Wall clock time and date at job start Wed Apr 1 2020 04:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47493 * 2 1 4 4 C 1.38358 * 120.26866 * 270.02086 * 3 2 1 5 5 N 1.31874 * 121.18746 * 179.97438 * 4 3 2 6 6 C 1.32247 * 121.79831 * 359.66204 * 5 4 3 7 7 O 1.35426 * 119.80222 * 180.31248 * 6 5 4 8 8 C 1.40278 * 120.39713 * 0.62071 * 6 5 4 9 9 C 1.47525 * 120.59584 * 179.68193 * 8 6 5 10 10 O 1.21585 * 120.00398 * 305.72057 * 9 8 6 11 11 N 1.34783 * 119.99759 * 125.71452 * 9 8 6 12 12 C 1.46890 * 120.45921 * 174.23227 * 11 9 8 13 13 C 1.53360 * 108.73562 * 124.35082 * 12 11 9 14 14 C 1.52556 * 109.13000 * 52.25799 * 13 12 11 15 15 C 1.52966 * 114.05940 * 75.53986 * 14 13 12 16 16 N 1.47165 * 87.85116 * 139.44149 * 15 14 13 17 17 C 1.36938 * 135.99781 * 153.07880 * 16 15 14 18 18 H 1.08003 * 120.00236 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99769 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00190 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99995 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47150 * 59.99867 * 21 19 17 23 23 H 1.48505 * 109.47291 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.47086 * 300.00096 * 21 19 17 25 25 C 1.47162 * 87.99734 * 333.33591 * 16 15 14 26 26 C 1.52551 * 113.43160 * 302.66834 * 14 13 12 27 27 C 1.46882 * 120.45895 * 354.21916 * 11 9 8 28 28 C 1.38336 * 120.27290 * 89.99764 * 3 2 1 29 29 H 1.08996 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47381 * 300.00302 * 1 2 3 31 31 H 1.08998 * 109.46920 * 60.00150 * 1 2 3 32 32 H 1.08999 * 109.47132 * 239.99210 * 2 1 3 33 33 H 1.09009 * 109.46924 * 120.00311 * 2 1 3 34 34 H 1.08006 * 119.40839 * 359.97438 * 4 3 2 35 35 H 0.96698 * 113.99541 * 270.31436 * 7 6 5 36 36 H 1.08998 * 109.59458 * 4.57288 * 12 11 9 37 37 H 1.09004 * 109.58894 * 244.12236 * 12 11 9 38 38 H 1.09003 * 109.52723 * 292.35945 * 13 12 11 39 39 H 1.09004 * 109.58258 * 172.18715 * 13 12 11 40 40 H 1.08999 * 113.49325 * 24.69822 * 15 14 13 41 41 H 1.09000 * 113.48894 * 254.18578 * 15 14 13 42 42 H 0.97001 * 119.99989 * 180.02562 * 20 19 17 43 43 H 1.09004 * 113.49096 * 141.41940 * 25 16 15 44 44 H 1.09001 * 113.48700 * 271.91972 * 25 16 15 45 45 H 1.09002 * 109.52567 * 177.21226 * 26 14 13 46 46 H 1.09000 * 109.52888 * 297.42698 * 26 14 13 47 47 H 1.08993 * 109.59653 * 355.42130 * 27 11 9 48 48 H 1.09000 * 109.59176 * 115.86843 * 27 11 9 49 49 H 1.07998 * 120.82025 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2645 2.0784 -1.1950 5 7 2.7036 3.3217 -1.2161 6 6 2.9356 3.9978 -0.1035 7 8 3.3802 5.2752 -0.1724 8 6 2.7299 3.3978 1.1477 9 6 2.9939 4.1456 2.3916 10 8 4.0797 4.6624 2.5716 11 7 2.0314 4.2562 3.3286 12 6 2.3209 4.8883 4.6226 13 6 1.3285 6.0365 4.8429 14 6 -0.0917 5.5138 4.6498 15 6 -0.6111 4.6736 5.8178 16 7 -1.9088 5.3480 5.6536 17 6 -3.2180 5.0412 5.9124 18 1 -3.4731 4.0861 6.3473 19 6 -4.2173 5.9579 5.6157 20 7 -3.9065 7.1216 5.0852 21 14 -6.0033 5.5392 5.9680 22 1 -6.1738 5.2801 7.4202 23 1 -6.8676 6.6773 5.5639 24 1 -6.3885 4.3276 5.2004 25 6 -1.1827 6.4940 5.0833 26 6 -0.3261 4.8864 3.2792 27 6 0.6784 3.7465 3.0699 28 6 2.2649 2.0782 1.1947 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.0828 1.5643 -2.1273 35 1 4.3436 5.3555 -0.1947 36 1 3.3381 5.2799 4.6186 37 1 2.2129 4.1535 5.4205 38 1 1.5253 6.8313 4.1234 39 1 1.4390 6.4258 5.8551 40 1 -0.1219 4.8977 6.7657 41 1 -0.6463 3.6056 5.6028 42 1 -4.6048 7.7623 4.8782 43 1 -1.7010 6.9645 4.2477 44 1 -0.8487 7.2126 5.8317 45 1 -1.3409 4.4918 3.2279 46 1 -0.1877 5.6408 2.5047 47 1 0.6135 3.3863 2.0432 48 1 0.4563 2.9325 3.7598 49 1 2.0904 1.5862 2.1401 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035830928.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:25 Heat of formation + Delta-G solvation = 17.894539 kcal Electronic energy + Delta-G solvation = -31237.131832 eV Core-core repulsion = 27166.372496 eV Total energy + Delta-G solvation = -4070.759336 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.26579 -39.98168 -38.64981 -37.58424 -35.79302 -34.56248 -33.10928 -32.31463 -30.87584 -30.37340 -29.38175 -27.01578 -25.29012 -24.76673 -24.39457 -23.47247 -23.22551 -22.15817 -21.16474 -19.78479 -18.98322 -17.93314 -17.52098 -16.75156 -16.67674 -16.30472 -15.96941 -15.25363 -14.90008 -14.87757 -14.61993 -14.30560 -14.08863 -13.82671 -13.75121 -13.69667 -13.59463 -13.29132 -12.94428 -12.67620 -12.41234 -12.24781 -12.16294 -12.13372 -11.72833 -11.67041 -11.38130 -11.09583 -11.05576 -10.87815 -10.83592 -10.48357 -10.34384 -10.31589 -9.93390 -9.73245 -9.62747 -9.56489 -9.22031 -9.05738 -8.80724 -8.47807 -6.87475 -5.77082 -3.09362 0.43830 0.78508 2.51669 2.92451 3.19735 3.37757 3.42022 3.43731 3.50258 4.14486 4.31303 4.41387 4.44659 4.51754 4.66847 4.96014 4.96144 4.99816 5.03866 5.08790 5.17302 5.31185 5.31618 5.38677 5.45754 5.47312 5.52899 5.59130 5.60888 5.62674 5.80069 5.84248 5.87318 5.90537 5.97191 6.09542 6.15214 6.26587 6.34238 6.47665 6.57825 6.60623 6.79242 6.81413 7.22078 7.24775 7.34738 7.36440 7.56465 7.56842 7.97318 8.05251 9.03090 9.70000 10.65048 11.40152 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011869 B = 0.003156 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.592061 B = 8869.240390 C =10133.203673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.077 4.077 3 C -0.149 4.149 4 C 0.143 3.857 5 N -0.500 5.500 6 C 0.352 3.648 7 O -0.472 6.472 8 C -0.185 4.185 9 C 0.572 3.428 10 O -0.539 6.539 11 N -0.595 5.595 12 C 0.116 3.884 13 C -0.114 4.114 14 C -0.115 4.115 15 C 0.128 3.872 16 N -0.608 5.608 17 C -0.219 4.219 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.919 5.919 21 Si 0.910 3.090 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.167 3.833 26 C -0.093 4.093 27 C 0.106 3.894 28 C -0.028 4.028 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.163 0.837 35 H 0.407 0.593 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.035 0.965 42 H 0.254 0.746 43 H 0.070 0.930 44 H 0.024 0.976 45 H 0.089 0.911 46 H 0.061 0.939 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.779 -13.276 -10.192 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.115 4.115 3 C -0.151 4.151 4 C -0.015 4.015 5 N -0.218 5.218 6 C 0.172 3.828 7 O -0.280 6.280 8 C -0.192 4.192 9 C 0.359 3.641 10 O -0.418 6.418 11 N -0.326 5.326 12 C -0.006 4.006 13 C -0.153 4.153 14 C -0.117 4.117 15 C 0.001 3.999 16 N -0.333 5.333 17 C -0.346 4.346 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.566 5.566 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.041 3.959 26 C -0.131 4.131 27 C -0.016 4.016 28 C -0.054 4.054 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.180 0.820 35 H 0.267 0.733 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.042 0.958 45 H 0.108 0.892 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.091 0.909 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 14.542 -12.301 -10.816 21.904 hybrid contribution -0.819 -0.447 1.127 1.463 sum 13.724 -12.747 -9.689 21.088 Atomic orbital electron populations 1.21799 0.94033 1.02272 1.02770 1.20469 0.96587 0.90975 1.03494 1.20863 1.02073 0.98632 0.93557 1.22607 0.92343 0.88714 0.97870 1.67293 1.14518 1.08718 1.31254 1.19054 0.92967 0.84427 0.86305 1.84688 1.28388 1.19471 1.95436 1.21040 1.07280 0.96083 0.94772 1.17834 0.84245 0.79683 0.82339 1.90754 1.24325 1.47938 1.78741 1.48033 1.10697 1.58294 1.15625 1.21679 1.00290 0.95468 0.83160 1.21733 0.94272 0.97155 1.02143 1.22080 0.93773 1.00581 0.95229 1.22393 0.87468 0.95632 0.94364 1.45553 0.99568 1.15463 1.72738 1.18860 0.79816 1.00123 1.35793 0.90335 1.24769 0.97837 0.96170 1.01537 1.69818 1.31700 1.07257 1.47786 0.86234 0.84614 0.77135 0.77960 1.21239 1.21566 1.21098 1.22031 0.87420 0.90131 0.96321 1.21403 0.99141 0.96638 0.95960 1.21969 0.80898 0.97507 1.01271 1.21584 0.92518 0.92172 0.99172 0.91935 0.92110 0.92299 0.90393 0.90539 0.81952 0.73322 0.89263 0.91222 0.91663 0.90616 0.95196 0.94647 0.93615 0.91199 0.95814 0.89247 0.92025 0.90409 0.90940 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.08 -0.43 6.08 -27.89 -0.17 -0.60 16 3 C -0.15 -1.22 5.14 -104.54 -0.54 -1.76 16 4 C 0.14 1.29 10.84 -17.49 -0.19 1.10 16 5 N -0.50 -6.07 10.37 -12.98 -0.13 -6.20 16 6 C 0.35 4.58 7.76 -16.61 -0.13 4.46 16 7 O -0.47 -6.19 12.78 -20.50 -0.26 -6.45 16 8 C -0.19 -2.30 4.63 -104.69 -0.48 -2.78 16 9 C 0.57 8.22 6.84 -12.47 -0.09 8.13 16 10 O -0.54 -9.00 16.18 2.76 0.04 -8.95 16 11 N -0.59 -8.11 2.94 -173.86 -0.51 -8.62 16 12 C 0.12 1.55 6.35 -3.64 -0.02 1.53 16 13 C -0.11 -1.71 5.30 -26.77 -0.14 -1.85 16 14 C -0.12 -2.04 0.84 -155.02 -0.13 -2.17 16 15 C 0.13 2.48 7.63 -8.21 -0.06 2.42 16 16 N -0.61 -15.09 3.55 -184.68 -0.66 -15.75 16 17 C -0.22 -6.00 10.74 -15.06 -0.16 -6.16 16 18 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 20 N -0.92 -27.06 11.52 55.49 0.64 -26.42 16 21 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.17 3.84 6.54 -8.23 -0.05 3.78 16 26 C -0.09 -1.55 5.27 -26.77 -0.14 -1.69 16 27 C 0.11 1.39 5.56 -3.65 -0.02 1.37 16 28 C -0.03 -0.27 7.56 -38.89 -0.29 -0.57 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.32 8.09 -51.93 -0.42 -0.10 16 33 H 0.08 0.38 8.09 -51.92 -0.42 -0.04 16 34 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.41 3.69 9.06 45.56 0.41 4.10 16 36 H 0.09 1.22 6.97 -51.93 -0.36 0.85 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 40 H 0.03 0.57 8.06 -51.93 -0.42 0.16 16 41 H 0.04 0.65 7.53 -51.93 -0.39 0.26 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.07 1.81 7.12 -51.93 -0.37 1.44 16 44 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 45 H 0.09 1.69 7.95 -51.93 -0.41 1.28 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.08 0.95 5.27 -51.93 -0.27 0.67 16 48 H 0.07 0.88 7.60 -51.93 -0.39 0.48 16 49 H 0.14 1.16 7.81 -52.49 -0.41 0.75 16 LS Contribution 393.46 15.07 5.93 5.93 Total: -1.00 -34.07 393.46 -9.13 -43.20 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.80 Total: 2.05 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -2.35 Total: 4.38 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.66 Total: -57.00 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.22 Total: -15.40 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.07 -9.13 -43.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035830928.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.094 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds