Wall clock time and date at job start Wed Apr 1 2020 03:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47301 * 2 1 4 4 C 1.38017 * 119.51403 * 124.99531 * 3 2 1 5 5 C 1.39930 * 119.13106 * 179.97438 * 4 3 2 6 6 C 1.48162 * 120.89185 * 180.02562 * 5 4 3 7 7 O 1.21521 * 119.99923 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00188 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00201 * 179.97438 * 8 6 5 10 10 C 1.53144 * 109.43515 * 204.99738 * 9 8 6 11 11 C 1.53702 * 108.88036 * 186.04318 * 10 9 8 12 12 H 1.08997 * 112.10682 * 187.61703 * 11 10 9 13 13 C 1.54615 * 107.83165 * 312.22912 * 11 10 9 14 14 C 1.54821 * 104.65046 * 88.54681 * 13 11 10 15 15 C 1.54604 * 104.65931 * 0.02562 * 14 13 11 16 16 H 1.08997 * 112.69877 * 147.18484 * 15 14 13 17 17 C 1.53155 * 109.43233 * 84.77359 * 9 8 6 18 18 N 1.48297 * 107.27585 * 64.00387 * 11 10 9 19 19 C 1.36940 * 128.20859 * 107.39810 * 18 11 10 20 20 H 1.07996 * 120.00026 * 164.66998 * 19 18 11 21 21 C 1.38809 * 119.99835 * 344.67165 * 19 18 11 22 22 N 1.31622 * 119.99987 * 350.67709 * 21 19 18 23 23 Si 1.86803 * 119.99970 * 170.67724 * 21 19 18 24 24 H 1.48495 * 109.47151 * 180.02562 * 23 21 19 25 25 H 1.48498 * 109.46858 * 299.99824 * 23 21 19 26 26 H 1.48496 * 109.47107 * 60.00176 * 23 21 19 27 27 C 1.39617 * 118.21734 * 0.27609 * 5 4 3 28 28 C 1.38854 * 118.94661 * 359.48742 * 27 5 4 29 29 O 1.35684 * 119.61987 * 180.27276 * 28 27 5 30 30 N 1.31882 * 119.51122 * 305.02232 * 3 2 1 31 31 H 1.08997 * 109.46781 * 59.99833 * 1 2 3 32 32 H 1.09000 * 109.47056 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46958 * 300.00111 * 1 2 3 34 34 H 1.09003 * 109.47488 * 240.00361 * 2 1 3 35 35 H 1.09002 * 109.47556 * 119.99736 * 2 1 3 36 36 H 1.07993 * 120.43611 * 0.02742 * 4 3 2 37 37 H 0.97000 * 119.99968 * 359.97438 * 8 6 5 38 38 H 1.08999 * 109.39927 * 324.89129 * 9 8 6 39 39 H 1.09003 * 109.56744 * 66.22790 * 10 9 8 40 40 H 1.08995 * 109.67155 * 305.91797 * 10 9 8 41 41 H 1.08997 * 110.38392 * 207.48156 * 13 11 10 42 42 H 1.09001 * 110.37926 * 329.84457 * 13 11 10 43 43 H 1.09000 * 110.33825 * 241.26477 * 14 13 11 44 44 H 1.09010 * 110.62193 * 118.88638 * 14 13 11 45 45 H 1.08988 * 109.57031 * 293.77452 * 17 9 8 46 46 H 1.09001 * 109.56575 * 54.14456 * 17 9 8 47 47 H 0.97004 * 119.99858 * 179.97438 * 22 21 19 48 48 H 1.07998 * 120.52523 * 179.71926 * 27 5 4 49 49 H 0.96698 * 113.99211 * 270.24661 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9085 1.8322 0.9839 5 6 3.3703 3.1531 0.9759 6 6 4.3119 3.6360 2.0130 7 8 4.6938 2.8815 2.8857 8 7 4.7449 4.9121 1.9884 9 6 5.6754 5.3897 3.0142 10 6 5.5333 6.9071 3.1643 11 6 6.6161 7.4150 4.1297 12 1 6.4823 8.4676 4.3791 13 6 6.6055 6.5006 5.3764 14 6 7.5780 5.3483 5.0252 15 6 8.0805 5.6807 3.6014 16 1 9.1076 5.3578 3.4318 17 6 7.1094 5.0440 2.6020 18 7 7.9304 7.1520 3.4951 19 6 8.7975 8.0537 2.9379 20 1 9.8185 7.7664 2.7348 21 6 8.3640 9.3369 2.6341 22 7 7.0838 9.6338 2.7078 23 14 9.5975 10.6424 2.1206 24 1 8.8858 11.9180 1.8536 25 1 10.5852 10.8460 3.2106 26 1 10.3020 10.2010 0.8902 27 6 2.9159 4.0052 -0.0324 28 6 2.0382 3.5087 -0.9870 29 8 1.5924 4.3234 -1.9762 30 7 1.6280 2.2529 -0.9399 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.2340 1.1435 1.7494 37 1 4.4404 5.5143 1.2916 38 1 5.4452 4.9080 3.9644 39 1 4.5474 7.1436 3.5645 40 1 5.6573 7.3852 2.1926 41 1 6.9598 7.0467 6.2507 42 1 5.6032 6.1100 5.5522 43 1 7.0516 4.3939 5.0291 44 1 8.4128 5.3234 5.7258 45 1 7.2390 3.9619 2.6041 46 1 7.3067 5.4353 1.6039 47 1 6.7809 10.5306 2.4959 48 1 3.2448 5.0332 -0.0714 49 1 0.7808 4.8010 -1.7563 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021326607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:20 Heat of formation + Delta-G solvation = -16.842435 kcal Electronic energy + Delta-G solvation = -30712.256053 eV Core-core repulsion = 26639.990408 eV Total energy + Delta-G solvation = -4072.265644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.06577 -39.92314 -38.62899 -37.50606 -34.70432 -34.19343 -32.73886 -32.39810 -30.35597 -30.00542 -29.36179 -29.20337 -25.52717 -24.72389 -23.85831 -23.37607 -22.66175 -21.47089 -20.28296 -19.42174 -19.05174 -18.51855 -17.46243 -17.20099 -16.59984 -15.98365 -15.93611 -15.57303 -14.99945 -14.70196 -14.56479 -14.43057 -14.27235 -14.08159 -13.41949 -13.09972 -13.04037 -12.83208 -12.64717 -12.27844 -12.18041 -12.06005 -11.95215 -11.75654 -11.59246 -11.38793 -11.35627 -11.03037 -10.86584 -10.82063 -10.56497 -10.24696 -10.17744 -10.10106 -9.90472 -9.64810 -9.61370 -9.43406 -9.36916 -9.11714 -8.69420 -8.65781 -6.87573 -5.82128 -3.16298 0.46767 0.67403 2.74077 3.15110 3.25332 3.36416 3.41579 3.42308 3.56488 4.11986 4.42992 4.44484 4.66682 4.70533 4.87436 4.94367 5.00863 5.16664 5.23250 5.35609 5.40401 5.47568 5.57117 5.58725 5.61858 5.72870 5.80302 5.83672 5.89584 5.92018 5.95361 6.00063 6.12848 6.14676 6.25707 6.35405 6.46528 6.60770 6.64103 6.70217 6.83582 6.89645 7.01336 7.05771 7.16586 7.40290 7.51526 7.58822 7.64946 7.72052 8.19089 8.24382 9.09122 9.71198 10.50175 11.30528 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016474 B = 0.002626 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.224061 B =10659.439847 C =11780.442018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C 0.150 3.850 4 C -0.126 4.126 5 C -0.062 4.062 6 C 0.552 3.448 7 O -0.532 6.532 8 N -0.709 5.709 9 C 0.146 3.854 10 C -0.122 4.122 11 C 0.183 3.817 12 H 0.114 0.886 13 C -0.143 4.143 14 C -0.132 4.132 15 C 0.150 3.850 16 H 0.068 0.932 17 C -0.136 4.136 18 N -0.583 5.583 19 C -0.222 4.222 20 H 0.074 0.926 21 C -0.005 4.005 22 N -0.914 5.914 23 Si 0.910 3.090 24 H -0.291 1.291 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.161 4.161 28 C 0.313 3.687 29 O -0.479 6.479 30 N -0.488 5.488 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.152 0.848 37 H 0.397 0.603 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.253 0.747 48 H 0.147 0.853 49 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.041 -13.774 -3.183 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C 0.012 3.988 4 C -0.147 4.147 5 C -0.073 4.073 6 C 0.337 3.663 7 O -0.410 6.410 8 N -0.359 5.359 9 C 0.043 3.957 10 C -0.162 4.162 11 C 0.075 3.925 12 H 0.132 0.868 13 C -0.183 4.183 14 C -0.171 4.171 15 C 0.041 3.959 16 H 0.086 0.914 17 C -0.176 4.176 18 N -0.304 5.304 19 C -0.350 4.350 20 H 0.092 0.908 21 C -0.202 4.202 22 N -0.560 5.560 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.212 1.212 26 H -0.212 1.212 27 C -0.183 4.183 28 C 0.134 3.866 29 O -0.286 6.286 30 N -0.208 5.208 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.169 0.831 37 H 0.232 0.768 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.164 0.836 49 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -12.781 -14.430 -3.600 19.609 hybrid contribution 0.561 1.597 -0.097 1.695 sum -12.219 -12.833 -3.697 18.102 Atomic orbital electron populations 1.21678 0.93916 1.01896 1.02676 1.20544 0.97191 0.89732 1.03676 1.20989 0.92856 0.95850 0.89115 1.22142 0.96871 0.95640 1.00016 1.20460 0.96993 0.94458 0.95412 1.18101 0.80845 0.82801 0.84518 1.90765 1.58114 1.55168 1.36927 1.46380 1.46919 1.10946 1.31627 1.21458 0.87903 0.96359 0.89969 1.22407 0.99106 0.91185 1.03546 1.21472 0.84398 0.98860 0.87734 0.86824 1.22885 0.97697 0.97556 1.00117 1.22729 0.98707 0.97665 0.98022 1.21440 0.95983 0.86336 0.92123 0.91396 1.22477 0.95150 0.98909 1.01113 1.45204 1.19343 0.99600 1.66253 1.18957 0.90960 0.91389 1.33680 0.90789 1.24813 0.95984 0.98324 1.01046 1.69838 1.12224 1.19889 1.54095 0.86238 0.80245 0.81099 0.78389 1.21665 1.21215 1.21192 1.22356 1.00229 1.01684 0.94053 1.18932 0.93420 0.87252 0.87014 1.84818 1.46813 1.58080 1.38847 1.66758 1.25806 1.04020 1.24233 0.91586 0.92144 0.92807 0.89629 0.89729 0.83077 0.76807 0.89638 0.93730 0.90246 0.92706 0.92819 0.92287 0.92733 0.93254 0.91996 0.93668 0.83577 0.74071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.77 37.16 0.36 -0.66 16 2 C -0.07 -0.57 6.33 -27.88 -0.18 -0.74 16 3 C 0.15 1.59 6.18 -82.65 -0.51 1.08 16 4 C -0.13 -1.45 9.27 -39.03 -0.36 -1.81 16 5 C -0.06 -0.79 5.91 -104.67 -0.62 -1.41 16 6 C 0.55 8.44 7.76 -12.19 -0.09 8.35 16 7 O -0.53 -9.64 16.11 5.35 0.09 -9.55 16 8 N -0.71 -10.71 5.03 -54.50 -0.27 -10.99 16 9 C 0.15 2.56 2.09 -67.78 -0.14 2.42 16 10 C -0.12 -2.38 5.00 -26.29 -0.13 -2.51 16 11 C 0.18 3.99 3.15 -65.73 -0.21 3.78 16 12 H 0.11 2.84 6.33 -51.93 -0.33 2.51 16 13 C -0.14 -2.67 6.01 -24.92 -0.15 -2.82 16 14 C -0.13 -2.38 6.01 -24.93 -0.15 -2.53 16 15 C 0.15 3.02 4.29 -66.00 -0.28 2.74 16 16 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 17 C -0.14 -2.57 5.17 -26.54 -0.14 -2.70 16 18 N -0.58 -13.78 2.82 -153.06 -0.43 -14.21 16 19 C -0.22 -5.82 10.38 -15.06 -0.16 -5.97 16 20 H 0.07 1.91 7.85 -52.49 -0.41 1.50 16 21 C 0.00 -0.13 5.42 -17.43 -0.09 -0.22 16 22 N -0.91 -24.62 10.58 55.49 0.59 -24.03 16 23 Si 0.91 21.19 29.56 -169.99 -5.03 16.16 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 C -0.16 -1.82 9.55 -38.84 -0.37 -2.19 16 28 C 0.31 3.57 7.74 -17.16 -0.13 3.43 16 29 O -0.48 -4.69 13.56 -18.75 -0.25 -4.95 16 30 N -0.49 -5.77 9.87 -9.59 -0.09 -5.87 16 31 H 0.07 0.53 7.94 -51.93 -0.41 0.12 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.52 7.86 -51.93 -0.41 0.11 16 36 H 0.15 1.62 7.62 -52.49 -0.40 1.22 16 37 H 0.40 5.25 6.74 -40.82 -0.28 4.97 16 38 H 0.09 1.57 4.96 -51.93 -0.26 1.31 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.75 7.99 -51.93 -0.41 1.34 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.91 7.04 -51.93 -0.37 0.54 16 43 H 0.06 1.01 7.03 -51.93 -0.36 0.64 16 44 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 45 H 0.05 0.91 8.14 -51.94 -0.42 0.48 16 46 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 47 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 48 H 0.15 1.41 6.53 -52.49 -0.34 1.07 16 49 H 0.40 1.88 9.06 45.56 0.41 2.29 16 LS Contribution 387.40 15.07 5.84 5.84 Total: -1.00 -31.01 387.40 -9.43 -40.44 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.51 Total: 8.92 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -3.35 Total: -1.76 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.21 Total: -55.10 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.17 Total: -14.50 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.01 -9.43 -40.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021326607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.599 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds