83242 0.90749 0.90280 0.91496 0.89801 0.89524 0.91240 0.92062 0.93396 0.93004 0.92839 0.92923 0.96389 0.93423 0.88675 0.95895 0.78517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.51 10.03 36.00 0.36 -0.15 16 2 C 0.15 1.31 6.79 -82.13 -0.56 0.75 16 3 C -0.27 -3.36 9.57 -39.47 -0.38 -3.73 16 4 C 0.41 7.24 6.96 -34.68 -0.24 7.00 16 5 O -0.49 -10.83 16.45 -14.91 -0.25 -11.08 16 6 C -0.30 -5.01 6.04 -102.71 -0.62 -5.63 16 7 C 0.59 11.54 7.82 -12.58 -0.10 11.45 16 8 O -0.52 -12.39 15.81 -14.49 -0.23 -12.62 16 9 N -0.62 -10.71 3.30 -171.15 -0.56 -11.28 16 10 C 0.11 1.78 7.12 -2.05 -0.01 1.77 16 11 C -0.12 -1.84 6.15 -25.05 -0.15 -1.99 16 12 C -0.09 -1.47 0.62 -154.05 -0.09 -1.56 16 13 C 0.10 1.63 3.66 -3.14 -0.01 1.61 16 14 C -0.10 -1.40 4.43 -26.92 -0.12 -1.52 16 15 C -0.14 -1.92 5.86 -26.60 -0.16 -2.08 16 16 C 0.14 2.53 6.50 -3.74 -0.02 2.51 16 17 N -0.59 -12.52 2.81 -172.60 -0.48 -13.01 16 18 C -0.26 -6.08 9.61 -15.06 -0.14 -6.22 16 19 H 0.07 1.53 7.88 -52.48 -0.41 1.12 16 20 C 0.01 0.15 4.95 -17.43 -0.09 0.06 16 21 N -0.90 -23.70 11.04 55.49 0.61 -23.09 16 22 Si 0.90 19.77 29.58 -169.99 -5.03 14.75 16 23 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 C 0.18 3.74 3.62 -3.93 -0.01 3.73 16 27 C 0.15 1.84 9.60 -16.54 -0.16 1.68 16 28 N -0.58 -4.79 5.16 -9.00 -0.05 -4.84 16 29 H 0.42 1.98 8.70 -40.82 -0.35 1.62 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.19 8.12 -51.93 -0.42 -0.24 16 32 H 0.09 0.32 8.05 -51.93 -0.42 -0.10 16 33 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.08 1.30 7.81 -51.93 -0.41 0.89 16 36 H 0.07 0.94 7.84 -51.93 -0.41 0.53 16 37 H 0.08 1.22 7.79 -51.93 -0.40 0.81 16 38 H 0.09 1.50 6.96 -51.93 -0.36 1.14 16 39 H 0.07 0.96 4.23 -51.93 -0.22 0.74 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.72 6.58 -51.92 -0.34 0.38 16 44 H 0.05 0.91 7.93 -51.93 -0.41 0.50 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 47 H 0.10 2.22 5.92 -51.93 -0.31 1.91 16 48 H 0.02 0.51 8.09 -51.93 -0.42 0.09 16 49 H 0.20 2.33 3.47 -52.49 -0.18 2.15 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -35.13 379.38 -9.94 -45.07 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.16 Total: 2.72 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -2.51 Total: 7.66 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.48 Total: -52.21 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.47 Total: -23.70 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.13 -9.94 -45.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040479280.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.434 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds