Wall clock time and date at job start Wed Apr 1 2020 03:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30014 * 127.33381 * 2 1 4 4 O 1.20658 * 112.30369 * 180.30717 * 3 2 1 5 5 C 1.33496 * 113.15635 * 359.70958 * 4 3 2 6 6 C 1.50694 * 126.83348 * 180.02562 * 5 4 3 7 7 C 1.53004 * 117.49686 * 8.59200 * 6 5 4 8 8 C 1.52998 * 60.00191 * 252.51635 * 7 6 5 9 9 C 1.37368 * 106.33905 * 0.02562 * 5 4 3 10 10 C 1.47394 * 128.56413 * 179.97438 * 9 5 4 11 11 O 1.21609 * 120.00271 * 90.00072 * 10 9 5 12 12 N 1.34784 * 119.99794 * 270.00323 * 10 9 5 13 13 C 1.46497 * 119.99775 * 179.97438 * 12 10 9 14 14 H 1.08998 * 112.88611 * 26.84194 * 13 12 10 15 15 C 1.53949 * 113.66490 * 255.49123 * 13 12 10 16 16 C 1.53949 * 87.29670 * 220.70199 * 15 13 12 17 17 H 1.08998 * 113.65772 * 139.29939 * 16 15 13 18 18 N 1.46490 * 113.66186 * 270.26195 * 16 15 13 19 19 C 1.36935 * 120.00121 * 255.49183 * 18 16 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.46685 * 269.99637 * 23 21 19 25 25 H 1.48494 * 109.47357 * 29.99716 * 23 21 19 26 26 H 1.48502 * 109.47120 * 150.00435 * 23 21 19 27 27 C 1.52909 * 86.78310 * 24.73841 * 16 15 13 28 28 C 1.52906 * 121.13880 * 209.38178 * 27 16 15 29 29 C 1.53948 * 86.78398 * 209.37167 * 28 27 16 30 30 C 1.52906 * 121.14379 * 100.81107 * 27 16 15 31 31 H 1.09004 * 109.47213 * 270.14456 * 1 2 3 32 32 H 1.08998 * 109.47287 * 30.14306 * 1 2 3 33 33 H 1.09004 * 109.47129 * 150.14931 * 1 2 3 34 34 H 1.08995 * 115.55438 * 154.30554 * 6 5 4 35 35 H 1.08999 * 117.49758 * 0.02562 * 7 6 5 36 36 H 1.08994 * 117.49924 * 145.02132 * 7 6 5 37 37 H 1.08997 * 117.49825 * 252.51358 * 8 7 6 38 38 H 1.08999 * 117.49696 * 107.49200 * 8 7 6 39 39 H 0.97002 * 120.00112 * 0.02562 * 12 10 9 40 40 H 1.08997 * 113.57559 * 106.09649 * 15 13 12 41 41 H 1.09002 * 113.64819 * 335.32070 * 15 13 12 42 42 H 0.97000 * 120.00577 * 75.49783 * 18 16 15 43 43 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 44 44 H 1.08995 * 113.66414 * 323.84349 * 28 27 16 45 45 H 1.09002 * 113.66550 * 94.90218 * 28 27 16 46 46 H 1.09008 * 113.58200 * 270.13155 * 29 28 27 47 47 H 1.08994 * 113.58337 * 139.33555 * 29 28 27 48 48 H 1.08997 * 113.66670 * 265.10082 * 30 27 16 49 49 H 1.09002 * 113.65781 * 36.15732 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7209 -0.0060 5 6 3.6495 -0.6007 -0.0049 6 6 4.9712 -1.3245 -0.0105 7 6 6.2364 -0.4865 0.1844 8 6 5.9104 -1.0709 -1.1914 9 6 2.3992 -1.1696 0.0025 10 6 2.0402 -2.5991 0.0060 11 8 1.8976 -3.1877 1.0606 12 7 1.8699 -3.2541 -1.1596 13 6 1.5136 -4.6751 -1.1560 14 1 0.9756 -4.9750 -0.2567 15 6 2.6854 -5.6069 -1.5146 16 6 1.6827 -6.4283 -2.3452 17 1 2.0831 -6.7728 -3.2986 18 7 1.0236 -7.4935 -1.5857 19 6 1.4014 -8.7974 -1.7659 20 1 2.1855 -9.0403 -2.4677 21 6 0.7765 -9.8069 -1.0466 22 7 -0.1794 -9.5108 -0.1916 23 14 1.2924 -11.5854 -1.2920 24 1 0.4769 -12.1924 -2.3746 25 1 2.7286 -11.6372 -1.6658 26 1 1.0814 -12.3405 -0.0308 27 6 0.8540 -5.1477 -2.4521 28 6 -0.6679 -5.2001 -2.5913 29 6 -0.5554 -3.8767 -3.3697 30 6 0.8875 -4.2873 -3.7157 31 1 -0.3634 0.0026 1.0277 32 1 -0.3634 0.8887 -0.5160 33 1 -0.3633 -0.8913 -0.5115 34 1 4.9602 -2.3269 0.4175 35 1 6.1126 0.5883 0.3172 36 1 7.0579 -0.9374 0.7410 37 1 6.5175 -1.9063 -1.5401 38 1 5.5723 -0.3805 -1.9642 39 1 1.9839 -2.7848 -2.0008 40 1 3.0897 -6.1480 -0.6592 41 1 3.4583 -5.1264 -2.1146 42 1 0.3196 -7.2754 -0.9551 43 1 -0.4470 -8.5873 -0.0640 44 1 -1.0234 -6.0343 -3.1959 45 1 -1.1974 -5.1063 -1.6432 46 1 -0.6169 -2.9916 -2.7363 47 1 -1.2135 -3.8236 -4.2370 48 1 1.6005 -3.4644 -3.6658 49 1 0.9690 -4.8651 -4.6363 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078683055.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:38 Heat of formation + Delta-G solvation = 106.770190 kcal Electronic energy + Delta-G solvation = -30991.694599 eV Core-core repulsion = 26924.789200 eV Total energy + Delta-G solvation = -4066.905399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.12138 -40.78661 -38.93757 -37.76420 -35.28476 -34.79600 -34.23449 -32.69366 -31.83834 -29.39464 -29.03448 -25.73230 -25.62965 -24.38935 -23.97905 -23.62669 -22.87286 -22.69336 -20.74574 -20.32614 -19.80178 -18.65326 -17.98499 -17.50601 -17.40166 -16.72645 -16.19108 -16.08015 -15.59932 -15.16192 -14.67748 -14.48235 -14.03112 -13.72725 -13.64617 -13.60030 -13.57780 -13.27318 -12.89369 -12.73010 -12.42123 -12.24988 -12.05748 -12.01897 -11.82397 -11.74836 -11.56965 -11.49398 -10.96487 -10.87193 -10.73820 -10.60628 -10.38525 -10.16045 -10.07103 -10.00302 -9.92074 -9.69423 -9.43585 -9.18303 -8.87484 -8.81221 -7.07601 -6.13167 -3.14216 0.98880 1.65986 2.34074 2.51217 3.16098 3.39055 3.50420 3.55135 3.69395 3.78489 3.91579 4.28554 4.42371 4.46403 4.53377 4.57128 4.69141 4.77132 4.81116 4.93952 5.01307 5.10308 5.18462 5.19902 5.20324 5.27968 5.33713 5.36230 5.46599 5.56304 5.58534 5.62787 5.64941 5.74394 5.75563 5.83069 5.88160 5.92948 5.96778 6.09492 6.22805 6.32650 6.48106 6.56193 6.60235 6.68742 6.93404 7.47777 7.79577 7.95643 8.13839 8.72214 9.18161 10.04472 10.18477 11.34623 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.002887 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.492902 B = 9697.070478 C =10510.510227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.056 3.944 3 N -0.356 5.356 4 O 0.095 5.905 5 C 0.050 3.950 6 C -0.096 4.096 7 C -0.161 4.161 8 C -0.156 4.156 9 C -0.242 4.242 10 C 0.596 3.404 11 O -0.521 6.521 12 N -0.702 5.702 13 C 0.152 3.848 14 H 0.114 0.886 15 C -0.182 4.182 16 C 0.192 3.808 17 H 0.068 0.932 18 N -0.712 5.712 19 C -0.335 4.335 20 H 0.066 0.934 21 C -0.042 4.042 22 N -0.940 5.940 23 Si 1.083 2.917 24 H -0.295 1.295 25 H -0.294 1.294 26 H -0.288 1.288 27 C -0.127 4.127 28 C -0.116 4.116 29 C -0.141 4.141 30 C -0.109 4.109 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.398 0.602 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.369 0.631 43 H 0.256 0.744 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.059 0.941 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.623 21.369 -5.540 23.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 N -0.063 5.063 4 O 0.034 5.966 5 C -0.014 4.014 6 C -0.115 4.115 7 C -0.198 4.198 8 C -0.193 4.193 9 C -0.249 4.249 10 C 0.379 3.621 11 O -0.397 6.397 12 N -0.352 5.352 13 C 0.049 3.951 14 H 0.131 0.869 15 C -0.224 4.224 16 C 0.079 3.921 17 H 0.086 0.914 18 N -0.351 5.351 19 C -0.466 4.466 20 H 0.084 0.916 21 C -0.240 4.240 22 N -0.585 5.585 23 Si 0.913 3.087 24 H -0.223 1.223 25 H -0.221 1.221 26 H -0.214 1.214 27 C -0.130 4.130 28 C -0.153 4.153 29 C -0.178 4.178 30 C -0.147 4.147 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.159 0.841 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.234 0.766 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.203 0.797 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.187 20.554 -4.426 22.220 hybrid contribution 0.063 1.194 -0.552 1.317 sum 7.251 21.749 -4.978 23.460 Atomic orbital electron populations 1.20239 0.85035 1.04140 1.04132 1.24748 0.98595 0.86461 1.00816 1.73617 0.89020 1.23215 1.20434 1.84492 1.21561 1.22386 1.68179 1.23524 0.95540 0.83406 0.98884 1.20557 0.84060 0.99753 1.07086 1.23096 0.96812 1.00232 0.99667 1.23138 1.00686 1.03902 0.91550 1.21932 0.92451 0.95576 1.14922 1.16892 0.77115 0.83589 0.84475 1.90865 1.49853 1.67841 1.31117 1.46078 1.69718 1.11805 1.07647 1.22343 0.97426 0.77441 0.97905 0.86864 1.24302 0.97360 0.98562 1.02178 1.20697 0.91023 0.86084 0.94310 0.91402 1.42089 1.42893 1.02342 1.47813 1.20071 1.19107 0.84101 1.23335 0.91557 1.25782 0.97395 1.04153 0.96653 1.70850 1.30460 1.20353 1.36849 0.83199 0.74726 0.74814 0.75914 1.22307 1.22116 1.21378 1.23485 0.96516 0.98552 0.94406 1.22569 0.95265 0.97044 1.00447 1.22865 0.96759 0.98091 1.00094 1.22516 0.96631 0.98430 0.97138 0.89466 0.89865 0.89720 0.84124 0.87632 0.87267 0.87076 0.87994 0.76622 0.90857 0.91074 0.79689 0.93269 0.89378 0.91807 0.90881 0.91762 0.92285 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.49 36.01 0.38 -0.35 16 2 C 0.06 0.67 7.59 -79.77 -0.61 0.07 16 3 N -0.36 -4.45 12.01 34.78 0.42 -4.03 16 4 O 0.10 1.11 10.86 18.64 0.20 1.31 16 5 C 0.05 0.56 7.00 -34.63 -0.24 0.32 16 6 C -0.10 -0.86 6.15 -91.77 -0.56 -1.42 16 7 C -0.16 -1.06 10.18 -26.73 -0.27 -1.33 16 8 C -0.16 -1.02 10.23 -26.73 -0.27 -1.30 16 9 C -0.24 -3.09 6.24 -102.89 -0.64 -3.74 16 10 C 0.60 8.83 7.63 -12.53 -0.10 8.73 16 11 O -0.52 -10.02 16.75 5.27 0.09 -9.93 16 12 N -0.70 -9.13 5.31 -54.45 -0.29 -9.42 16 13 C 0.15 2.41 4.00 -67.48 -0.27 2.14 16 14 H 0.11 2.17 7.54 -51.93 -0.39 1.78 16 15 C -0.18 -3.09 7.68 -25.75 -0.20 -3.29 16 16 C 0.19 3.62 4.35 -67.49 -0.29 3.33 16 17 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 18 N -0.71 -17.11 5.12 -53.00 -0.27 -17.38 16 19 C -0.34 -9.16 9.98 -15.06 -0.15 -9.31 16 20 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 21 C -0.04 -1.19 5.50 -17.43 -0.10 -1.29 16 22 N -0.94 -28.76 13.70 55.49 0.76 -28.00 16 23 Si 1.08 25.65 29.92 -169.99 -5.09 20.56 16 24 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C -0.13 -1.90 0.91 -154.71 -0.14 -2.04 16 28 C -0.12 -1.73 7.43 -26.29 -0.20 -1.93 16 29 C -0.14 -1.62 8.08 -25.75 -0.21 -1.83 16 30 C -0.11 -1.27 7.45 -26.28 -0.20 -1.47 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.14 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.11 0.67 8.02 -51.93 -0.42 0.25 16 36 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.40 4.26 6.66 -40.82 -0.27 3.98 16 40 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.37 9.29 6.57 -40.82 -0.27 9.03 16 43 H 0.26 7.74 6.77 -40.82 -0.28 7.46 16 44 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 49 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 407.81 15.07 6.15 6.15 Total: -1.00 -33.08 407.81 -9.60 -42.69 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -7.51 Total: 12.77 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -4.07 Total: -14.71 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.62 Total: -58.83 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.29 Total: -8.62 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.09 Total: 20.56 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.08 -9.60 -42.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078683055.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.458 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds