Wall clock time and date at job start Wed Apr 1 2020 02:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41381 * 126.79718 * 2 1 4 4 C 1.35460 * 103.98322 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.77650 * 179.97438 * 4 3 2 6 6 C 1.50707 * 115.56139 * 39.36735 * 5 4 3 7 7 O 1.21275 * 119.99950 * 258.66071 * 6 5 4 8 8 N 1.34777 * 119.99614 * 78.66226 * 6 5 4 9 9 C 1.44793 * 120.18203 * 4.95954 * 8 6 5 10 10 C 1.51516 * 112.22785 * 264.55582 * 9 8 6 11 11 C 1.51311 * 113.25195 * 285.36526 * 10 9 8 12 12 H 1.08993 * 111.31237 * 186.10453 * 11 10 9 13 13 C 1.54715 * 106.48247 * 307.66819 * 11 10 9 14 14 C 1.54235 * 104.37795 * 89.11687 * 13 11 10 15 15 C 1.50868 * 105.27109 * 11.56219 * 14 13 11 16 16 H 1.09001 * 106.52912 * 122.53072 * 15 14 13 17 17 C 1.49813 * 120.17721 * 184.69372 * 8 6 5 18 18 N 1.48658 * 109.01468 * 62.92315 * 11 10 9 19 19 C 1.36936 * 127.84221 * 97.33664 * 18 11 10 20 20 H 1.07994 * 120.00106 * 0.02562 * 19 18 11 21 21 C 1.38815 * 119.99862 * 180.02562 * 19 18 11 22 22 N 1.31621 * 120.00024 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99843 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47445 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47184 * 119.99891 * 23 21 19 26 26 H 1.48501 * 109.47281 * 239.99649 * 23 21 19 27 27 C 1.52993 * 117.49730 * 185.05890 * 5 4 3 28 28 C 1.52994 * 60.03499 * 107.50281 * 27 5 4 29 29 O 1.34040 * 106.44583 * 0.24111 * 4 3 2 30 30 N 1.20921 * 111.56474 * 359.56601 * 29 4 3 31 31 H 1.09000 * 109.47728 * 90.00311 * 1 2 3 32 32 H 1.09007 * 109.47301 * 210.00172 * 1 2 3 33 33 H 1.09004 * 109.47494 * 329.99932 * 1 2 3 34 34 H 1.07996 * 128.01293 * 0.02985 * 3 2 1 35 35 H 1.08999 * 108.92910 * 25.26683 * 9 8 6 36 36 H 1.08997 * 108.93085 * 143.84966 * 9 8 6 37 37 H 1.08996 * 108.72588 * 46.34210 * 10 9 8 38 38 H 1.09001 * 108.72596 * 164.51357 * 10 9 8 39 39 H 1.09002 * 110.45073 * 207.83823 * 13 11 10 40 40 H 1.09001 * 110.45179 * 330.26645 * 13 11 10 41 41 H 1.09009 * 110.28173 * 130.50565 * 14 13 11 42 42 H 1.08996 * 110.28432 * 252.60867 * 14 13 11 43 43 H 1.09005 * 109.54763 * 270.54720 * 17 8 6 44 44 H 1.08994 * 109.55052 * 30.82491 * 17 8 6 45 45 H 0.97002 * 119.99594 * 180.02562 * 22 21 19 46 46 H 1.08997 * 117.49977 * 359.97438 * 27 5 4 47 47 H 1.09007 * 117.49812 * 215.00349 * 27 5 4 48 48 H 1.09003 * 117.50588 * 107.47306 * 28 27 5 49 49 H 1.08997 * 117.50013 * 252.47878 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3538 1.1321 0.0000 4 6 3.6024 0.6069 -0.0006 5 6 4.9021 1.3697 -0.0014 6 6 4.9313 2.6054 0.8608 7 8 4.8076 3.7007 0.3550 8 7 5.0951 2.4932 2.1939 9 6 5.3503 1.1984 2.7895 10 6 4.0831 0.5414 3.2975 11 6 3.5633 1.1568 4.5784 12 1 2.7163 0.5952 4.9724 13 6 4.7474 1.1639 5.5740 14 6 5.4557 2.5097 5.3172 15 6 4.5100 3.2960 4.4433 16 1 4.2970 4.2242 4.9736 17 6 5.0199 3.7085 3.0667 18 7 3.1991 2.5749 4.3214 19 6 1.9589 3.0878 4.0492 20 1 1.1018 2.4323 4.0027 21 6 1.8033 4.4501 3.8332 22 7 2.8477 5.2491 3.8904 23 14 0.1114 5.1498 3.4627 24 1 -0.8879 4.0512 3.4552 25 1 -0.2525 6.1433 4.5047 26 1 0.1294 5.8110 2.1331 27 6 6.1955 0.5614 -0.1216 28 6 5.7045 1.3982 -1.3046 29 8 3.4538 -0.7252 -0.0063 30 7 2.2869 -1.0422 -0.0006 31 1 -0.3634 -0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 2.0708 2.1744 0.0004 35 1 5.8101 0.5504 2.0433 36 1 6.0425 1.3225 3.6222 37 1 3.3132 0.6265 2.5307 38 1 4.2837 -0.5152 3.4751 39 1 4.3826 1.1152 6.6000 40 1 5.4213 0.3317 5.3704 41 1 5.6245 3.0335 6.2581 42 1 6.4010 2.3465 4.7998 43 1 6.0109 4.1530 3.1592 44 1 4.3339 4.4320 2.6264 45 1 2.7389 6.2011 3.7399 46 1 6.1064 -0.5221 -0.1997 47 1 7.0676 0.9231 0.4232 48 1 6.2532 2.3107 -1.5379 49 1 5.2927 0.8652 -2.1616 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045834721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:30 Heat of formation + Delta-G solvation = 107.056005 kcal Electronic energy + Delta-G solvation = -33766.450204 eV Core-core repulsion = 29699.557199 eV Total energy + Delta-G solvation = -4066.893005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.71268 -40.21925 -38.53881 -36.39406 -34.55908 -34.20270 -32.96341 -31.60810 -31.25563 -29.45064 -28.51816 -27.41601 -25.96335 -24.77930 -23.62318 -23.10013 -22.47633 -21.95533 -20.39614 -19.39026 -19.26673 -18.33955 -17.41450 -17.06444 -16.97590 -16.16095 -15.56214 -15.22043 -14.81158 -14.68808 -14.19636 -14.08211 -13.72974 -13.46844 -13.23843 -13.14167 -12.83169 -12.78394 -12.56517 -12.28681 -12.05502 -11.94474 -11.68792 -11.52146 -11.34426 -11.27902 -11.22604 -10.97069 -10.87940 -10.85377 -10.77749 -10.51709 -10.20669 -9.95628 -9.76859 -9.73046 -9.60374 -9.46169 -9.08202 -8.92494 -8.65625 -7.82083 -6.89626 -5.73832 -3.09284 1.61358 2.46160 2.68355 3.37901 3.42476 3.44253 3.46471 3.57023 3.78344 4.36877 4.40211 4.43739 4.69691 4.78595 4.95581 5.18914 5.29242 5.31729 5.42003 5.44786 5.49921 5.53749 5.56969 5.58337 5.61785 5.68317 5.70656 5.77386 5.87018 5.93439 5.94353 6.00487 6.04844 6.13204 6.22260 6.24657 6.36748 6.43274 6.46601 6.58865 6.66019 6.79687 6.94023 7.03602 7.18216 7.46067 7.58908 7.80604 8.17429 8.19993 8.45616 8.77062 9.11545 9.73594 10.48185 11.35227 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009359 B = 0.006223 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2991.072018 B = 4498.155062 C = 5452.180044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.022 3.978 3 C -0.200 4.200 4 C 0.016 3.984 5 C -0.080 4.080 6 C 0.553 3.447 7 O -0.536 6.536 8 N -0.577 5.577 9 C 0.103 3.897 10 C -0.149 4.149 11 C 0.151 3.849 12 H 0.058 0.942 13 C -0.130 4.130 14 C -0.123 4.123 15 C 0.141 3.859 16 H 0.099 0.901 17 C 0.127 3.873 18 N -0.578 5.578 19 C -0.204 4.204 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.919 5.919 23 Si 0.908 3.092 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.290 1.290 27 C -0.155 4.155 28 C -0.130 4.130 29 O 0.096 5.904 30 N -0.369 5.369 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.171 0.829 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.034 0.966 44 H 0.127 0.873 45 H 0.253 0.747 46 H 0.111 0.889 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.310 -10.377 -4.698 13.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.136 4.136 3 C -0.221 4.221 4 C -0.048 4.048 5 C -0.085 4.085 6 C 0.337 3.663 7 O -0.413 6.413 8 N -0.307 5.307 9 C -0.021 4.021 10 C -0.189 4.189 11 C 0.043 3.957 12 H 0.076 0.924 13 C -0.169 4.169 14 C -0.161 4.161 15 C 0.035 3.965 16 H 0.117 0.883 17 C 0.006 3.994 18 N -0.301 5.301 19 C -0.331 4.331 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.207 1.207 25 H -0.218 1.218 26 H -0.217 1.217 27 C -0.192 4.192 28 C -0.168 4.168 29 O 0.030 5.970 30 N -0.075 5.075 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.188 0.812 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.144 0.856 45 H 0.064 0.936 46 H 0.129 0.871 47 H 0.127 0.873 48 H 0.131 0.869 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.827 -10.854 -4.955 13.279 hybrid contribution -1.081 1.113 -0.128 1.557 sum 4.747 -9.741 -5.084 11.969 Atomic orbital electron populations 1.20159 0.86080 1.04032 1.02973 1.23498 0.98935 0.88696 1.02468 1.22393 0.90843 1.01422 1.07473 1.22624 0.95453 0.83241 1.03470 1.19446 0.88165 0.97364 1.03518 1.18781 0.77532 0.87503 0.82453 1.90683 1.50352 1.27148 1.73132 1.48409 1.67835 1.09332 1.05168 1.21134 0.97712 0.84722 0.98557 1.22021 0.98140 0.97854 1.00932 1.21089 0.94258 0.88409 0.91927 0.92429 1.22672 0.97821 0.96820 0.99604 1.21933 0.98091 0.96528 0.99590 1.20895 0.84844 0.97875 0.92873 0.88327 1.23333 0.99519 0.85559 0.90946 1.45364 1.02825 0.99613 1.82300 1.18966 0.83227 0.91125 1.39812 0.90462 1.24643 0.97334 0.95909 1.02529 1.69685 1.27160 1.03549 1.56349 0.86083 0.83384 0.78905 0.77674 1.20740 1.21845 1.21735 1.23186 0.95138 0.99244 1.01668 1.23154 1.00214 1.02569 0.90871 1.84736 1.21769 1.22228 1.68220 1.73776 0.89160 1.23818 1.20780 0.90450 0.90710 0.89688 0.81178 0.91659 0.90120 0.92362 0.93083 0.92437 0.92133 0.92161 0.92237 0.94784 0.85572 0.93648 0.87091 0.87292 0.86945 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.47 36.00 0.38 -0.59 16 2 C 0.02 0.36 7.33 -82.10 -0.60 -0.24 16 3 C -0.20 -3.54 10.40 -39.38 -0.41 -3.95 16 4 C 0.02 0.26 5.23 -35.30 -0.18 0.07 16 5 C -0.08 -1.25 1.44 -156.77 -0.23 -1.47 16 6 C 0.55 10.88 6.60 -10.98 -0.07 10.81 16 7 O -0.54 -12.55 16.69 5.56 0.09 -12.46 16 8 N -0.58 -11.12 2.86 -173.48 -0.50 -11.62 16 9 C 0.10 1.66 4.91 -5.71 -0.03 1.63 16 10 C -0.15 -2.60 4.97 -28.33 -0.14 -2.74 16 11 C 0.15 2.90 4.02 -66.69 -0.27 2.63 16 12 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.13 -2.09 6.01 -25.18 -0.15 -2.24 16 14 C -0.12 -2.10 5.78 -27.16 -0.16 -2.26 16 15 C 0.14 3.04 2.00 -67.25 -0.13 2.91 16 16 H 0.10 2.49 6.21 -51.93 -0.32 2.16 16 17 C 0.13 2.78 5.72 -2.46 -0.01 2.77 16 18 N -0.58 -13.44 2.77 -155.16 -0.43 -13.87 16 19 C -0.20 -5.33 10.43 -15.06 -0.16 -5.49 16 20 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -25.12 8.33 55.49 0.46 -24.66 16 23 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 C -0.16 -1.78 7.81 -26.74 -0.21 -1.99 16 28 C -0.13 -1.61 9.85 -26.70 -0.26 -1.88 16 29 O 0.10 1.55 10.97 17.18 0.19 1.73 16 30 N -0.37 -6.18 12.07 33.42 0.40 -5.78 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.17 3.25 8.06 -52.49 -0.42 2.83 16 35 H 0.07 0.91 4.75 -51.93 -0.25 0.66 16 36 H 0.08 1.22 3.93 -51.93 -0.20 1.01 16 37 H 0.06 1.18 6.30 -51.93 -0.33 0.85 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.82 7.39 -51.93 -0.38 0.43 16 41 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 42 H 0.06 0.90 6.14 -51.93 -0.32 0.58 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.13 3.35 5.46 -51.93 -0.28 3.07 16 45 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 46 H 0.11 1.10 8.00 -51.93 -0.42 0.69 16 47 H 0.11 1.14 7.90 -51.92 -0.41 0.73 16 48 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 49 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -30.38 374.73 -9.00 -39.38 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -7.11 Total: 7.22 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.74 Total: -2.36 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.06 Total: -55.92 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.28 Total: -10.73 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.38 -9.00 -39.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045834721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.440 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds