Wall clock time and date at job start Wed Apr 1 2020 02:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47113 * 2 1 4 4 C 1.38129 * 120.03628 * 265.28085 * 3 2 1 5 5 C 1.38261 * 120.07180 * 180.31824 * 4 3 2 6 6 C 1.38306 * 120.14136 * 359.67794 * 5 4 3 7 7 C 1.38097 * 120.06572 * 0.02562 * 6 5 4 8 8 C 1.38855 * 120.03679 * 85.00284 * 3 2 1 9 9 N 1.39926 * 120.06486 * 359.97438 * 8 3 2 10 10 C 1.34781 * 119.99705 * 152.91157 * 9 8 3 11 11 O 1.21288 * 120.00095 * 4.50003 * 10 9 8 12 12 C 1.50703 * 120.00027 * 184.49869 * 10 9 8 13 13 N 1.46493 * 109.46991 * 179.97438 * 12 10 9 14 14 C 1.34782 * 119.99909 * 180.02562 * 13 12 10 15 15 O 1.21277 * 119.99961 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00024 * 180.02562 * 14 13 12 17 17 N 1.46503 * 109.47287 * 179.97438 * 16 14 13 18 18 C 1.36935 * 119.99953 * 269.99764 * 17 16 14 19 19 H 1.08000 * 119.99599 * 191.67392 * 18 17 16 20 20 C 1.38811 * 119.99834 * 11.68192 * 18 17 16 21 21 N 1.31616 * 120.00254 * 25.95367 * 20 18 17 22 22 Si 1.86798 * 119.99469 * 205.95644 * 20 18 17 23 23 H 1.48502 * 109.47531 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47171 * 119.99828 * 22 20 18 25 25 H 1.48509 * 109.47083 * 239.99398 * 22 20 18 26 26 C 1.46501 * 119.99846 * 89.99237 * 17 16 14 27 27 C 1.52998 * 117.49970 * 193.88332 * 26 17 16 28 28 C 1.53002 * 117.49546 * 125.22534 * 26 17 16 29 29 H 1.08994 * 109.47550 * 59.99451 * 1 2 3 30 30 H 1.08997 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.46852 * 300.00096 * 1 2 3 32 32 H 1.09000 * 109.47262 * 240.00271 * 2 1 3 33 33 H 1.08998 * 109.47249 * 119.99658 * 2 1 3 34 34 H 1.08000 * 119.96719 * 0.02562 * 4 3 2 35 35 H 1.07997 * 119.93204 * 179.69850 * 5 4 3 36 36 H 1.07995 * 119.96911 * 180.02562 * 6 5 4 37 37 H 1.08004 * 120.03357 * 180.02562 * 7 6 5 38 38 H 0.96999 * 120.00694 * 332.90165 * 9 8 3 39 39 H 1.09004 * 109.46762 * 59.99980 * 12 10 9 40 40 H 1.08996 * 109.47219 * 300.00113 * 12 10 9 41 41 H 0.96993 * 120.00435 * 0.02562 * 13 12 10 42 42 H 1.09005 * 109.46865 * 299.99767 * 16 14 13 43 43 H 1.08992 * 109.47593 * 59.99418 * 16 14 13 44 44 H 0.97003 * 120.00140 * 175.07260 * 21 20 18 45 45 H 1.09003 * 115.55239 * 339.55622 * 26 17 16 46 46 H 1.09001 * 117.49830 * 0.02562 * 27 26 17 47 47 H 1.08997 * 117.50393 * 145.02106 * 27 26 17 48 48 H 1.08996 * 117.49966 * 214.98022 * 28 26 17 49 49 H 1.09000 * 117.49797 * 359.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3555 2.0399 -1.1917 5 6 2.8227 3.3412 -1.1921 6 6 2.9617 4.0295 -0.0005 7 6 2.6344 3.4182 1.1938 8 6 2.1653 2.1110 1.1975 9 7 1.8327 1.4889 2.4059 10 6 2.4296 1.8769 3.5503 11 8 3.1938 2.8188 3.5466 12 6 2.1476 1.1405 4.8345 13 7 2.9123 1.7503 5.9251 14 6 2.8173 1.2538 7.1746 15 8 2.0992 0.3019 7.3958 16 6 3.6035 1.8814 8.2966 17 7 3.3294 1.1655 9.5450 18 6 2.2973 1.5654 10.3512 19 1 2.2083 1.1681 11.3515 20 6 1.3653 2.4812 9.8826 21 7 1.1377 2.5860 8.5905 22 14 0.4343 3.5649 11.0859 23 1 0.8696 3.2541 12.4713 24 1 0.7156 4.9921 10.7867 25 1 -1.0230 3.3100 10.9565 26 6 4.1596 0.0218 9.9309 27 6 3.6426 -0.8795 11.0540 28 6 4.8216 0.0627 11.3097 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2477 1.5053 -2.1239 35 1 3.0794 3.8214 -2.1247 36 1 3.3264 5.0460 -0.0040 37 1 2.7427 3.9563 2.1240 38 1 1.1724 0.7784 2.4201 39 1 2.4398 0.0960 4.7261 40 1 1.0828 1.1983 5.0602 41 1 3.4869 2.5114 5.7482 42 1 4.6683 1.8240 8.0706 43 1 3.3111 2.9258 8.4053 44 1 0.4368 3.1737 8.2675 45 1 4.7137 -0.4517 9.1204 46 1 2.6846 -0.6216 11.5055 47 1 3.8568 -1.9458 10.9826 48 1 5.8110 -0.3842 11.4064 49 1 4.6398 0.9407 11.9294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299594902.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:59 Heat of formation + Delta-G solvation = 18.201034 kcal Electronic energy + Delta-G solvation = -29963.927665 eV Core-core repulsion = 25893.181619 eV Total energy + Delta-G solvation = -4070.746045 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.88818 -38.98935 -38.09792 -36.68438 -35.17878 -34.06908 -33.61231 -33.16366 -30.57103 -30.26746 -29.50075 -27.84083 -25.86686 -24.13682 -23.75197 -22.93633 -21.41060 -21.11195 -20.52464 -19.95213 -19.46062 -18.06997 -17.16074 -16.50480 -16.13275 -15.84664 -15.66146 -15.64107 -14.92828 -14.85789 -14.37124 -14.28417 -14.00336 -13.86280 -13.83520 -13.64681 -13.34199 -13.19956 -12.63700 -12.44560 -12.31363 -12.14628 -12.07848 -11.89437 -11.65283 -11.27835 -11.20389 -11.16784 -10.80316 -10.68346 -10.59757 -10.43291 -10.30131 -9.94860 -9.79613 -9.72771 -9.37216 -8.89329 -8.58025 -8.32563 -8.22859 -8.09791 -6.80557 -5.85610 -3.10402 1.11172 1.27244 2.48864 2.80681 3.36504 3.45368 3.47815 3.66233 4.11666 4.28062 4.47155 4.52209 4.56764 4.59831 4.90028 4.90190 4.96501 5.05168 5.16041 5.20317 5.27092 5.37154 5.40920 5.46570 5.58739 5.61530 5.67605 5.73401 5.87131 5.87193 5.95287 6.05542 6.13814 6.17217 6.27174 6.29271 6.36974 6.45415 6.46677 6.54975 6.69943 6.92305 6.93101 7.07624 7.10374 7.12582 7.40229 7.80409 7.94834 8.22975 8.62342 9.11779 9.67221 9.84070 10.22441 11.23861 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015490 B = 0.002332 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.240460 B =12005.894609 C =12500.866792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.116 4.116 4 C -0.101 4.101 5 C -0.140 4.140 6 C -0.105 4.105 7 C -0.131 4.131 8 C 0.154 3.846 9 N -0.671 5.671 10 C 0.512 3.488 11 O -0.514 6.514 12 C 0.113 3.887 13 N -0.740 5.740 14 C 0.533 3.467 15 O -0.526 6.526 16 C 0.168 3.832 17 N -0.538 5.538 18 C -0.251 4.251 19 H 0.082 0.918 20 C 0.002 3.998 21 N -0.894 5.894 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.293 1.293 26 C 0.132 3.868 27 C -0.201 4.201 28 C -0.223 4.223 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.153 0.847 38 H 0.412 0.588 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.398 0.602 42 H 0.044 0.956 43 H 0.099 0.901 44 H 0.254 0.746 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.831 -2.116 -19.403 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.119 4.119 5 C -0.159 4.159 6 C -0.124 4.124 7 C -0.151 4.151 8 C 0.059 3.941 9 N -0.315 5.315 10 C 0.301 3.699 11 O -0.389 6.389 12 C -0.016 4.016 13 N -0.400 5.400 14 C 0.319 3.681 15 O -0.399 6.399 16 C 0.037 3.963 17 N -0.253 5.253 18 C -0.380 4.380 19 H 0.099 0.901 20 C -0.196 4.196 21 N -0.538 5.538 22 Si 0.735 3.265 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.221 1.221 26 C 0.022 3.978 27 C -0.240 4.240 28 C -0.264 4.264 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.171 0.829 38 H 0.249 0.751 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.233 0.767 42 H 0.062 0.938 43 H 0.117 0.883 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.115 0.885 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.748 -2.009 -19.178 19.477 hybrid contribution -0.992 0.522 0.287 1.157 sum 1.756 -1.487 -18.891 19.031 Atomic orbital electron populations 1.21797 0.94614 1.02011 1.02338 1.20499 0.96161 0.92516 1.03198 1.19632 1.03835 0.96254 0.92090 1.20785 0.99358 0.95090 0.96694 1.21098 1.01606 0.95076 0.98101 1.21099 0.99361 0.99917 0.92029 1.21683 1.00026 0.93189 1.00176 1.17681 0.99793 0.92020 0.84636 1.43560 1.42981 1.39259 1.05734 1.21216 0.79241 0.84176 0.85302 1.90608 1.35441 1.27486 1.85369 1.20771 0.99468 0.96986 0.84336 1.46062 1.49521 1.37082 1.07315 1.22022 0.82119 0.82661 0.81283 1.90517 1.38515 1.28933 1.81926 1.20587 0.93775 0.98127 0.83767 1.43546 1.32476 1.29651 1.19582 1.19209 1.04472 1.19633 0.94713 0.90059 1.24752 0.97914 1.01208 0.95748 1.69815 1.32575 1.39644 1.11778 0.86178 0.78911 0.80752 0.80707 1.20388 1.21549 1.22052 1.20893 0.96787 0.90923 0.89199 1.23129 0.98732 0.95203 1.06955 1.23423 0.95462 1.02141 1.05385 0.92280 0.92021 0.92709 0.90597 0.91079 0.85981 0.86234 0.85873 0.82936 0.75101 0.89508 0.88906 0.76666 0.93786 0.88267 0.93566 0.89268 0.88526 0.90668 0.90682 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.81 37.16 0.36 -0.64 16 2 C -0.09 -0.65 5.44 -27.88 -0.15 -0.80 16 3 C -0.12 -1.14 5.15 -104.43 -0.54 -1.67 16 4 C -0.10 -0.91 9.68 -39.61 -0.38 -1.29 16 5 C -0.14 -1.30 10.04 -39.55 -0.40 -1.69 16 6 C -0.11 -1.13 10.04 -39.61 -0.40 -1.52 16 7 C -0.13 -1.67 8.78 -39.39 -0.35 -2.02 16 8 C 0.15 1.82 6.42 -83.70 -0.54 1.28 16 9 N -0.67 -7.58 4.95 -9.86 -0.05 -7.62 16 10 C 0.51 7.21 7.78 -10.98 -0.09 7.12 16 11 O -0.51 -8.46 12.64 5.55 0.07 -8.39 16 12 C 0.11 1.76 6.16 -5.20 -0.03 1.73 16 13 N -0.74 -13.87 5.53 -61.48 -0.34 -14.21 16 14 C 0.53 12.20 5.81 -10.98 -0.06 12.14 16 15 O -0.53 -14.12 15.91 5.56 0.09 -14.03 16 16 C 0.17 3.83 5.48 -5.19 -0.03 3.80 16 17 N -0.54 -13.25 2.38 -167.02 -0.40 -13.64 16 18 C -0.25 -6.76 8.92 -15.06 -0.13 -6.89 16 19 H 0.08 2.18 6.24 -52.49 -0.33 1.86 16 20 C 0.00 0.05 4.82 -17.43 -0.08 -0.03 16 21 N -0.89 -24.71 8.91 55.49 0.49 -24.21 16 22 Si 0.90 21.63 29.63 -169.99 -5.04 16.60 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 26 C 0.13 2.83 6.60 -67.93 -0.45 2.38 16 27 C -0.20 -4.05 9.77 -26.70 -0.26 -4.31 16 28 C -0.22 -4.21 10.15 -26.69 -0.27 -4.48 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.39 7.40 -51.92 -0.38 0.00 16 32 H 0.08 0.49 8.05 -51.93 -0.42 0.07 16 33 H 0.07 0.53 7.30 -51.93 -0.38 0.15 16 34 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.15 2.22 5.60 -52.48 -0.29 1.93 16 38 H 0.41 3.63 6.80 -40.82 -0.28 3.35 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.40 7.05 7.44 -40.82 -0.30 6.75 16 42 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 43 H 0.10 2.42 6.56 -51.93 -0.34 2.08 16 44 H 0.25 6.96 8.32 -40.82 -0.34 6.62 16 45 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 46 H 0.10 2.13 6.41 -51.93 -0.33 1.80 16 47 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 48 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 49 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 399.62 15.07 6.02 6.02 Total: -1.00 -32.88 399.62 -10.21 -43.09 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -7.26 Total: 13.31 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -3.79 Total: 3.09 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.29 Total: -59.69 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: 0.16 Total: -22.42 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.04 Total: 16.60 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.88 -10.21 -43.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299594902.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.290 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds