Wall clock time and date at job start Wed Apr 1 2020 03:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30021 * 127.33458 * 2 1 4 4 O 1.20652 * 112.29735 * 180.02562 * 3 2 1 5 5 C 1.33496 * 113.16086 * 359.71578 * 4 3 2 6 6 C 1.50703 * 126.82758 * 180.31127 * 5 4 3 7 7 C 1.52996 * 117.50331 * 8.78884 * 6 5 4 8 8 C 1.52998 * 117.50019 * 300.16201 * 6 5 4 9 9 C 1.37362 * 106.33724 * 0.44935 * 5 4 3 10 10 C 1.47396 * 128.55922 * 179.85790 * 9 5 4 11 11 O 1.21618 * 120.00000 * 269.70107 * 10 9 5 12 12 N 1.34772 * 120.00329 * 89.70533 * 10 9 5 13 13 C 1.46501 * 120.00384 * 179.97438 * 12 10 9 14 14 H 1.09003 * 112.88270 * 333.15296 * 13 12 10 15 15 C 1.53943 * 113.66632 * 104.50100 * 13 12 10 16 16 C 1.53957 * 87.29592 * 89.73640 * 15 13 12 17 17 H 1.08999 * 113.65708 * 139.29842 * 16 15 13 18 18 N 1.46499 * 113.66469 * 270.26501 * 16 15 13 19 19 C 1.36939 * 119.99933 * 255.76878 * 18 16 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 16 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 16 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47144 * 90.00258 * 23 21 19 25 25 H 1.48500 * 109.47140 * 210.00775 * 23 21 19 26 26 H 1.48502 * 109.46967 * 330.00206 * 23 21 19 27 27 C 1.52909 * 86.77904 * 24.73790 * 16 15 13 28 28 C 1.52905 * 121.13976 * 209.38147 * 27 16 15 29 29 C 1.53951 * 86.78325 * 209.37453 * 28 27 16 30 30 C 1.52905 * 121.13949 * 100.81402 * 27 16 15 31 31 H 1.08994 * 109.47437 * 269.96259 * 1 2 3 32 32 H 1.09006 * 109.46929 * 29.96284 * 1 2 3 33 33 H 1.08999 * 109.46883 * 149.95848 * 1 2 3 34 34 H 1.09007 * 115.54380 * 154.50058 * 6 5 4 35 35 H 1.09001 * 117.49907 * 359.97438 * 7 6 5 36 36 H 1.09002 * 117.49838 * 145.02096 * 7 6 5 37 37 H 1.08998 * 117.49888 * 214.98048 * 8 6 5 38 38 H 1.09002 * 117.49694 * 359.97438 * 8 6 5 39 39 H 0.97005 * 119.99959 * 359.97438 * 12 10 9 40 40 H 1.09007 * 113.58319 * 335.13635 * 15 13 12 41 41 H 1.09001 * 113.65455 * 204.35077 * 15 13 12 42 42 H 0.97001 * 119.99790 * 75.48851 * 18 16 15 43 43 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 44 44 H 1.09005 * 113.66191 * 323.84405 * 28 27 16 45 45 H 1.08999 * 113.66553 * 94.89899 * 28 27 16 46 46 H 1.09001 * 113.58062 * 270.12702 * 29 28 27 47 47 H 1.09006 * 113.65276 * 139.34895 * 29 28 27 48 48 H 1.09000 * 113.66438 * 265.09198 * 30 27 16 49 49 H 1.08995 * 113.66448 * 36.15502 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7208 -0.0005 5 6 3.6494 -0.6008 0.0052 6 6 4.9712 -1.3245 0.0128 7 6 6.2342 -0.4868 0.2217 8 6 5.9227 -1.0702 -1.1580 9 6 2.3991 -1.1696 -0.0005 10 6 2.0401 -2.5992 -0.0007 11 8 1.8920 -3.1888 -1.0540 12 7 1.8758 -3.2529 1.1663 13 6 1.5184 -4.6737 1.1661 14 1 0.9751 -4.9739 0.2702 15 6 2.6915 -5.6060 1.5189 16 6 2.2672 -5.4626 2.9919 17 1 2.3226 -6.3939 3.5556 18 7 2.9074 -4.3400 3.6817 19 6 3.9283 -4.5712 4.5647 20 1 4.2584 -5.5816 4.7558 21 6 4.5388 -3.5070 5.2140 22 7 4.1362 -2.2757 4.9813 23 14 5.9309 -3.8226 6.4189 24 1 7.2269 -3.8013 5.6945 25 1 5.9301 -2.7671 7.4635 26 1 5.7420 -5.1503 7.0568 27 6 0.8669 -5.1428 2.4675 28 6 -0.0816 -4.2333 3.2494 29 6 -1.2331 -5.0386 2.6202 30 6 -0.2365 -6.2013 2.4625 31 1 -0.3634 -0.0007 1.0276 32 1 -0.3633 0.8904 -0.5133 33 1 -0.3633 -0.8896 -0.5145 34 1 4.9555 -2.3273 0.4399 35 1 6.1092 0.5880 0.3532 36 1 7.0499 -0.9382 0.7866 37 1 6.5335 -1.9053 -1.5008 38 1 5.5925 -0.3796 -1.9340 39 1 1.9942 -2.7827 2.0065 40 1 3.6700 -5.1765 1.3033 41 1 2.5787 -6.6176 1.1291 42 1 2.6109 -3.4325 3.5100 43 1 4.5626 -1.5321 5.4353 44 1 -0.0066 -4.3492 4.3307 45 1 -0.0509 -3.1915 2.9305 46 1 -1.5821 -4.6315 1.6712 47 1 -2.0468 -5.2526 3.3133 48 1 -0.3296 -6.7317 1.5147 49 1 -0.2050 -6.8702 3.3225 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078683056.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:41 Heat of formation + Delta-G solvation = 108.732531 kcal Electronic energy + Delta-G solvation = -31887.582845 eV Core-core repulsion = 27820.762540 eV Total energy + Delta-G solvation = -4066.820305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.72838 -40.68109 -38.68362 -37.33443 -35.32423 -34.45033 -33.66643 -32.38038 -31.43339 -29.82941 -28.74381 -25.64517 -25.36711 -24.31895 -23.95296 -23.46581 -22.56615 -22.34777 -20.47853 -20.12448 -19.44759 -18.51801 -17.64566 -17.24752 -17.18182 -16.40140 -15.80972 -15.72424 -15.29715 -14.87189 -14.61989 -14.34656 -13.95552 -13.79491 -13.37759 -13.31090 -13.14146 -12.99223 -12.95767 -12.52324 -12.16471 -12.04763 -11.91422 -11.61190 -11.59086 -11.45851 -11.37014 -11.08924 -10.99179 -10.92624 -10.72697 -10.44149 -10.26362 -10.16980 -10.03671 -9.83141 -9.78517 -9.68181 -9.41276 -9.03217 -8.91614 -8.61210 -7.08602 -5.89424 -3.18382 1.40270 2.02162 2.61979 2.87045 3.35915 3.41699 3.43372 3.46351 3.81091 4.15508 4.25546 4.46367 4.68049 4.71380 4.78605 4.87599 4.91774 4.94514 5.07183 5.10562 5.25925 5.32444 5.37186 5.44851 5.51044 5.56457 5.58340 5.62312 5.65355 5.81973 5.83846 5.87909 5.90540 5.96301 6.02625 6.05476 6.06031 6.07912 6.08883 6.20311 6.28498 6.36889 6.56871 6.63674 6.69186 6.88720 7.02382 7.62275 7.78467 8.28698 8.32839 8.40977 9.40089 9.94776 10.28569 11.32614 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007362 B = 0.005395 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3802.524003 B = 5188.728201 C = 7428.620832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.055 3.945 3 N -0.357 5.357 4 O 0.094 5.906 5 C 0.064 3.936 6 C -0.090 4.090 7 C -0.157 4.157 8 C -0.159 4.159 9 C -0.245 4.245 10 C 0.605 3.395 11 O -0.537 6.537 12 N -0.684 5.684 13 C 0.151 3.849 14 H 0.092 0.908 15 C -0.185 4.185 16 C 0.180 3.820 17 H 0.065 0.935 18 N -0.700 5.700 19 C -0.242 4.242 20 H 0.072 0.928 21 C -0.008 4.008 22 N -0.930 5.930 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.130 4.130 28 C -0.116 4.116 29 C -0.141 4.141 30 C -0.103 4.103 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.143 0.857 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.410 0.590 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.379 0.621 43 H 0.256 0.744 44 H 0.088 0.912 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.373 0.091 -9.485 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 N -0.065 5.065 4 O 0.033 5.967 5 C 0.000 4.000 6 C -0.109 4.109 7 C -0.194 4.194 8 C -0.196 4.196 9 C -0.252 4.252 10 C 0.389 3.611 11 O -0.414 6.414 12 N -0.336 5.336 13 C 0.045 3.955 14 H 0.110 0.890 15 C -0.227 4.227 16 C 0.067 3.933 17 H 0.083 0.917 18 N -0.339 5.339 19 C -0.373 4.373 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.578 5.578 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.133 4.133 28 C -0.154 4.154 29 C -0.179 4.179 30 C -0.141 4.141 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.160 0.840 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.249 0.751 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.214 0.786 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.518 0.958 -10.061 11.515 hybrid contribution 0.716 -0.331 1.085 1.341 sum -4.803 0.628 -8.976 10.200 Atomic orbital electron populations 1.20209 0.85313 1.03983 1.03866 1.24655 0.98415 0.86593 1.01084 1.73576 0.89072 1.23297 1.20531 1.84469 1.21482 1.22503 1.68210 1.23502 0.95613 0.83202 0.97640 1.20529 0.83972 0.99975 1.06385 1.23065 0.97255 1.00158 0.98909 1.23103 1.00995 1.03826 0.91720 1.21743 0.92497 0.95290 1.15648 1.16785 0.76568 0.83735 0.83996 1.90777 1.51146 1.68130 1.31383 1.45723 1.68669 1.10627 1.08545 1.21471 0.96879 0.80116 0.96997 0.89019 1.24296 0.98494 0.98269 1.01677 1.21048 0.89055 0.92509 0.90651 0.91729 1.42089 1.39888 1.03200 1.48750 1.19243 1.08892 0.93053 1.16144 0.90957 1.24712 0.99986 0.95244 1.00508 1.69627 1.44198 0.97629 1.46322 0.86203 0.82209 0.77071 0.80757 1.21714 1.21795 1.20756 1.23396 0.95479 0.98186 0.96201 1.22518 0.94661 0.97973 1.00240 1.22863 0.96706 0.97608 1.00694 1.22482 0.94196 0.95581 1.01880 0.89522 0.90085 0.89868 0.83972 0.87751 0.87220 0.87413 0.88282 0.75135 0.90982 0.90378 0.78572 0.93374 0.89387 0.92060 0.90760 0.91886 0.91587 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.49 36.00 0.38 -0.53 16 2 C 0.05 0.86 7.59 -79.77 -0.61 0.26 16 3 N -0.36 -5.91 12.01 34.78 0.42 -5.49 16 4 O 0.09 1.53 10.86 18.65 0.20 1.73 16 5 C 0.06 1.04 7.00 -34.63 -0.24 0.79 16 6 C -0.09 -1.31 6.15 -91.77 -0.56 -1.87 16 7 C -0.16 -1.92 10.18 -26.73 -0.27 -2.19 16 8 C -0.16 -1.82 10.23 -26.73 -0.27 -2.10 16 9 C -0.24 -4.15 6.24 -102.90 -0.64 -4.79 16 10 C 0.60 10.74 7.63 -12.53 -0.10 10.65 16 11 O -0.54 -10.71 16.75 5.26 0.09 -10.62 16 12 N -0.68 -11.68 4.71 -54.45 -0.26 -11.94 16 13 C 0.15 2.43 4.08 -67.48 -0.28 2.15 16 14 H 0.09 1.48 7.54 -51.93 -0.39 1.09 16 15 C -0.19 -3.14 7.68 -25.75 -0.20 -3.34 16 16 C 0.18 3.30 4.35 -67.48 -0.29 3.00 16 17 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 18 N -0.70 -15.76 4.97 -52.99 -0.26 -16.02 16 19 C -0.24 -6.22 9.98 -15.06 -0.15 -6.37 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 22 N -0.93 -25.91 13.06 55.49 0.72 -25.18 16 23 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 C -0.13 -1.98 0.76 -154.71 -0.12 -2.10 16 28 C -0.12 -1.74 7.18 -26.28 -0.19 -1.92 16 29 C -0.14 -1.72 8.08 -25.75 -0.21 -1.93 16 30 C -0.10 -1.29 7.84 -26.28 -0.21 -1.49 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.14 2.26 8.14 -51.92 -0.42 1.84 16 35 H 0.10 1.22 8.02 -51.93 -0.42 0.81 16 36 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.41 7.55 5.90 -40.82 -0.24 7.31 16 40 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.38 8.89 5.39 -40.82 -0.22 8.67 16 43 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.06 0.94 7.50 -51.93 -0.39 0.55 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 406.81 15.07 6.13 6.13 Total: -1.00 -29.61 406.81 -9.58 -39.18 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -7.54 Total: 18.02 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -4.05 Total: -12.09 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.62 Total: -58.63 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.29 Total: -8.89 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -29.61 -9.58 -39.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078683056.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.915 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds