Wall clock time and date at job start Wed Apr 1 2020 03:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30016 * 127.33855 * 2 1 4 4 O 1.20653 * 112.30291 * 180.30472 * 3 2 1 5 5 C 1.33492 * 113.15876 * 359.71220 * 4 3 2 6 6 C 1.50700 * 126.83116 * 179.97438 * 5 4 3 7 7 C 1.53010 * 117.49737 * 8.65184 * 6 5 4 8 8 C 1.52997 * 117.49867 * 300.02773 * 6 5 4 9 9 C 1.37356 * 106.34074 * 0.02562 * 5 4 3 10 10 C 1.47398 * 128.56622 * 179.97438 * 9 5 4 11 11 O 1.21605 * 120.00301 * 89.99839 * 10 9 5 12 12 N 1.34782 * 119.99741 * 270.00202 * 10 9 5 13 13 C 1.46500 * 120.00299 * 180.02562 * 12 10 9 14 14 H 1.09006 * 112.94479 * 26.89402 * 13 12 10 15 15 C 1.53950 * 113.66037 * 255.49462 * 13 12 10 16 16 C 1.53952 * 87.37851 * 220.83072 * 15 13 12 17 17 H 1.09002 * 113.65815 * 270.21969 * 16 15 13 18 18 N 1.46501 * 113.66271 * 139.16614 * 16 15 13 19 19 C 1.36932 * 119.99926 * 104.50250 * 18 16 15 20 20 H 1.08001 * 120.00097 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99812 * 179.97438 * 19 18 16 22 22 N 1.31626 * 119.99925 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99984 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47375 * 90.00480 * 23 21 19 25 25 H 1.48503 * 109.47179 * 210.00221 * 23 21 19 26 26 H 1.48499 * 109.47515 * 329.99928 * 23 21 19 27 27 C 1.52909 * 86.78252 * 24.68886 * 16 15 13 28 28 C 1.52907 * 121.13536 * 209.38099 * 27 16 15 29 29 C 1.53958 * 86.78205 * 209.38733 * 28 27 16 30 30 C 1.52915 * 121.13447 * 100.82251 * 27 16 15 31 31 H 1.09003 * 109.46961 * 270.14676 * 1 2 3 32 32 H 1.08998 * 109.46899 * 30.14127 * 1 2 3 33 33 H 1.08994 * 109.47208 * 150.14985 * 1 2 3 34 34 H 1.09001 * 115.55298 * 154.35364 * 6 5 4 35 35 H 1.08993 * 117.49463 * 359.97438 * 7 6 5 36 36 H 1.08999 * 117.49852 * 145.02027 * 7 6 5 37 37 H 1.09003 * 117.49637 * 214.97856 * 8 6 5 38 38 H 1.08992 * 117.50072 * 359.97438 * 8 6 5 39 39 H 0.96999 * 119.99672 * 359.97438 * 12 10 9 40 40 H 1.09002 * 113.58302 * 106.18673 * 15 13 12 41 41 H 1.09004 * 113.57731 * 335.46846 * 15 13 12 42 42 H 0.97001 * 119.99346 * 284.50168 * 18 16 15 43 43 H 0.96996 * 119.99717 * 179.97438 * 22 21 19 44 44 H 1.08994 * 113.66316 * 323.85618 * 28 27 16 45 45 H 1.08997 * 113.66044 * 94.91866 * 28 27 16 46 46 H 1.09000 * 113.57861 * 270.13288 * 29 28 27 47 47 H 1.08990 * 113.65166 * 139.34938 * 29 28 27 48 48 H 1.09004 * 113.66330 * 265.09006 * 30 27 16 49 49 H 1.09001 * 113.65876 * 36.13855 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7207 -0.0059 5 6 3.6494 -0.6008 -0.0048 6 6 4.9711 -1.3247 -0.0115 7 6 6.2365 -0.4868 0.1837 8 6 5.9099 -1.0703 -1.1925 9 6 2.3992 -1.1696 0.0024 10 6 2.0401 -2.5992 0.0060 11 8 1.8975 -3.1877 1.0605 12 7 1.8698 -3.2541 -1.1597 13 6 1.5123 -4.6748 -1.1563 14 1 0.9727 -4.9751 -0.2580 15 6 2.6836 -5.6075 -1.5143 16 6 1.6830 -6.4276 -2.3487 17 1 1.1915 -7.2214 -1.7862 18 7 2.2235 -6.8864 -3.6308 19 6 2.5890 -8.1963 -3.7903 20 1 2.4784 -8.8914 -2.9712 21 6 3.1006 -8.6311 -5.0053 22 7 3.2349 -7.7840 -6.0038 23 14 3.5985 -10.4182 -5.2232 24 1 2.4358 -11.1995 -5.7162 25 1 4.7073 -10.5068 -6.2071 26 1 4.0484 -10.9693 -3.9197 27 6 0.8541 -5.1471 -2.4550 28 6 -0.6674 -5.1997 -2.5977 29 6 -0.5536 -3.8749 -3.3736 30 6 0.8901 -4.2843 -3.7170 31 1 -0.3633 0.0026 1.0277 32 1 -0.3633 0.8887 -0.5160 33 1 -0.3633 -0.8913 -0.5115 34 1 4.9602 -2.3273 0.4159 35 1 6.1128 0.5879 0.3165 36 1 7.0582 -0.9382 0.7397 37 1 6.5169 -1.9056 -1.5419 38 1 5.5714 -0.3798 -1.9649 39 1 1.9832 -2.7845 -2.0008 40 1 3.0861 -6.1502 -0.6589 41 1 3.4577 -5.1257 -2.1117 42 1 2.3224 -6.2621 -4.3666 43 1 3.5927 -8.0878 -6.8526 44 1 -1.0213 -6.0330 -3.2046 45 1 -1.1990 -5.1077 -1.6506 46 1 -0.6168 -2.9910 -2.7388 47 1 -1.2094 -3.8192 -4.2424 48 1 1.6027 -3.4612 -3.6640 49 1 0.9741 -4.8605 -4.6385 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078683057.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:44 Heat of formation + Delta-G solvation = 105.343726 kcal Electronic energy + Delta-G solvation = -30932.276916 eV Core-core repulsion = 26865.309662 eV Total energy + Delta-G solvation = -4066.967255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.08829 -40.70265 -38.91499 -37.69363 -34.97854 -34.76981 -34.14175 -32.61053 -31.79155 -29.85141 -29.03468 -25.72317 -25.54834 -24.42429 -24.01353 -23.74256 -22.76072 -22.18460 -20.62631 -20.44082 -19.76687 -18.54124 -17.94353 -17.56867 -17.15538 -16.65253 -16.23655 -16.11710 -15.23727 -15.06008 -14.67390 -14.51813 -14.22541 -13.84560 -13.63913 -13.58141 -13.25319 -13.09062 -12.92883 -12.49448 -12.39029 -12.16058 -11.93422 -11.89399 -11.69816 -11.58198 -11.45413 -11.35787 -11.07544 -10.85122 -10.80492 -10.77774 -10.36808 -10.21499 -10.12893 -10.08897 -9.95840 -9.70076 -9.51039 -9.38661 -8.86736 -8.80613 -7.00325 -5.83506 -3.11763 1.02926 1.68734 2.34058 2.54426 3.18995 3.39923 3.45081 3.46231 3.47082 3.82781 3.94861 4.34827 4.47044 4.53271 4.54837 4.64712 4.73325 4.84162 4.94688 4.98537 5.09198 5.14227 5.19111 5.20648 5.28849 5.31412 5.35838 5.39965 5.53777 5.58593 5.65260 5.73829 5.75507 5.77684 5.83914 5.94771 5.96323 6.08039 6.10660 6.19260 6.26541 6.33769 6.47703 6.55325 6.70175 6.85726 7.01394 7.50659 7.66470 7.98925 8.12780 8.35469 9.47221 10.03926 10.38871 11.38860 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.002991 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.234432 B = 9359.690549 C =10584.180440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.055 3.945 3 N -0.356 5.356 4 O 0.095 5.905 5 C 0.053 3.947 6 C -0.097 4.097 7 C -0.162 4.162 8 C -0.154 4.154 9 C -0.244 4.244 10 C 0.599 3.401 11 O -0.529 6.529 12 N -0.697 5.697 13 C 0.143 3.857 14 H 0.112 0.888 15 C -0.173 4.173 16 C 0.182 3.818 17 H 0.079 0.921 18 N -0.706 5.706 19 C -0.243 4.243 20 H 0.072 0.928 21 C -0.011 4.011 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 C -0.122 4.122 28 C -0.121 4.121 29 C -0.140 4.140 30 C -0.109 4.109 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.401 0.599 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.087 0.913 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.056 0.944 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.677 16.894 10.013 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 N -0.063 5.063 4 O 0.034 5.966 5 C -0.011 4.011 6 C -0.116 4.116 7 C -0.199 4.199 8 C -0.191 4.191 9 C -0.251 4.251 10 C 0.383 3.617 11 O -0.406 6.406 12 N -0.348 5.348 13 C 0.039 3.961 14 H 0.130 0.870 15 C -0.216 4.216 16 C 0.069 3.931 17 H 0.097 0.903 18 N -0.345 5.345 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.124 4.124 28 C -0.159 4.159 29 C -0.178 4.178 30 C -0.146 4.146 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.159 0.841 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.121 0.879 39 H 0.238 0.762 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.221 0.779 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.923 17.565 10.738 20.676 hybrid contribution 0.325 -1.278 -0.753 1.519 sum -1.597 16.286 9.985 19.170 Atomic orbital electron populations 1.20227 0.85082 1.04179 1.03980 1.24735 0.98562 0.86483 1.00898 1.73615 0.89036 1.23246 1.20407 1.84493 1.21544 1.22416 1.68157 1.23546 0.95585 0.83378 0.98557 1.20563 0.84028 0.99661 1.07306 1.23096 0.96745 1.00155 0.99862 1.23158 1.00542 1.03974 0.91471 1.21898 0.92451 0.95558 1.15219 1.16856 0.76921 0.83591 0.84366 1.90817 1.50572 1.67990 1.31188 1.46017 1.69235 1.11663 1.07840 1.22284 0.97915 0.78180 0.97756 0.87025 1.24300 0.97986 0.98371 1.00923 1.21132 0.91654 0.91550 0.88775 0.90263 1.42307 1.73973 1.08849 1.09331 1.19301 1.34711 0.86389 0.96990 0.91049 1.24736 1.02000 0.97846 0.96151 1.69651 1.51567 1.33629 1.03225 0.86202 0.77856 0.84794 0.77414 1.21715 1.21802 1.20708 1.23468 0.95654 0.98895 0.94427 1.22682 0.95386 0.97783 1.00036 1.22840 0.97490 0.97502 0.99956 1.22461 0.95775 0.98264 0.98139 0.89573 0.89874 0.89724 0.84140 0.87682 0.87301 0.86916 0.87930 0.76249 0.92045 0.90092 0.77865 0.93472 0.89465 0.92020 0.91102 0.91785 0.92539 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.49 36.00 0.38 -0.31 16 2 C 0.06 0.66 7.59 -79.77 -0.61 0.05 16 3 N -0.36 -4.48 12.01 34.78 0.42 -4.07 16 4 O 0.10 1.13 10.86 18.65 0.20 1.33 16 5 C 0.05 0.60 7.00 -34.63 -0.24 0.36 16 6 C -0.10 -0.91 6.15 -91.77 -0.56 -1.47 16 7 C -0.16 -1.16 10.18 -26.72 -0.27 -1.43 16 8 C -0.15 -1.19 10.23 -26.73 -0.27 -1.47 16 9 C -0.24 -3.09 6.24 -102.89 -0.64 -3.73 16 10 C 0.60 8.43 7.63 -12.53 -0.10 8.33 16 11 O -0.53 -9.25 16.75 5.27 0.09 -9.16 16 12 N -0.70 -8.94 5.31 -54.37 -0.29 -9.22 16 13 C 0.14 2.06 4.09 -67.40 -0.28 1.78 16 14 H 0.11 1.68 7.55 -51.93 -0.39 1.29 16 15 C -0.17 -2.90 7.68 -25.75 -0.20 -3.10 16 16 C 0.18 3.37 4.35 -67.48 -0.29 3.08 16 17 H 0.08 1.49 8.12 -51.93 -0.42 1.07 16 18 N -0.71 -16.48 5.34 -52.99 -0.28 -16.76 16 19 C -0.24 -6.44 9.98 -15.06 -0.15 -6.59 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 22 N -0.93 -27.00 13.06 55.49 0.72 -26.28 16 23 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C -0.12 -1.81 1.07 -154.63 -0.16 -1.98 16 28 C -0.12 -1.65 7.84 -26.28 -0.21 -1.85 16 29 C -0.14 -1.71 8.08 -25.75 -0.21 -1.92 16 30 C -0.11 -1.55 6.77 -26.28 -0.18 -1.73 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.14 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.10 0.72 8.02 -51.93 -0.42 0.30 16 36 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.40 4.66 6.65 -40.82 -0.27 4.39 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.39 9.47 6.12 -40.82 -0.25 9.22 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.73 6.42 -51.93 -0.33 0.40 16 49 H 0.10 1.68 6.96 -51.93 -0.36 1.32 16 LS Contribution 406.89 15.07 6.13 6.13 Total: -1.00 -31.04 406.89 -9.61 -40.64 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -7.49 Total: 13.03 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -4.09 Total: -12.39 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.57 Total: -56.33 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.29 Total: -7.83 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.04 -9.61 -40.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078683057.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.987 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds