Wall clock time and date at job start Wed Apr 1 2020 03:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.47320 * 2 1 4 4 C 1.38018 * 119.51164 * 125.23685 * 3 2 1 5 5 C 1.39933 * 119.13051 * 180.27767 * 4 3 2 6 6 C 1.48162 * 120.88968 * 179.77424 * 5 4 3 7 7 O 1.21513 * 120.00282 * 359.71486 * 6 5 4 8 8 N 1.34775 * 119.99797 * 179.71618 * 6 5 4 9 9 C 1.46499 * 120.00136 * 179.97438 * 8 6 5 10 10 H 1.09000 * 115.56284 * 9.29775 * 9 8 6 11 11 C 1.53030 * 117.50552 * 223.58220 * 9 8 6 12 12 C 1.52819 * 117.50144 * 154.99782 * 9 8 6 13 13 C 1.53180 * 117.71545 * 359.86504 * 12 9 8 14 14 C 1.53349 * 108.76892 * 158.87389 * 13 12 9 15 15 N 1.46844 * 108.81070 * 51.30871 * 14 13 12 16 16 C 1.36940 * 120.37606 * 123.11293 * 15 14 13 17 17 H 1.07998 * 119.99252 * 210.70125 * 16 15 14 18 18 C 1.38807 * 120.00375 * 30.69922 * 16 15 14 19 19 N 1.31622 * 120.00154 * 199.02082 * 18 16 15 20 20 Si 1.86801 * 119.99999 * 19.02201 * 18 16 15 21 21 H 1.48498 * 109.47059 * 272.96128 * 20 18 16 22 22 H 1.48503 * 109.47024 * 32.96369 * 20 18 16 23 23 H 1.48496 * 109.47060 * 152.95887 * 20 18 16 24 24 C 1.46839 * 119.24260 * 303.37541 * 15 14 13 25 25 C 1.52875 * 109.07233 * 56.58591 * 24 15 14 26 26 C 1.39606 * 118.21641 * 359.49463 * 5 4 3 27 27 C 1.38855 * 118.94774 * 0.25802 * 26 5 4 28 28 O 1.35688 * 119.62221 * 180.02562 * 27 26 5 29 29 N 1.31876 * 119.51328 * 304.99938 * 3 2 1 30 30 H 1.09004 * 109.47293 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47508 * 300.00116 * 1 2 3 32 32 H 1.09009 * 109.46994 * 59.99812 * 1 2 3 33 33 H 1.09001 * 109.47508 * 239.99884 * 2 1 3 34 34 H 1.09002 * 109.47359 * 120.00151 * 2 1 3 35 35 H 1.08008 * 120.43766 * 0.04509 * 4 3 2 36 36 H 0.97008 * 119.99843 * 359.97438 * 8 6 5 37 37 H 1.09005 * 117.50066 * 145.04483 * 11 9 8 38 38 H 1.09004 * 117.52941 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.59110 * 39.09114 * 13 12 9 40 40 H 1.08998 * 109.58959 * 278.65906 * 13 12 9 41 41 H 1.08999 * 109.58446 * 291.51445 * 14 13 12 42 42 H 1.08997 * 109.58512 * 171.10922 * 14 13 12 43 43 H 0.96999 * 120.00083 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.58204 * 176.42127 * 24 15 14 45 45 H 1.09000 * 109.58060 * 296.82863 * 24 15 14 46 46 H 1.08998 * 109.66431 * 189.04710 * 25 24 15 47 47 H 1.08996 * 109.44712 * 68.65348 * 25 24 15 48 48 H 1.07998 * 120.52916 * 180.22692 * 26 5 4 49 49 H 0.96704 * 113.99933 * 89.99514 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9124 1.8308 0.9810 5 6 3.3692 3.1534 0.9769 6 6 4.3104 3.6364 2.0142 7 8 4.6919 2.8820 2.8871 8 7 4.7434 4.9124 1.9897 9 6 5.6736 5.3902 3.0157 10 1 6.0907 4.6219 3.6668 11 6 5.4038 6.7660 3.6288 12 6 6.5696 6.5756 2.6590 13 6 6.4328 7.1753 1.2561 14 6 6.9834 8.6064 1.2754 15 7 8.3264 8.5891 1.8690 16 6 9.3979 9.0801 1.1719 17 1 10.3810 8.6608 1.3272 18 6 9.2206 10.1165 0.2658 19 7 10.1271 10.3425 -0.6614 20 14 7.6953 11.1907 0.3622 21 1 6.5995 10.5658 -0.4213 22 1 7.2748 11.3272 1.7799 23 1 7.9993 12.5330 -0.1953 24 6 8.5081 8.0339 3.2162 25 6 7.9874 6.5967 3.2387 26 6 2.9190 4.0041 -0.0344 27 6 2.0376 3.5090 -0.9863 28 8 1.5917 4.3236 -1.9755 29 7 1.6283 2.2528 -0.9401 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.2412 1.1409 1.7442 36 1 4.4391 5.5146 1.2927 37 1 5.6434 6.9030 4.6834 38 1 4.5344 7.3164 3.2688 39 1 5.3821 7.1919 0.9667 40 1 7.0004 6.5750 0.5451 41 1 6.3286 9.2417 1.8719 42 1 7.0391 8.9902 0.2568 43 1 10.0033 11.0670 -1.2944 44 1 9.5671 8.0409 3.4744 45 1 7.9505 8.6327 3.9363 46 1 7.9682 6.2296 4.2648 47 1 8.6387 5.9653 2.6344 48 1 3.2506 5.0311 -0.0755 49 1 2.1449 4.3185 -2.7687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016734450.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:33 Heat of formation + Delta-G solvation = 7.437982 kcal Electronic energy + Delta-G solvation = -29982.201832 eV Core-core repulsion = 25910.989066 eV Total energy + Delta-G solvation = -4071.212766 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.25514 -39.99944 -38.67572 -37.63496 -35.84393 -34.54055 -33.35320 -32.48897 -31.66685 -30.63847 -29.82154 -28.75036 -25.69745 -24.37794 -24.21572 -23.13181 -22.85867 -21.92468 -21.04888 -20.47112 -19.21139 -18.47581 -17.58185 -17.36027 -16.60260 -16.20360 -16.04013 -15.75286 -15.36815 -15.12489 -14.92453 -14.47082 -14.41398 -14.19486 -14.03083 -13.83515 -13.54023 -13.04124 -12.89778 -12.67832 -12.49523 -12.42466 -12.21287 -12.09876 -12.03692 -11.84513 -11.80135 -11.46447 -11.32901 -10.81586 -10.66453 -10.57899 -10.43092 -10.30076 -10.08539 -9.86049 -9.82131 -9.60861 -9.50588 -9.27170 -8.84571 -8.54096 -6.96232 -5.99250 -3.38008 0.25402 0.51358 2.45363 2.69392 3.05604 3.25020 3.33920 3.43978 3.47181 3.94221 3.96639 4.14149 4.48051 4.48456 4.50923 4.70212 4.70961 4.79013 4.85160 4.89008 4.90106 5.03130 5.06059 5.23731 5.28262 5.31799 5.36249 5.49393 5.54268 5.62980 5.70082 5.78620 5.83884 5.85393 5.86497 5.98899 6.00688 6.09237 6.24488 6.28077 6.32387 6.37602 6.56640 6.62463 6.65440 6.89672 7.03633 7.18728 7.44522 7.85201 7.96119 8.30683 8.91618 9.67925 10.06725 11.16861 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.002478 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.912561 B =11298.002614 C =12482.790478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C 0.153 3.847 4 C -0.124 4.124 5 C -0.065 4.065 6 C 0.561 3.439 7 O -0.527 6.527 8 N -0.686 5.686 9 C 0.072 3.928 10 H 0.137 0.863 11 C -0.182 4.182 12 C -0.099 4.099 13 C -0.099 4.099 14 C 0.129 3.871 15 N -0.604 5.604 16 C -0.261 4.261 17 H 0.084 0.916 18 C 0.024 3.976 19 N -0.909 5.909 20 Si 0.885 3.115 21 H -0.287 1.287 22 H -0.272 1.272 23 H -0.303 1.303 24 C 0.152 3.848 25 C -0.099 4.099 26 C -0.162 4.162 27 C 0.316 3.684 28 O -0.479 6.479 29 N -0.485 5.485 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.153 0.847 36 H 0.402 0.598 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.025 0.975 42 H 0.076 0.924 43 H 0.263 0.737 44 H 0.065 0.935 45 H 0.024 0.976 46 H 0.059 0.941 47 H 0.068 0.932 48 H 0.145 0.855 49 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.635 -17.447 2.327 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C 0.015 3.985 4 C -0.145 4.145 5 C -0.076 4.076 6 C 0.348 3.652 7 O -0.404 6.404 8 N -0.336 5.336 9 C -0.034 4.034 10 H 0.155 0.845 11 C -0.220 4.220 12 C -0.101 4.101 13 C -0.138 4.138 14 C 0.004 3.996 15 N -0.327 5.327 16 C -0.390 4.390 17 H 0.102 0.898 18 C -0.175 4.175 19 N -0.551 5.551 20 Si 0.716 3.284 21 H -0.215 1.215 22 H -0.197 1.197 23 H -0.232 1.232 24 C 0.026 3.974 25 C -0.138 4.138 26 C -0.184 4.184 27 C 0.137 3.863 28 O -0.286 6.286 29 N -0.205 5.205 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.170 0.830 36 H 0.239 0.761 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.043 0.957 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.042 0.958 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.163 0.837 49 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -18.277 -17.953 2.556 25.747 hybrid contribution -0.165 1.441 -0.246 1.471 sum -18.442 -16.512 2.311 24.861 Atomic orbital electron populations 1.21690 0.93804 1.01982 1.02815 1.20558 0.97285 0.89571 1.03757 1.21029 0.92465 0.95840 0.89188 1.22142 0.97245 0.95441 0.99668 1.20269 0.97415 0.94637 0.95245 1.18034 0.80610 0.82106 0.84496 1.90777 1.57478 1.55219 1.36919 1.45309 1.46365 1.11456 1.30437 1.21926 0.95681 0.91587 0.94159 0.84544 1.23587 1.00359 0.98465 0.99630 1.21952 0.92929 0.98416 0.96795 1.21642 0.98921 0.99643 0.93601 1.21348 0.86870 0.93053 0.98378 1.44262 1.04075 1.71281 1.13090 1.18921 0.89101 1.12473 1.18456 0.89848 1.25365 0.97024 0.97568 0.97536 1.69822 1.36100 1.32267 1.16938 0.86954 0.83185 0.80088 0.78162 1.21472 1.19744 1.23153 1.20798 0.99136 0.90686 0.86800 1.21612 0.92862 1.00341 0.99010 1.22317 0.98135 1.01625 0.96303 1.18929 0.90623 0.86445 0.90274 1.84806 1.54954 1.61265 1.27582 1.66785 1.24322 1.03620 1.25795 0.92037 0.92787 0.91505 0.89493 0.89676 0.82953 0.76103 0.87983 0.88805 0.93503 0.90955 0.95717 0.90636 0.92729 0.91620 0.95817 0.92275 0.91303 0.83716 0.73736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.77 37.16 0.36 -0.58 16 2 C -0.07 -0.48 6.33 -27.88 -0.18 -0.66 16 3 C 0.15 1.42 6.17 -82.65 -0.51 0.91 16 4 C -0.12 -1.22 9.27 -39.03 -0.36 -1.58 16 5 C -0.06 -0.69 5.91 -104.68 -0.62 -1.31 16 6 C 0.56 7.08 7.80 -12.19 -0.10 6.99 16 7 O -0.53 -8.15 16.01 5.35 0.09 -8.06 16 8 N -0.69 -8.02 5.30 -54.73 -0.29 -8.31 16 9 C 0.07 0.92 6.14 -68.01 -0.42 0.50 16 10 H 0.14 1.85 7.40 -51.93 -0.38 1.46 16 11 C -0.18 -2.26 9.86 -26.80 -0.26 -2.53 16 12 C -0.10 -1.44 1.94 -154.50 -0.30 -1.74 16 13 C -0.10 -1.59 5.37 -26.46 -0.14 -1.73 16 14 C 0.13 2.66 4.23 -3.67 -0.02 2.64 16 15 N -0.60 -13.74 2.68 -172.55 -0.46 -14.20 16 16 C -0.26 -7.10 9.99 -15.06 -0.15 -7.25 16 17 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 18 C 0.02 0.68 5.24 -17.43 -0.09 0.59 16 19 N -0.91 -27.36 13.97 55.49 0.78 -26.58 16 20 Si 0.89 21.86 24.44 -169.99 -4.15 17.70 16 21 H -0.29 -6.70 6.39 56.52 0.36 -6.34 16 22 H -0.27 -6.67 7.02 56.52 0.40 -6.27 16 23 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 24 C 0.15 2.85 6.48 -3.92 -0.03 2.82 16 25 C -0.10 -1.53 5.81 -26.70 -0.16 -1.69 16 26 C -0.16 -1.54 9.55 -38.84 -0.37 -1.91 16 27 C 0.32 3.18 7.74 -17.17 -0.13 3.05 16 28 O -0.48 -4.18 13.56 -18.77 -0.25 -4.43 16 29 N -0.49 -5.14 9.87 -9.59 -0.09 -5.23 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.52 7.94 -51.92 -0.41 0.11 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.42 7.86 -51.93 -0.41 0.01 16 35 H 0.15 1.36 7.63 -52.48 -0.40 0.96 16 36 H 0.40 4.02 5.26 -40.82 -0.21 3.81 16 37 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.62 6.75 -51.93 -0.35 0.27 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.02 0.50 7.44 -51.93 -0.39 0.12 16 42 H 0.08 1.71 4.36 -51.93 -0.23 1.49 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 44 H 0.07 1.24 7.92 -51.93 -0.41 0.83 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 47 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 48 H 0.15 1.11 6.53 -52.49 -0.34 0.77 16 49 H 0.40 1.61 9.06 45.56 0.41 2.02 16 LS Contribution 391.70 15.07 5.90 5.90 Total: -1.00 -33.78 391.70 -8.49 -42.27 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.53 Total: 4.41 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -3.46 Total: -3.47 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.07 Total: -54.32 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.17 Total: -12.49 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.15 Total: 17.70 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.78 -8.49 -42.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016734450.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.708 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds