Wall clock time and date at job start Wed Apr 1 2020 03:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41373 * 126.80402 * 2 1 4 4 C 1.35445 * 103.98615 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.77818 * 179.97438 * 4 3 2 6 6 C 1.50703 * 115.55172 * 330.07054 * 5 4 3 7 7 O 1.21275 * 120.00428 * 124.22587 * 6 5 4 8 8 N 1.34774 * 119.99547 * 304.23069 * 6 5 4 9 9 C 1.46503 * 120.00429 * 174.73072 * 8 6 5 10 10 H 1.09006 * 112.94028 * 333.09547 * 9 8 6 11 11 C 1.53950 * 113.66572 * 104.49902 * 9 8 6 12 12 C 1.53951 * 87.29371 * 139.21321 * 11 9 8 13 13 H 1.08997 * 113.66031 * 89.73945 * 12 11 9 14 14 N 1.46497 * 113.65752 * 220.70412 * 12 11 9 15 15 C 1.36942 * 119.99694 * 255.48920 * 14 12 11 16 16 H 1.08001 * 119.99943 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00000 * 180.02562 * 15 14 12 18 18 N 1.31617 * 119.99804 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99883 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47290 * 59.99810 * 19 17 15 21 21 H 1.48502 * 109.46880 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46851 * 299.99705 * 19 17 15 23 23 C 1.52899 * 113.66466 * 201.69136 * 9 8 6 24 24 C 1.52911 * 121.14224 * 94.90690 * 23 9 8 25 25 C 1.53960 * 86.78235 * 209.37194 * 24 23 9 26 26 C 1.52902 * 121.14168 * 346.33589 * 23 9 8 27 27 C 1.53001 * 117.49818 * 115.73277 * 5 4 3 28 28 C 1.52998 * 117.50129 * 184.39372 * 5 4 3 29 29 O 1.34041 * 106.44934 * 0.23800 * 4 3 2 30 30 N 1.20922 * 111.56478 * 359.56962 * 29 4 3 31 31 H 1.08991 * 109.47419 * 90.00026 * 1 2 3 32 32 H 1.09003 * 109.47149 * 209.99982 * 1 2 3 33 33 H 1.09002 * 109.46867 * 329.99759 * 1 2 3 34 34 H 1.08000 * 128.00656 * 0.03718 * 3 2 1 35 35 H 0.97006 * 120.00012 * 354.72415 * 8 6 5 36 36 H 1.09002 * 113.57930 * 253.81931 * 11 9 8 37 37 H 1.09003 * 113.57567 * 24.60437 * 11 9 8 38 38 H 0.97000 * 120.00508 * 75.50138 * 14 12 11 39 39 H 0.97001 * 119.99765 * 179.97438 * 18 17 15 40 40 H 1.08996 * 113.65768 * 323.84084 * 24 23 9 41 41 H 1.08994 * 113.66479 * 94.90669 * 24 23 9 42 42 H 1.08998 * 113.58078 * 270.12904 * 25 24 23 43 43 H 1.09004 * 113.64879 * 139.34433 * 25 24 23 44 44 H 1.08996 * 113.66838 * 265.10124 * 26 23 9 45 45 H 1.09006 * 113.66087 * 36.15993 * 26 23 9 46 46 H 1.09000 * 117.49989 * 215.00430 * 27 5 4 47 47 H 1.08999 * 117.50034 * 0.03245 * 27 5 4 48 48 H 1.08997 * 117.49891 * 359.97438 * 28 5 4 49 49 H 1.09000 * 117.50052 * 144.97495 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6024 0.6067 -0.0006 5 6 4.9022 1.3694 -0.0014 6 6 4.8661 2.7145 -0.6799 7 8 5.2042 3.7089 -0.0736 8 7 4.4580 2.8124 -1.9607 9 6 4.3124 4.1300 -2.5845 10 1 4.0997 4.9200 -1.8642 11 6 5.4462 4.4776 -3.5661 12 6 4.3670 5.0757 -4.4868 13 1 4.1698 6.1315 -4.3012 14 7 4.5726 4.7753 -5.9059 15 6 5.0484 5.7440 -6.7488 16 1 5.2725 6.7293 -6.3674 17 6 5.2427 5.4596 -8.0936 18 7 4.9692 4.2590 -8.5584 19 14 5.8925 6.7807 -9.2433 20 1 7.2278 7.2312 -8.7753 21 1 6.0092 6.2280 -10.6166 22 1 4.9562 7.9333 -9.2520 23 6 3.3788 4.1358 -3.7953 24 6 1.9021 4.5067 -3.6535 25 6 1.6420 3.5719 -4.8489 26 6 2.9335 2.8312 -4.4569 27 6 5.8103 1.2189 1.2207 28 6 6.1963 0.5599 -0.1059 29 8 3.4537 -0.7254 -0.0062 30 7 2.2868 -1.0424 -0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 2.0710 2.1742 0.0006 35 1 4.2608 2.0104 -2.4695 36 1 6.1472 5.2168 -3.1784 37 1 5.9424 3.6029 -3.9866 38 1 4.3715 3.8904 -6.2484 39 1 5.1046 4.0604 -9.4982 40 1 1.4520 4.1620 -2.7226 41 1 1.6921 5.5552 -3.8645 42 1 1.7026 4.0725 -5.8152 43 1 0.7423 2.9659 -4.7423 44 1 3.5474 2.5412 -5.3095 45 1 2.7731 2.0157 -3.7517 46 1 6.3817 2.0927 1.5339 47 1 5.4680 0.5678 2.0251 48 1 6.1076 -0.5243 -0.1737 49 1 7.0214 1.0000 -0.6659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078709049.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:56 Heat of formation + Delta-G solvation = 109.940601 kcal Electronic energy + Delta-G solvation = -31097.931267 eV Core-core repulsion = 27031.163348 eV Total energy + Delta-G solvation = -4066.767919 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.19929 -40.79452 -39.62295 -36.88377 -35.05248 -34.91755 -34.18301 -32.52513 -31.70087 -29.91515 -28.96253 -25.82939 -25.54705 -24.22218 -24.15982 -23.54208 -22.85723 -22.12212 -20.98124 -20.50353 -19.61420 -18.37717 -17.86417 -17.81006 -17.03678 -16.73442 -16.24052 -15.57835 -15.17836 -15.03862 -14.67641 -14.42962 -14.25642 -13.94476 -13.65392 -13.56715 -13.29045 -13.06789 -12.86468 -12.69617 -12.53444 -12.14102 -11.96464 -11.89522 -11.68162 -11.56737 -11.42750 -11.28033 -11.11023 -10.93249 -10.82792 -10.74639 -10.26402 -10.25260 -10.09447 -10.08235 -9.91683 -9.73921 -9.51903 -9.40205 -8.88525 -8.74537 -7.00944 -5.83009 -3.11595 1.10872 1.94534 2.13477 2.79496 3.07528 3.40977 3.43264 3.46085 3.46556 3.90341 3.93254 4.35889 4.41070 4.51918 4.56637 4.73358 4.77880 4.87787 4.94805 5.00403 5.16525 5.18108 5.19803 5.21495 5.25835 5.28593 5.40831 5.45199 5.48651 5.55725 5.64224 5.74223 5.80893 5.83743 5.86236 5.93006 5.94546 6.01040 6.16252 6.28133 6.34223 6.47643 6.51469 6.56152 6.80482 6.87073 7.01298 7.50661 7.66067 7.98976 8.11787 8.35795 9.47513 10.03690 10.38612 11.39163 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014705 B = 0.002888 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.597207 B = 9691.802692 C =10576.326239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.021 3.979 3 C -0.215 4.215 4 C 0.011 3.989 5 C -0.098 4.098 6 C 0.559 3.441 7 O -0.529 6.529 8 N -0.700 5.700 9 C 0.131 3.869 10 H 0.109 0.891 11 C -0.173 4.173 12 C 0.193 3.807 13 H 0.080 0.920 14 N -0.706 5.706 15 C -0.245 4.245 16 H 0.071 0.929 17 C -0.010 4.010 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.117 4.117 27 C -0.125 4.125 28 C -0.143 4.143 29 O 0.102 5.898 30 N -0.364 5.364 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.170 0.830 35 H 0.401 0.599 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.387 0.613 39 H 0.256 0.744 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.056 0.944 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.119 0.881 47 H 0.108 0.892 48 H 0.114 0.886 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.694 -8.796 19.141 21.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.137 4.137 3 C -0.236 4.236 4 C -0.053 4.053 5 C -0.102 4.102 6 C 0.343 3.657 7 O -0.405 6.405 8 N -0.349 5.349 9 C 0.026 3.974 10 H 0.127 0.873 11 C -0.216 4.216 12 C 0.080 3.920 13 H 0.098 0.902 14 N -0.345 5.345 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.206 4.206 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.119 4.119 24 C -0.163 4.163 25 C -0.167 4.167 26 C -0.155 4.155 27 C -0.162 4.162 28 C -0.180 4.180 29 O 0.036 5.964 30 N -0.069 5.069 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.188 0.812 35 H 0.236 0.764 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.222 0.778 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.137 0.863 47 H 0.126 0.874 48 H 0.133 0.867 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.648 -9.235 19.413 22.227 hybrid contribution 0.075 0.777 -1.069 1.323 sum -5.573 -8.458 18.344 20.955 Atomic orbital electron populations 1.20188 0.85753 1.03782 1.03677 1.23582 0.99122 0.88563 1.02464 1.22344 0.90791 1.01265 1.09230 1.22869 0.95515 0.83672 1.03257 1.19525 0.87759 0.95144 1.07820 1.18845 0.77351 0.87610 0.81932 1.90721 1.47668 1.36896 1.65227 1.45934 1.66950 1.10192 1.11819 1.22359 0.98309 0.84035 0.92687 0.87296 1.24280 0.98002 1.01714 0.97555 1.21053 0.90583 0.95468 0.84941 0.90176 1.42330 1.76722 1.13476 1.01950 1.19248 1.35744 0.92949 0.89625 0.91106 1.24734 1.02091 0.96754 0.97046 1.69640 1.54450 1.19610 1.14292 0.86275 0.78825 0.80932 0.80194 1.21230 1.21722 1.21239 1.23556 0.93869 0.98842 0.95593 1.22705 0.95519 1.00054 0.98017 1.22730 0.96516 0.98109 0.99352 1.22426 0.97975 0.94952 1.00104 1.23183 0.98791 1.03495 0.90737 1.23238 0.94292 1.00011 1.00500 1.84803 1.21803 1.22027 1.67770 1.73866 0.89094 1.23799 1.20099 0.89876 0.90537 0.89920 0.81221 0.76358 0.92023 0.90111 0.77756 0.93399 0.91050 0.91392 0.89089 0.92517 0.90234 0.91312 0.86260 0.87411 0.86742 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.47 36.01 0.38 -0.18 16 2 C 0.02 0.22 7.33 -82.10 -0.60 -0.38 16 3 C -0.21 -2.24 10.59 -39.39 -0.42 -2.66 16 4 C 0.01 0.11 6.74 -35.30 -0.24 -0.13 16 5 C -0.10 -1.00 2.44 -156.81 -0.38 -1.38 16 6 C 0.56 7.20 6.77 -10.98 -0.07 7.12 16 7 O -0.53 -8.48 16.17 5.56 0.09 -8.39 16 8 N -0.70 -8.79 5.25 -53.37 -0.28 -9.07 16 9 C 0.13 1.88 4.04 -67.49 -0.27 1.60 16 10 H 0.11 1.63 7.62 -51.93 -0.40 1.23 16 11 C -0.17 -2.94 7.68 -25.75 -0.20 -3.14 16 12 C 0.19 3.59 4.35 -67.48 -0.29 3.30 16 13 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 14 N -0.71 -16.53 5.35 -52.99 -0.28 -16.81 16 15 C -0.24 -6.51 9.98 -15.06 -0.15 -6.66 16 16 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -27.12 13.06 55.49 0.72 -26.40 16 19 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 C -0.12 -1.74 1.06 -154.72 -0.16 -1.91 16 24 C -0.13 -1.72 7.84 -26.28 -0.21 -1.92 16 25 C -0.13 -1.90 8.08 -25.74 -0.21 -2.11 16 26 C -0.12 -1.71 6.77 -26.28 -0.18 -1.89 16 27 C -0.12 -1.06 9.75 -26.69 -0.26 -1.32 16 28 C -0.14 -1.17 9.89 -26.69 -0.26 -1.43 16 29 O 0.10 1.17 10.97 17.17 0.19 1.36 16 30 N -0.36 -4.41 12.07 33.42 0.40 -4.01 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.40 4.69 6.93 -40.82 -0.28 4.41 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 38 H 0.39 9.55 5.87 -40.82 -0.24 9.31 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.37 6.43 -51.93 -0.33 1.04 16 45 H 0.07 0.87 6.96 -51.93 -0.36 0.51 16 46 H 0.12 1.07 7.83 -51.93 -0.41 0.66 16 47 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.11 0.80 8.00 -51.93 -0.42 0.38 16 49 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 404.55 15.07 6.10 6.10 Total: -1.00 -30.73 404.55 -9.19 -39.92 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -7.48 Total: 13.92 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -3.63 Total: -13.46 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.56 Total: -56.29 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: 0.28 Total: -7.04 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.73 -9.19 -39.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078709049.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.863 kcal (2) G-P(sol) polarization free energy of solvation -30.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds