Wall clock time and date at job start Wed Apr 1 2020 02:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47113 * 2 1 4 4 C 1.38129 * 120.03628 * 265.28085 * 3 2 1 5 5 C 1.38261 * 120.07180 * 180.31824 * 4 3 2 6 6 C 1.38306 * 120.14136 * 359.67794 * 5 4 3 7 7 C 1.38097 * 120.06572 * 0.02562 * 6 5 4 8 8 C 1.38855 * 120.03679 * 85.00284 * 3 2 1 9 9 N 1.39926 * 120.06486 * 359.97438 * 8 3 2 10 10 C 1.34781 * 119.99705 * 152.91157 * 9 8 3 11 11 O 1.21288 * 120.00095 * 4.50003 * 10 9 8 12 12 C 1.50703 * 120.00027 * 184.49869 * 10 9 8 13 13 N 1.46493 * 109.46991 * 179.97438 * 12 10 9 14 14 C 1.34782 * 119.99909 * 180.02562 * 13 12 10 15 15 O 1.21277 * 119.99961 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00024 * 180.02562 * 14 13 12 17 17 N 1.46503 * 109.47287 * 179.97438 * 16 14 13 18 18 C 1.36935 * 119.99953 * 269.99764 * 17 16 14 19 19 H 1.08000 * 119.99599 * 191.67392 * 18 17 16 20 20 C 1.38811 * 119.99834 * 11.68192 * 18 17 16 21 21 N 1.31616 * 120.00254 * 25.95367 * 20 18 17 22 22 Si 1.86798 * 119.99469 * 205.95644 * 20 18 17 23 23 H 1.48502 * 109.47531 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47171 * 119.99828 * 22 20 18 25 25 H 1.48509 * 109.47083 * 239.99398 * 22 20 18 26 26 C 1.46501 * 119.99846 * 89.99237 * 17 16 14 27 27 C 1.52998 * 117.49970 * 193.88332 * 26 17 16 28 28 C 1.53002 * 117.49546 * 125.22534 * 26 17 16 29 29 H 1.08994 * 109.47550 * 59.99451 * 1 2 3 30 30 H 1.08997 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.46852 * 300.00096 * 1 2 3 32 32 H 1.09000 * 109.47262 * 240.00271 * 2 1 3 33 33 H 1.08998 * 109.47249 * 119.99658 * 2 1 3 34 34 H 1.08000 * 119.96719 * 0.02562 * 4 3 2 35 35 H 1.07997 * 119.93204 * 179.69850 * 5 4 3 36 36 H 1.07995 * 119.96911 * 180.02562 * 6 5 4 37 37 H 1.08004 * 120.03357 * 180.02562 * 7 6 5 38 38 H 0.96999 * 120.00694 * 332.90165 * 9 8 3 39 39 H 1.09004 * 109.46762 * 59.99980 * 12 10 9 40 40 H 1.08996 * 109.47219 * 300.00113 * 12 10 9 41 41 H 0.96993 * 120.00435 * 0.02562 * 13 12 10 42 42 H 1.09005 * 109.46865 * 299.99767 * 16 14 13 43 43 H 1.08992 * 109.47593 * 59.99418 * 16 14 13 44 44 H 0.97003 * 120.00140 * 175.07260 * 21 20 18 45 45 H 1.09003 * 115.55239 * 339.55622 * 26 17 16 46 46 H 1.09001 * 117.49830 * 0.02562 * 27 26 17 47 47 H 1.08997 * 117.50393 * 145.02106 * 27 26 17 48 48 H 1.08996 * 117.49966 * 214.98022 * 28 26 17 49 49 H 1.09000 * 117.49797 * 359.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3555 2.0399 -1.1917 5 6 2.8227 3.3412 -1.1921 6 6 2.9617 4.0295 -0.0005 7 6 2.6344 3.4182 1.1938 8 6 2.1653 2.1110 1.1975 9 7 1.8327 1.4889 2.4059 10 6 2.4296 1.8769 3.5503 11 8 3.1938 2.8188 3.5466 12 6 2.1476 1.1405 4.8345 13 7 2.9123 1.7503 5.9251 14 6 2.8173 1.2538 7.1746 15 8 2.0992 0.3019 7.3958 16 6 3.6035 1.8814 8.2966 17 7 3.3294 1.1655 9.5450 18 6 2.2973 1.5654 10.3512 19 1 2.2083 1.1681 11.3515 20 6 1.3653 2.4812 9.8826 21 7 1.1377 2.5860 8.5905 22 14 0.4343 3.5649 11.0859 23 1 0.8696 3.2541 12.4713 24 1 0.7156 4.9921 10.7867 25 1 -1.0230 3.3100 10.9565 26 6 4.1596 0.0218 9.9309 27 6 3.6426 -0.8795 11.0540 28 6 4.8216 0.0627 11.3097 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2477 1.5053 -2.1239 35 1 3.0794 3.8214 -2.1247 36 1 3.3264 5.0460 -0.0040 37 1 2.7427 3.9563 2.1240 38 1 1.1724 0.7784 2.4201 39 1 2.4398 0.0960 4.7261 40 1 1.0828 1.1983 5.0602 41 1 3.4869 2.5114 5.7482 42 1 4.6683 1.8240 8.0706 43 1 3.3111 2.9258 8.4053 44 1 0.4368 3.1737 8.2675 45 1 4.7137 -0.4517 9.1204 46 1 2.6846 -0.6216 11.5055 47 1 3.8568 -1.9458 10.9826 48 1 5.8110 -0.3842 11.4064 49 1 4.6398 0.9407 11.9294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299594902.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:58 Heat of formation + Delta-G solvation = -1.605057 kcal Electronic energy + Delta-G solvation = -29964.786521 eV Core-core repulsion = 25893.181619 eV Total energy + Delta-G solvation = -4071.604902 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.89834 -40.26664 -39.53479 -38.36646 -36.10192 -35.32942 -34.96742 -34.74730 -32.45106 -31.26200 -30.31676 -29.27255 -27.50880 -25.51820 -24.78031 -23.93701 -22.97234 -21.87894 -21.72690 -21.55160 -21.15902 -19.16505 -18.42933 -18.12715 -17.52013 -17.21180 -17.01123 -16.75454 -16.45046 -16.00428 -15.87514 -15.72652 -15.29894 -15.04805 -14.83034 -14.54165 -14.46284 -14.32854 -14.18151 -13.86169 -13.74189 -13.38170 -13.12202 -13.08012 -12.77064 -12.70081 -12.64235 -12.37407 -12.21753 -12.09118 -11.89458 -11.87593 -11.82706 -11.68738 -11.48902 -10.99319 -10.83240 -10.43318 -10.29399 -9.76259 -9.68509 -9.05720 -8.68657 -7.88519 -5.13624 0.27048 0.46266 1.40028 1.44100 1.48138 1.57124 1.74024 2.41211 2.50003 2.78815 2.85901 3.14218 3.45412 3.47460 3.52231 3.81113 3.92658 4.21196 4.27949 4.29656 4.31215 4.38579 4.45162 4.45743 4.47263 4.51928 4.56652 4.58984 4.64465 4.75605 4.93844 4.97352 5.00405 5.03958 5.09125 5.16065 5.20977 5.33222 5.34858 5.38691 5.44089 5.52401 5.59117 5.64676 5.71641 5.77842 6.11123 6.26397 6.27763 6.88614 6.94964 7.14563 7.80702 8.01855 8.25965 9.18164 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015490 B = 0.002332 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.240460 B =12005.894609 C =12500.866792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.113 4.113 4 C -0.101 4.101 5 C -0.136 4.136 6 C -0.116 4.116 7 C -0.157 4.157 8 C 0.129 3.871 9 N -0.654 5.654 10 C 0.519 3.481 11 O -0.541 6.541 12 C 0.115 3.885 13 N -0.732 5.732 14 C 0.537 3.463 15 O -0.570 6.570 16 C 0.166 3.834 17 N -0.556 5.556 18 C -0.255 4.255 19 H 0.075 0.925 20 C -0.047 4.047 21 N -0.911 5.911 22 Si 0.961 3.039 23 H -0.273 1.273 24 H -0.288 1.288 25 H -0.302 1.302 26 C 0.104 3.896 27 C -0.203 4.203 28 C -0.194 4.194 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.424 0.576 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.403 0.597 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.245 0.755 45 H 0.104 0.896 46 H 0.070 0.930 47 H 0.101 0.899 48 H 0.111 0.889 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.696 -3.115 -21.170 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C -0.116 4.116 4 C -0.120 4.120 5 C -0.154 4.154 6 C -0.135 4.135 7 C -0.177 4.177 8 C 0.035 3.965 9 N -0.299 5.299 10 C 0.307 3.693 11 O -0.418 6.418 12 C -0.013 4.013 13 N -0.389 5.389 14 C 0.324 3.676 15 O -0.447 6.447 16 C 0.036 3.964 17 N -0.271 5.271 18 C -0.384 4.384 19 H 0.092 0.908 20 C -0.242 4.242 21 N -0.557 5.557 22 Si 0.791 3.209 23 H -0.198 1.198 24 H -0.215 1.215 25 H -0.230 1.230 26 C -0.005 4.005 27 C -0.242 4.242 28 C -0.234 4.234 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.170 0.830 35 H 0.165 0.835 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.263 0.737 39 H 0.120 0.880 40 H 0.102 0.898 41 H 0.240 0.760 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.055 0.945 45 H 0.122 0.878 46 H 0.088 0.912 47 H 0.120 0.880 48 H 0.130 0.870 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.633 -3.016 -20.979 21.504 hybrid contribution -1.213 0.796 0.730 1.624 sum 2.420 -2.220 -20.250 20.514 Atomic orbital electron populations 1.21788 0.93988 1.02772 1.02051 1.20564 0.96604 0.91064 1.04047 1.19933 1.02874 0.97262 0.91489 1.21204 0.98133 0.95137 0.97493 1.21456 1.00243 0.95208 0.98494 1.21301 0.99506 1.00710 0.91982 1.21617 1.01943 0.94015 1.00099 1.17859 1.01249 0.92178 0.85197 1.43314 1.42498 1.39096 1.05024 1.20843 0.79262 0.83692 0.85512 1.90614 1.36907 1.28529 1.85748 1.20816 0.98489 0.97777 0.84200 1.45810 1.49225 1.36735 1.07170 1.21915 0.81410 0.81987 0.82318 1.90484 1.40430 1.30913 1.82897 1.20590 0.95487 0.96815 0.83557 1.43678 1.32360 1.31005 1.20098 1.19350 1.04806 1.19459 0.94819 0.90773 1.25367 0.99304 1.02447 0.97106 1.69967 1.32918 1.40028 1.12778 0.85293 0.77161 0.79139 0.79299 1.19778 1.21518 1.22975 1.21212 0.97605 0.90973 0.90682 1.23134 0.98261 0.96812 1.05989 1.23381 0.96610 1.01080 1.02369 0.92044 0.90749 0.93556 0.88846 0.91173 0.83028 0.83470 0.84751 0.85527 0.73716 0.87994 0.89765 0.76038 0.90638 0.90354 0.94514 0.87847 0.91163 0.88049 0.87039 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.81 71.98 0.71 -0.98 16 2 C -0.09 -1.08 5.44 29.85 0.16 -0.92 16 3 C -0.11 -2.02 5.15 -19.74 -0.10 -2.12 16 4 C -0.10 -1.54 9.68 22.25 0.22 -1.33 16 5 C -0.14 -2.19 10.04 22.29 0.22 -1.96 16 6 C -0.12 -2.42 10.04 22.25 0.22 -2.19 16 7 C -0.16 -4.10 8.78 22.39 0.20 -3.91 16 8 C 0.13 3.03 6.42 38.15 0.24 3.28 16 9 N -0.65 -14.78 4.95 -303.50 -1.50 -16.28 16 10 C 0.52 14.92 7.78 87.66 0.68 15.60 16 11 O -0.54 -18.45 12.64 -3.06 -0.04 -18.49 16 12 C 0.12 3.65 6.16 85.64 0.53 4.18 16 13 N -0.73 -27.96 5.53 -466.80 -2.58 -30.54 16 14 C 0.54 25.01 5.81 87.65 0.51 25.52 16 15 O -0.57 -31.24 15.91 -3.02 -0.05 -31.29 16 16 C 0.17 7.63 5.48 85.63 0.47 8.10 16 17 N -0.56 -27.53 2.38 -682.34 -1.62 -29.16 16 18 C -0.25 -13.90 8.92 84.03 0.75 -13.15 16 19 H 0.07 4.06 6.24 -2.91 -0.02 4.04 16 20 C -0.05 -2.57 4.82 84.86 0.41 -2.16 16 21 N -0.91 -51.76 8.91 21.65 0.19 -51.57 16 22 Si 0.96 45.53 29.63 68.60 2.03 47.57 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 25 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 26 C 0.10 4.35 6.60 44.99 0.30 4.65 16 27 C -0.20 -7.94 9.77 30.62 0.30 -7.64 16 28 C -0.19 -6.91 10.15 30.62 0.31 -6.60 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.60 7.40 -2.38 -0.02 0.58 16 32 H 0.09 0.88 8.05 -2.39 -0.02 0.86 16 33 H 0.07 0.91 7.30 -2.39 -0.02 0.89 16 34 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.13 3.95 5.60 -2.91 -0.02 3.93 16 38 H 0.42 7.28 6.80 -92.71 -0.63 6.65 16 39 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.08 2.85 8.14 -2.39 -0.02 2.84 16 41 H 0.40 14.62 7.44 -92.71 -0.69 13.93 16 42 H 0.08 2.91 8.07 -2.38 -0.02 2.90 16 43 H 0.08 3.92 6.56 -2.39 -0.02 3.91 16 44 H 0.25 13.87 8.32 -92.71 -0.77 13.10 16 45 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 46 H 0.07 3.12 6.41 -2.39 -0.02 3.11 16 47 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 48 H 0.11 3.17 8.14 -2.39 -0.02 3.16 16 49 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -72.64 399.62 2.22 -70.41 By element: Atomic # 1 Polarization: 41.33 SS G_CDS: -0.34 Total: 40.99 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 6.12 Total: 18.35 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -5.51 Total: -127.55 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -0.09 Total: -49.78 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.57 kcal Total: -72.64 2.22 -70.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299594902.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.808 kcal (2) G-P(sol) polarization free energy of solvation -72.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds