Wall clock time and date at job start Wed Apr 1 2020 04:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46784 * 2 1 4 4 C 1.35312 * 126.66652 * 90.00229 * 3 2 1 5 5 C 1.42264 * 103.92257 * 180.02562 * 4 3 2 6 6 C 1.48331 * 126.93990 * 179.97438 * 5 4 3 7 7 O 1.21497 * 119.99908 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00410 * 179.97438 * 6 5 4 9 9 C 1.49632 * 125.94895 * 180.02562 * 8 6 5 10 10 C 1.51524 * 102.65543 * 204.52891 * 9 8 6 11 11 H 1.09002 * 109.78203 * 71.68830 * 10 9 8 12 12 C 1.56041 * 99.08207 * 316.74423 * 10 9 8 13 13 H 1.09000 * 105.57703 * 296.15575 * 12 10 9 14 14 C 1.49370 * 125.94146 * 359.70293 * 8 6 5 15 15 C 1.50246 * 106.40405 * 182.80793 * 12 10 9 16 16 H 1.08997 * 114.84494 * 210.40921 * 15 12 10 17 17 C 1.56842 * 102.29444 * 85.39843 * 15 12 10 18 18 C 1.54016 * 106.11084 * 325.09964 * 17 15 12 19 19 C 1.51618 * 122.77853 * 202.92605 * 10 9 8 20 20 H 1.09006 * 113.34185 * 319.68300 * 19 10 9 21 21 C 1.56564 * 102.45304 * 195.83145 * 19 10 9 22 22 N 1.48568 * 104.59685 * 322.11747 * 21 19 10 23 23 C 1.36934 * 122.46551 * 145.11435 * 22 21 19 24 24 H 1.07999 * 119.99998 * 200.98395 * 23 22 21 25 25 C 1.38818 * 120.00429 * 20.98681 * 23 22 21 26 26 N 1.31627 * 119.99245 * 10.52901 * 25 23 22 27 27 Si 1.86794 * 120.00289 * 190.53377 * 25 23 22 28 28 H 1.48506 * 109.47177 * 59.99850 * 27 25 23 29 29 H 1.48504 * 109.47184 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47279 * 299.99889 * 27 25 23 31 31 N 1.30984 * 106.12516 * 0.26049 * 5 4 3 32 32 O 1.20906 * 111.43827 * 359.53539 * 31 5 4 33 33 H 1.09009 * 109.47111 * 60.00043 * 1 2 3 34 34 H 1.08999 * 109.47080 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.47448 * 300.00344 * 1 2 3 36 36 H 1.09000 * 109.46941 * 240.00232 * 2 1 3 37 37 H 1.08996 * 109.46854 * 119.99840 * 2 1 3 38 38 H 1.08001 * 128.03940 * 0.03410 * 4 3 2 39 39 H 1.09001 * 110.77219 * 322.81332 * 9 8 6 40 40 H 1.08992 * 110.77444 * 86.04372 * 9 8 6 41 41 H 1.08998 * 110.40359 * 304.39440 * 14 8 6 42 42 H 1.08997 * 110.40773 * 66.82143 * 14 8 6 43 43 H 1.08997 * 110.11953 * 205.95528 * 17 15 12 44 44 H 1.08995 * 110.12141 * 84.24870 * 17 15 12 45 45 H 1.09001 * 109.45906 * 203.30091 * 18 17 15 46 46 H 1.09001 * 109.45461 * 83.33579 * 18 17 15 47 47 H 1.08995 * 110.40179 * 80.88189 * 21 19 10 48 48 H 1.08995 * 110.40044 * 203.34896 * 21 19 10 49 49 H 0.97001 * 119.99437 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3016 2.1827 1.0854 5 6 2.7382 3.4199 0.5354 6 6 3.1643 4.6274 1.2841 7 8 3.1624 4.6210 2.4990 8 7 3.5545 5.7314 0.6168 9 6 4.0086 7.0165 1.2342 10 6 3.7157 8.0294 0.1460 11 1 2.6393 8.1786 0.0609 12 6 4.2363 7.2252 -1.0857 13 1 5.3061 7.0972 -0.9207 14 6 3.6153 5.8827 -0.8680 15 6 4.0835 8.1276 -2.2771 16 1 3.8984 7.6136 -3.2203 17 6 5.4088 8.9652 -2.2339 18 6 5.7385 9.1668 -0.7430 19 6 4.4274 9.3650 0.0546 20 1 4.5801 9.8403 1.0237 21 6 3.5093 10.1705 -0.9249 22 7 3.0675 9.1709 -1.9313 23 6 1.8226 9.2021 -2.5008 24 1 1.4117 8.3099 -2.9499 25 6 1.0886 10.3803 -2.5010 26 7 1.6600 11.5116 -2.1456 27 14 -0.7099 10.3603 -3.0054 28 1 -1.4692 9.4648 -2.0960 29 1 -1.2632 11.7358 -2.9204 30 1 -0.8273 9.8644 -4.4002 31 7 2.6822 3.2796 -0.7657 32 8 2.2984 2.1756 -1.0750 33 1 -0.3634 0.5139 -0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3634 0.5139 0.8899 36 1 1.8933 -0.5138 -0.8900 37 1 1.8932 -0.5138 0.8900 38 1 2.2072 1.9139 2.1271 39 1 3.4334 7.2379 2.1332 40 1 5.0747 6.9825 1.4579 41 1 4.2371 5.1010 -1.3045 42 1 2.6126 5.8544 -1.2944 43 1 5.2586 9.9300 -2.7183 44 1 6.2139 8.4189 -2.7253 45 1 6.3709 10.0470 -0.6267 46 1 6.2641 8.2897 -0.3655 47 1 2.6504 10.5782 -0.3919 48 1 4.0745 10.9691 -1.4052 49 1 1.1472 12.3350 -2.1461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087405670.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:14 Heat of formation + Delta-G solvation = 81.010513 kcal Electronic energy + Delta-G solvation = -31635.999923 eV Core-core repulsion = 27567.977501 eV Total energy + Delta-G solvation = -4068.022422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -46.18955 -42.52625 -40.38937 -37.50688 -35.85249 -35.17757 -34.86224 -32.67514 -31.79198 -31.63241 -31.04311 -29.01998 -27.19842 -26.51491 -25.03104 -24.56099 -23.57784 -23.20849 -22.29701 -21.81309 -20.27804 -19.12605 -18.91621 -18.52488 -18.34453 -17.99348 -17.36361 -16.85487 -16.31149 -16.13034 -16.04656 -15.89463 -15.40343 -15.16063 -14.64541 -14.47703 -14.36658 -14.22482 -13.98420 -13.78130 -13.50404 -13.24107 -13.05264 -12.92017 -12.83068 -12.62576 -12.44649 -12.38418 -12.37413 -12.26588 -12.18126 -11.98791 -11.86441 -11.79735 -11.58734 -11.49141 -11.28235 -10.71434 -10.61636 -10.48517 -10.45846 -9.90949 -8.70913 -7.84176 -5.21283 0.00862 0.62265 1.41971 1.43859 1.49588 1.50172 1.94578 2.02135 2.48625 2.71452 3.20474 3.32941 3.37955 3.44363 3.77664 3.85623 3.89044 4.00590 4.12293 4.15108 4.19965 4.27356 4.32407 4.35181 4.43987 4.45953 4.49572 4.60623 4.63193 4.69266 4.79159 4.84128 4.88502 4.91954 4.97105 5.01669 5.05989 5.07750 5.14183 5.19106 5.32978 5.39775 5.41357 5.48148 5.55334 5.64404 5.68912 5.83664 6.17034 6.30631 6.68060 7.02576 7.14158 7.81732 8.42024 9.23690 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011453 B = 0.003447 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.089654 B = 8120.783654 C = 9511.276629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.038 4.038 3 C -0.014 4.014 4 C -0.193 4.193 5 C -0.047 4.047 6 C 0.605 3.395 7 O -0.562 6.562 8 N -0.609 5.609 9 C 0.127 3.873 10 C -0.082 4.082 11 H 0.051 0.949 12 C -0.130 4.130 13 H 0.094 0.906 14 C 0.141 3.859 15 C 0.175 3.825 16 H 0.081 0.919 17 C -0.123 4.123 18 C -0.103 4.103 19 C -0.095 4.095 20 H 0.098 0.902 21 C 0.200 3.800 22 N -0.610 5.610 23 C -0.243 4.243 24 H 0.063 0.937 25 C -0.054 4.054 26 N -0.940 5.940 27 Si 0.958 3.042 28 H -0.288 1.288 29 H -0.294 1.294 30 H -0.277 1.277 31 N -0.343 5.343 32 O 0.126 5.874 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.193 0.807 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.048 0.952 43 H 0.044 0.956 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.029 0.971 48 H 0.010 0.990 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.075 -21.967 4.648 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.076 4.076 3 C -0.077 4.077 4 C -0.216 4.216 5 C -0.204 4.204 6 C 0.392 3.608 7 O -0.441 6.441 8 N -0.342 5.342 9 C 0.007 3.993 10 C -0.102 4.102 11 H 0.069 0.931 12 C -0.151 4.151 13 H 0.112 0.888 14 C 0.020 3.980 15 C 0.069 3.931 16 H 0.099 0.901 17 C -0.162 4.162 18 C -0.140 4.140 19 C -0.115 4.115 20 H 0.116 0.884 21 C 0.075 3.925 22 N -0.335 5.335 23 C -0.374 4.374 24 H 0.081 0.919 25 C -0.248 4.248 26 N -0.588 5.588 27 Si 0.788 3.212 28 H -0.215 1.215 29 H -0.220 1.220 30 H -0.202 1.202 31 N -0.042 5.042 32 O 0.048 5.952 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.141 0.859 38 H 0.210 0.790 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.102 0.898 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.047 0.953 48 H 0.028 0.972 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.254 -20.970 4.312 22.304 hybrid contribution -1.620 0.584 0.344 1.756 sum 4.634 -20.386 4.656 21.419 Atomic orbital electron populations 1.21836 0.93159 1.03979 1.02144 1.20436 0.96656 0.83378 1.07127 1.25260 1.00196 0.98242 0.84051 1.22631 1.05509 0.90711 1.02716 1.23394 1.08274 0.98087 0.90695 1.16799 0.77225 0.81082 0.85700 1.90741 1.56801 1.83214 1.13365 1.49710 1.63159 1.12618 1.08718 1.21866 1.00549 0.80988 0.95940 1.21622 1.00259 0.94423 0.93919 0.93088 1.22170 1.01679 0.92928 0.98309 0.88808 1.21124 1.00808 0.97928 0.78138 1.21342 0.88701 0.88777 0.94316 0.90067 1.22968 0.96705 0.99579 0.96927 1.22081 0.95834 1.02003 0.94116 1.22374 0.95766 0.94446 0.98893 0.88357 1.21516 0.94155 0.89025 0.87791 1.45670 1.11307 1.30512 1.45977 1.19381 0.92868 0.93958 1.31162 0.91910 1.25547 1.01867 0.95037 1.02377 1.70111 1.35758 0.97917 1.54979 0.85470 0.81492 0.76006 0.78263 1.21532 1.22046 1.20245 1.74334 1.14460 0.99863 1.15541 1.84772 1.59357 1.16738 1.34331 0.93065 0.88906 0.92799 0.87094 0.85858 0.78953 0.91148 0.88731 0.89566 0.93330 0.93708 0.89805 0.91313 0.90107 0.95257 0.97200 0.94477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.89 71.98 0.71 -0.53 16 2 C -0.04 -0.29 6.50 29.85 0.19 -0.10 16 3 C -0.01 -0.25 6.73 25.01 0.17 -0.08 16 4 C -0.19 -4.28 10.92 22.59 0.25 -4.03 16 5 C -0.05 -1.41 7.04 42.96 0.30 -1.10 16 6 C 0.60 21.03 7.90 86.93 0.69 21.72 16 7 O -0.56 -21.80 17.28 -3.71 -0.06 -21.87 16 8 N -0.61 -20.42 3.43 -818.09 -2.81 -23.23 16 9 C 0.13 3.99 6.70 85.29 0.57 4.56 16 10 C -0.08 -2.91 2.30 -10.68 -0.02 -2.93 16 11 H 0.05 2.31 7.09 -2.39 -0.02 2.29 16 12 C -0.13 -4.22 2.22 -11.75 -0.03 -4.25 16 13 H 0.09 2.59 5.12 -2.39 -0.01 2.58 16 14 C 0.14 4.59 5.48 84.70 0.46 5.05 16 15 C 0.17 6.59 4.70 44.83 0.21 6.80 16 16 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 17 C -0.12 -3.99 5.54 32.28 0.18 -3.81 16 18 C -0.10 -2.93 5.30 31.53 0.17 -2.77 16 19 C -0.09 -3.26 4.31 -9.41 -0.04 -3.30 16 20 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 21 C 0.20 9.32 3.98 87.22 0.35 9.67 16 22 N -0.61 -29.35 1.95 -655.54 -1.28 -30.63 16 23 C -0.24 -13.37 9.99 84.04 0.84 -12.53 16 24 H 0.06 3.42 7.85 -2.91 -0.02 3.40 16 25 C -0.05 -3.05 5.22 84.86 0.44 -2.61 16 26 N -0.94 -55.77 10.84 21.65 0.23 -55.54 16 27 Si 0.96 46.41 29.57 68.60 2.03 48.44 16 28 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 29 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 30 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 31 N -0.34 -9.88 9.82 -49.52 -0.49 -10.37 16 32 O 0.13 2.91 11.18 71.87 0.80 3.71 16 33 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.19 3.53 8.06 -2.91 -0.02 3.51 16 39 H 0.07 2.32 8.10 -2.39 -0.02 2.30 16 40 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.09 2.53 7.54 -2.39 -0.02 2.51 16 42 H 0.05 1.82 8.05 -2.39 -0.02 1.80 16 43 H 0.04 1.73 7.15 -2.39 -0.02 1.72 16 44 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.08 1.90 6.49 -2.39 -0.02 1.88 16 47 H 0.03 1.59 6.82 -2.39 -0.02 1.57 16 48 H 0.01 0.51 7.11 -2.39 -0.02 0.49 16 49 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -71.23 379.18 4.83 -66.40 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.96 Total: 13.31 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 5.44 Total: 9.76 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -4.34 Total: -119.76 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.74 Total: -18.15 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -71.23 4.83 -66.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087405670.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.411 kcal (2) G-P(sol) polarization free energy of solvation -71.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds