Wall clock time and date at job start Wed Apr 1 2020 03:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41373 * 126.80402 * 2 1 4 4 C 1.35445 * 103.98615 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.77818 * 179.97438 * 4 3 2 6 6 C 1.50703 * 115.55172 * 330.07054 * 5 4 3 7 7 O 1.21275 * 120.00428 * 124.22587 * 6 5 4 8 8 N 1.34774 * 119.99547 * 304.23069 * 6 5 4 9 9 C 1.46503 * 120.00429 * 174.73072 * 8 6 5 10 10 H 1.09006 * 112.94028 * 333.09547 * 9 8 6 11 11 C 1.53950 * 113.66572 * 104.49902 * 9 8 6 12 12 C 1.53951 * 87.29371 * 139.21321 * 11 9 8 13 13 H 1.08997 * 113.66031 * 89.73945 * 12 11 9 14 14 N 1.46497 * 113.65752 * 220.70412 * 12 11 9 15 15 C 1.36942 * 119.99694 * 255.48920 * 14 12 11 16 16 H 1.08001 * 119.99943 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00000 * 180.02562 * 15 14 12 18 18 N 1.31617 * 119.99804 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99883 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47290 * 59.99810 * 19 17 15 21 21 H 1.48502 * 109.46880 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46851 * 299.99705 * 19 17 15 23 23 C 1.52899 * 113.66466 * 201.69136 * 9 8 6 24 24 C 1.52911 * 121.14224 * 94.90690 * 23 9 8 25 25 C 1.53960 * 86.78235 * 209.37194 * 24 23 9 26 26 C 1.52902 * 121.14168 * 346.33589 * 23 9 8 27 27 C 1.53001 * 117.49818 * 115.73277 * 5 4 3 28 28 C 1.52998 * 117.50129 * 184.39372 * 5 4 3 29 29 O 1.34041 * 106.44934 * 0.23800 * 4 3 2 30 30 N 1.20922 * 111.56478 * 359.56962 * 29 4 3 31 31 H 1.08991 * 109.47419 * 90.00026 * 1 2 3 32 32 H 1.09003 * 109.47149 * 209.99982 * 1 2 3 33 33 H 1.09002 * 109.46867 * 329.99759 * 1 2 3 34 34 H 1.08000 * 128.00656 * 0.03718 * 3 2 1 35 35 H 0.97006 * 120.00012 * 354.72415 * 8 6 5 36 36 H 1.09002 * 113.57930 * 253.81931 * 11 9 8 37 37 H 1.09003 * 113.57567 * 24.60437 * 11 9 8 38 38 H 0.97000 * 120.00508 * 75.50138 * 14 12 11 39 39 H 0.97001 * 119.99765 * 179.97438 * 18 17 15 40 40 H 1.08996 * 113.65768 * 323.84084 * 24 23 9 41 41 H 1.08994 * 113.66479 * 94.90669 * 24 23 9 42 42 H 1.08998 * 113.58078 * 270.12904 * 25 24 23 43 43 H 1.09004 * 113.64879 * 139.34433 * 25 24 23 44 44 H 1.08996 * 113.66838 * 265.10124 * 26 23 9 45 45 H 1.09006 * 113.66087 * 36.15993 * 26 23 9 46 46 H 1.09000 * 117.49989 * 215.00430 * 27 5 4 47 47 H 1.08999 * 117.50034 * 0.03245 * 27 5 4 48 48 H 1.08997 * 117.49891 * 359.97438 * 28 5 4 49 49 H 1.09000 * 117.50052 * 144.97495 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6024 0.6067 -0.0006 5 6 4.9022 1.3694 -0.0014 6 6 4.8661 2.7145 -0.6799 7 8 5.2042 3.7089 -0.0736 8 7 4.4580 2.8124 -1.9607 9 6 4.3124 4.1300 -2.5845 10 1 4.0997 4.9200 -1.8642 11 6 5.4462 4.4776 -3.5661 12 6 4.3670 5.0757 -4.4868 13 1 4.1698 6.1315 -4.3012 14 7 4.5726 4.7753 -5.9059 15 6 5.0484 5.7440 -6.7488 16 1 5.2725 6.7293 -6.3674 17 6 5.2427 5.4596 -8.0936 18 7 4.9692 4.2590 -8.5584 19 14 5.8925 6.7807 -9.2433 20 1 7.2278 7.2312 -8.7753 21 1 6.0092 6.2280 -10.6166 22 1 4.9562 7.9333 -9.2520 23 6 3.3788 4.1358 -3.7953 24 6 1.9021 4.5067 -3.6535 25 6 1.6420 3.5719 -4.8489 26 6 2.9335 2.8312 -4.4569 27 6 5.8103 1.2189 1.2207 28 6 6.1963 0.5599 -0.1059 29 8 3.4537 -0.7254 -0.0062 30 7 2.2868 -1.0424 -0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 2.0710 2.1742 0.0006 35 1 4.2608 2.0104 -2.4695 36 1 6.1472 5.2168 -3.1784 37 1 5.9424 3.6029 -3.9866 38 1 4.3715 3.8904 -6.2484 39 1 5.1046 4.0604 -9.4982 40 1 1.4520 4.1620 -2.7226 41 1 1.6921 5.5552 -3.8645 42 1 1.7026 4.0725 -5.8152 43 1 0.7423 2.9659 -4.7423 44 1 3.5474 2.5412 -5.3095 45 1 2.7731 2.0157 -3.7517 46 1 6.3817 2.0927 1.5339 47 1 5.4680 0.5678 2.0251 48 1 6.1076 -0.5243 -0.1737 49 1 7.0214 1.0000 -0.6659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078709049.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:55 Heat of formation + Delta-G solvation = 92.423836 kcal Electronic energy + Delta-G solvation = -31098.690851 eV Core-core repulsion = 27031.163348 eV Total energy + Delta-G solvation = -4067.527503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.99697 -42.00716 -40.69885 -37.76236 -36.27601 -35.82300 -35.72819 -34.03884 -32.52339 -31.73168 -29.60395 -27.04781 -26.78423 -25.79438 -25.42087 -24.36375 -23.73401 -23.25080 -22.03535 -21.79551 -20.52083 -19.63876 -19.21505 -18.64548 -18.46138 -17.67678 -17.50777 -16.51897 -16.49551 -16.34498 -16.07026 -15.67052 -15.48140 -14.87363 -14.80748 -14.42861 -14.25976 -14.19577 -13.93981 -13.80445 -13.51364 -13.40623 -13.18206 -13.12310 -12.88638 -12.71138 -12.60755 -12.46577 -12.35769 -12.28657 -12.12923 -12.05465 -11.87151 -11.85216 -11.34027 -11.25438 -11.01055 -10.99160 -10.90170 -10.70374 -10.24797 -9.93425 -8.94831 -7.93523 -5.20430 0.32149 1.18029 1.20161 1.47972 1.49623 1.55565 1.84773 2.17452 2.57190 2.66094 3.17750 3.22625 3.36970 3.45601 3.51314 3.61933 3.67354 3.76241 3.80076 3.91589 3.99956 4.02267 4.12426 4.23330 4.28502 4.48365 4.54120 4.58888 4.64162 4.66413 4.69384 4.73743 4.76081 4.82848 4.84757 4.87208 4.90894 5.01445 5.09864 5.10643 5.13011 5.19974 5.22519 5.30646 5.49876 5.51720 5.61403 5.67374 6.28736 6.44947 7.08052 7.20942 7.36345 8.12680 8.36732 9.29212 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014705 B = 0.002888 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.597207 B = 9691.802692 C =10576.326239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.021 3.979 3 C -0.221 4.221 4 C 0.012 3.988 5 C -0.109 4.109 6 C 0.564 3.436 7 O -0.561 6.561 8 N -0.693 5.693 9 C 0.152 3.848 10 H 0.112 0.888 11 C -0.169 4.169 12 C 0.173 3.827 13 H 0.077 0.923 14 N -0.716 5.716 15 C -0.243 4.243 16 H 0.074 0.926 17 C -0.070 4.070 18 N -0.966 5.966 19 Si 0.967 3.033 20 H -0.281 1.281 21 H -0.297 1.297 22 H -0.279 1.279 23 C -0.107 4.107 24 C -0.113 4.113 25 C -0.130 4.130 26 C -0.111 4.111 27 C -0.117 4.117 28 C -0.131 4.131 29 O 0.095 5.905 30 N -0.390 5.390 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.178 0.822 35 H 0.407 0.593 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.378 0.622 39 H 0.250 0.750 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.049 0.951 45 H 0.097 0.903 46 H 0.114 0.886 47 H 0.124 0.876 48 H 0.130 0.870 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.570 -9.132 21.038 23.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C -0.242 4.242 4 C -0.051 4.051 5 C -0.114 4.114 6 C 0.349 3.651 7 O -0.439 6.439 8 N -0.342 5.342 9 C 0.047 3.953 10 H 0.129 0.871 11 C -0.211 4.211 12 C 0.063 3.937 13 H 0.095 0.905 14 N -0.355 5.355 15 C -0.375 4.375 16 H 0.092 0.908 17 C -0.263 4.263 18 N -0.617 5.617 19 Si 0.797 3.203 20 H -0.207 1.207 21 H -0.224 1.224 22 H -0.205 1.205 23 C -0.109 4.109 24 C -0.150 4.150 25 C -0.167 4.167 26 C -0.149 4.149 27 C -0.154 4.154 28 C -0.168 4.168 29 O 0.031 5.969 30 N -0.097 5.097 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.195 0.805 35 H 0.244 0.756 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.212 0.788 39 H 0.059 0.941 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.068 0.932 45 H 0.115 0.885 46 H 0.132 0.868 47 H 0.142 0.858 48 H 0.148 0.852 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.519 -9.566 21.359 24.294 hybrid contribution 0.360 0.898 -1.577 1.850 sum -6.160 -8.667 19.782 22.458 Atomic orbital electron populations 1.20340 0.83769 1.04880 1.04514 1.24077 1.00445 0.88106 1.01142 1.22510 0.90752 1.01645 1.09337 1.22906 0.95662 0.83575 1.02983 1.19360 0.88628 0.94119 1.09263 1.19168 0.76152 0.88235 0.81535 1.90710 1.48998 1.38327 1.65873 1.45809 1.66841 1.09602 1.11960 1.21996 0.96091 0.85079 0.92161 0.87051 1.24113 0.98147 1.00946 0.97943 1.21336 0.93083 0.96356 0.82967 0.90542 1.42431 1.76908 1.12532 1.03631 1.19626 1.34097 0.93549 0.90210 0.90811 1.25450 1.03567 0.98649 0.98615 1.69788 1.56509 1.21365 1.14027 0.85305 0.78385 0.78722 0.77912 1.20730 1.22360 1.20508 1.23296 0.94468 0.98284 0.94829 1.22702 0.93839 0.99739 0.98734 1.22642 0.97527 0.98495 0.98069 1.22424 0.97410 0.95472 0.99557 1.23278 0.97654 1.03524 0.90958 1.23363 0.92793 1.00659 1.00018 1.84779 1.21735 1.22245 1.68126 1.73865 0.89500 1.24720 1.21580 0.89046 0.90154 0.88159 0.80456 0.75598 0.92437 0.91418 0.78764 0.94113 0.88077 0.91830 0.92649 0.90046 0.93247 0.88466 0.86761 0.85805 0.85224 0.86739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.47 71.24 0.75 -0.19 16 2 C 0.02 0.39 7.33 43.58 0.32 0.71 16 3 C -0.22 -4.07 10.59 22.40 0.24 -3.84 16 4 C 0.01 0.24 6.74 25.04 0.17 0.41 16 5 C -0.11 -2.01 2.44 -53.67 -0.13 -2.14 16 6 C 0.56 13.52 6.77 87.66 0.59 14.11 16 7 O -0.56 -17.19 16.17 -3.02 -0.05 -17.24 16 8 N -0.69 -16.15 5.25 -441.16 -2.32 -18.46 16 9 C 0.15 4.16 4.04 45.28 0.18 4.34 16 10 H 0.11 3.11 7.62 -2.38 -0.02 3.09 16 11 C -0.17 -5.75 7.68 31.23 0.24 -5.51 16 12 C 0.17 6.51 4.35 45.28 0.20 6.70 16 13 H 0.08 2.91 8.12 -2.39 -0.02 2.89 16 14 N -0.72 -34.40 5.35 -321.55 -1.72 -36.12 16 15 C -0.24 -13.14 9.98 84.03 0.84 -12.30 16 16 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 17 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 18 N -0.97 -57.79 13.06 21.65 0.28 -57.51 16 19 Si 0.97 45.64 29.55 68.60 2.03 47.66 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 21 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 C -0.11 -3.08 1.06 -52.32 -0.06 -3.14 16 24 C -0.11 -2.83 7.84 30.89 0.24 -2.59 16 25 C -0.13 -3.64 8.08 31.24 0.25 -3.39 16 26 C -0.11 -3.14 6.77 30.88 0.21 -2.93 16 27 C -0.12 -1.73 9.75 30.62 0.30 -1.43 16 28 C -0.13 -1.86 9.89 30.62 0.30 -1.55 16 29 O 0.10 2.01 10.97 71.63 0.79 2.79 16 30 N -0.39 -8.79 12.07 -49.55 -0.60 -9.39 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.18 2.93 8.06 -2.91 -0.02 2.90 16 35 H 0.41 8.68 6.93 -92.70 -0.64 8.03 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.38 19.35 5.87 -92.71 -0.54 18.81 16 39 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 40 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 44 H 0.05 1.73 6.43 -2.39 -0.02 1.71 16 45 H 0.10 2.20 6.96 -2.38 -0.02 2.18 16 46 H 0.11 1.85 7.83 -2.39 -0.02 1.83 16 47 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.13 1.47 8.00 -2.39 -0.02 1.45 16 49 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -67.33 404.55 3.31 -64.01 By element: Atomic # 1 Polarization: 40.69 SS G_CDS: -0.20 Total: 40.48 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 5.11 Total: -16.23 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -4.35 Total: -121.48 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.74 Total: -14.45 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -67.33 3.31 -64.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078709049.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.436 kcal (2) G-P(sol) polarization free energy of solvation -67.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds