Wall clock time and date at job start Wed Apr 1 2020 05:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47159 * 2 1 4 4 C 1.50704 * 109.47025 * 179.97438 * 3 2 1 5 5 C 1.38023 * 119.51090 * 125.25707 * 4 3 2 6 6 C 1.39924 * 119.13249 * 180.22574 * 5 4 3 7 7 C 1.48157 * 120.89371 * 179.79712 * 6 5 4 8 8 O 1.21512 * 120.00024 * 359.72213 * 7 6 5 9 9 N 1.34779 * 119.99723 * 179.72008 * 7 6 5 10 10 C 1.46507 * 119.99455 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.68552 * 32.01432 * 10 9 7 12 12 C 1.55869 * 111.60216 * 269.01446 * 10 9 7 13 13 C 1.55839 * 103.53277 * 242.19581 * 12 10 9 14 14 H 1.09000 * 115.56427 * 158.21004 * 13 12 10 15 15 C 1.55845 * 105.74355 * 287.38712 * 13 12 10 16 16 C 1.55874 * 102.97173 * 71.13195 * 15 13 12 17 17 C 1.55846 * 103.52921 * 0.88071 * 16 15 13 18 18 H 1.09002 * 115.56047 * 158.20752 * 17 16 15 19 19 N 1.50240 * 101.04996 * 32.33542 * 17 16 15 20 20 C 1.36932 * 130.83691 * 126.05014 * 19 17 16 21 21 H 1.07995 * 120.00197 * 0.02562 * 20 19 17 22 22 C 1.38820 * 119.99905 * 179.97438 * 20 19 17 23 23 N 1.31619 * 119.99507 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00249 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46750 * 90.00128 * 24 22 20 26 26 H 1.48496 * 109.47015 * 210.00297 * 24 22 20 27 27 H 1.48507 * 109.47070 * 330.00342 * 24 22 20 28 28 C 1.39618 * 118.21140 * 359.52499 * 6 5 4 29 29 C 1.38845 * 118.95203 * 0.25070 * 28 6 5 30 30 O 1.35688 * 119.62108 * 179.97438 * 29 28 6 31 31 N 1.31874 * 119.51337 * 304.99935 * 4 3 2 32 32 H 1.09000 * 109.47091 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47043 * 299.99922 * 1 2 3 34 34 H 1.09001 * 109.46925 * 60.00217 * 1 2 3 35 35 H 1.09007 * 109.47270 * 240.00510 * 2 1 3 36 36 H 1.08995 * 109.47024 * 120.00205 * 2 1 3 37 37 H 1.08998 * 109.46605 * 59.99883 * 3 2 1 38 38 H 1.09000 * 109.46617 * 300.00060 * 3 2 1 39 39 H 1.08000 * 120.43637 * 0.02915 * 5 4 3 40 40 H 0.97001 * 120.00656 * 359.97438 * 9 7 6 41 41 H 1.08997 * 111.10185 * 123.42738 * 12 10 9 42 42 H 1.09005 * 110.20850 * 0.53213 * 12 10 9 43 43 H 1.09001 * 110.63096 * 190.49954 * 15 13 12 44 44 H 1.09003 * 110.62502 * 313.52278 * 15 13 12 45 45 H 1.09006 * 111.10163 * 242.11859 * 16 15 13 46 46 H 1.09001 * 110.07013 * 119.15623 * 16 15 13 47 47 H 0.97002 * 119.99721 * 179.97438 * 23 22 20 48 48 H 1.08002 * 120.51819 * 180.22848 * 28 6 5 49 49 H 0.96705 * 113.99755 * 89.99971 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.2274 2.1357 -0.9800 6 6 5.6266 2.1264 -0.9747 7 6 6.3961 2.8534 -2.0112 8 8 5.8124 3.4645 -2.8844 9 7 7.7436 2.8370 -1.9855 10 6 8.5045 3.5563 -3.0102 11 1 7.9650 4.4453 -3.3372 12 6 8.8252 2.6443 -4.2328 13 6 10.3825 2.5881 -4.2473 14 1 10.8176 1.7360 -4.7695 15 6 10.8516 3.9900 -4.7406 16 6 10.5181 4.9159 -3.5318 17 6 9.9186 3.9373 -2.4774 18 1 9.9551 4.2801 -1.4434 19 7 10.6877 2.6824 -2.7792 20 6 11.4361 1.8736 -1.9664 21 1 11.5398 2.1093 -0.9176 22 6 12.0605 0.7499 -2.4902 23 7 11.9336 0.4623 -3.7684 24 14 13.0820 -0.3532 -1.3816 25 1 12.2157 -1.4108 -0.8018 26 1 14.1682 -0.9828 -2.1748 27 1 13.6742 0.4570 -0.2869 28 6 6.2780 1.4184 0.0371 29 6 5.5171 0.7519 0.9881 30 8 6.1361 0.0592 1.9771 31 7 4.1963 0.7844 0.9411 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5138 -0.8901 36 1 1.8933 -0.5138 0.8899 37 1 1.6767 1.9563 0.8900 38 1 1.6767 1.9563 -0.8900 39 1 3.6869 2.6756 -1.7434 40 1 8.2096 2.3495 -1.2882 41 1 8.4481 3.0808 -5.1576 42 1 8.4065 1.6494 -4.0805 43 1 11.9197 3.9830 -4.9580 44 1 10.2822 4.2989 -5.6172 45 1 9.7876 5.6758 -3.8094 46 1 11.4293 5.3782 -3.1522 47 1 12.3703 -0.3227 -4.1345 48 1 7.3569 1.3894 0.0790 49 1 6.3154 0.5819 2.7707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098001321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:43 Heat of formation + Delta-G solvation = -6.576689 kcal Electronic energy + Delta-G solvation = -30475.105885 eV Core-core repulsion = 26403.285397 eV Total energy + Delta-G solvation = -4071.820488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.94626 -39.66366 -38.38640 -37.44971 -35.09026 -34.01730 -32.76171 -32.38745 -30.81847 -29.14985 -28.87262 -27.88711 -27.13677 -24.70961 -24.11262 -23.05145 -22.00031 -21.15528 -20.03030 -19.83745 -18.98885 -18.52333 -17.18688 -17.10326 -16.95126 -15.83531 -15.79589 -15.47194 -15.03911 -14.87436 -14.72682 -14.47088 -14.08025 -13.95823 -13.81123 -13.57684 -12.94403 -12.91311 -12.50019 -12.24052 -12.09227 -11.91523 -11.88082 -11.66420 -11.41017 -11.32178 -11.17744 -10.98028 -10.94153 -10.91619 -10.63091 -10.41656 -10.18427 -10.12983 -9.98782 -9.94452 -9.60657 -9.32581 -9.23518 -9.02445 -8.99577 -8.59408 -7.00900 -5.79776 -3.19411 0.58073 0.78796 2.84633 3.27495 3.33357 3.36318 3.38235 3.40702 3.66206 4.22849 4.35981 4.53534 4.73701 4.82386 4.83419 4.92788 4.97872 5.06641 5.19224 5.29810 5.34600 5.39986 5.52319 5.54742 5.56554 5.61271 5.66905 5.81438 5.82983 5.88830 5.95472 5.99550 6.05108 6.09530 6.11230 6.20709 6.25550 6.36397 6.41778 6.52319 6.66474 6.75719 6.88525 7.00890 7.25791 7.29013 7.40892 7.69536 7.73066 7.79670 8.11497 8.37012 9.01465 9.65101 10.45490 11.29016 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012059 B = 0.002989 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.268529 B = 9365.090029 C =10872.197865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.068 4.068 4 C 0.148 3.852 5 C -0.126 4.126 6 C -0.062 4.062 7 C 0.552 3.448 8 O -0.539 6.539 9 N -0.692 5.692 10 C 0.126 3.874 11 H 0.082 0.918 12 C -0.142 4.142 13 C 0.153 3.847 14 H 0.153 0.847 15 C -0.137 4.137 16 C -0.127 4.127 17 C 0.125 3.875 18 H 0.087 0.913 19 N -0.591 5.591 20 C -0.218 4.218 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.918 5.918 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.282 1.282 28 C -0.158 4.158 29 C 0.313 3.687 30 O -0.477 6.477 31 N -0.488 5.488 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.150 0.850 40 H 0.404 0.596 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.255 0.745 48 H 0.149 0.851 49 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.960 4.373 7.280 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.106 4.106 4 C 0.010 3.990 5 C -0.147 4.147 6 C -0.073 4.073 7 C 0.337 3.663 8 O -0.417 6.417 9 N -0.341 5.341 10 C 0.020 3.980 11 H 0.100 0.900 12 C -0.183 4.183 13 C 0.046 3.954 14 H 0.170 0.830 15 C -0.177 4.177 16 C -0.167 4.167 17 C 0.016 3.984 18 H 0.105 0.895 19 N -0.312 5.312 20 C -0.346 4.346 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.745 3.255 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.208 1.208 28 C -0.180 4.180 29 C 0.134 3.866 30 O -0.284 6.284 31 N -0.208 5.208 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.168 0.832 40 H 0.240 0.760 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.166 0.834 49 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -16.543 3.621 6.981 18.317 hybrid contribution 1.442 -0.118 0.679 1.598 sum -15.101 3.504 7.660 17.291 Atomic orbital electron populations 1.21779 0.95563 1.01789 1.01777 1.21456 0.95580 0.95496 1.03075 1.20624 0.87672 0.98725 1.03551 1.20949 0.96621 0.91896 0.89526 1.22114 0.93255 0.99796 0.99542 1.20423 0.94375 0.97325 0.95144 1.18078 0.82742 0.80945 0.84502 1.90744 1.69793 1.43969 1.37204 1.45917 1.04993 1.52073 1.31123 1.22840 0.92428 0.94332 0.88393 0.89956 1.23627 1.00449 0.98701 0.95501 1.23745 0.89632 0.96455 0.85532 0.83044 1.23216 1.00367 0.98356 0.95734 1.23042 0.99518 0.96918 0.97236 1.23155 0.89435 0.89284 0.96502 0.89516 1.46550 1.55452 1.23854 1.05353 1.18985 1.22228 1.02403 0.90949 0.90402 1.24707 1.00943 0.98606 0.96178 1.69458 1.47706 1.28181 1.11211 0.86081 0.79652 0.80539 0.79245 1.21593 1.21662 1.20775 1.22409 1.02229 0.97385 0.95983 1.18928 0.86630 0.90666 0.90390 1.84835 1.76975 1.39185 1.27418 1.66750 1.09946 1.18151 1.25966 0.92629 0.92658 0.92684 0.92029 0.90788 0.89717 0.89801 0.83183 0.76015 0.92550 0.92281 0.92378 0.93377 0.92876 0.92409 0.93476 0.83370 0.74168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -1.03 5.79 -26.73 -0.15 -1.19 16 3 C -0.07 -0.59 5.61 -27.88 -0.16 -0.74 16 4 C 0.15 1.73 6.17 -82.65 -0.51 1.22 16 5 C -0.13 -1.60 9.27 -39.03 -0.36 -1.96 16 6 C -0.06 -0.87 5.91 -104.68 -0.62 -1.49 16 7 C 0.55 9.17 7.80 -12.19 -0.10 9.07 16 8 O -0.54 -10.27 16.09 5.35 0.09 -10.19 16 9 N -0.69 -11.59 5.10 -51.70 -0.26 -11.85 16 10 C 0.13 2.27 2.84 -64.87 -0.18 2.09 16 11 H 0.08 1.47 7.26 -51.93 -0.38 1.10 16 12 C -0.14 -2.84 6.30 -23.68 -0.15 -2.99 16 13 C 0.15 3.38 4.67 -62.80 -0.29 3.09 16 14 H 0.15 3.88 5.52 -51.93 -0.29 3.60 16 15 C -0.14 -2.63 6.53 -23.68 -0.15 -2.79 16 16 C -0.13 -2.22 6.48 -23.68 -0.15 -2.37 16 17 C 0.12 2.33 5.01 -62.80 -0.31 2.02 16 18 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 19 N -0.59 -13.53 2.97 -145.81 -0.43 -13.96 16 20 C -0.22 -5.53 10.59 -15.06 -0.16 -5.69 16 21 H 0.08 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -25.32 10.46 55.49 0.58 -24.74 16 24 Si 0.91 21.10 29.55 -169.99 -5.02 16.08 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 28 C -0.16 -2.07 9.55 -38.84 -0.37 -2.44 16 29 C 0.31 4.04 7.74 -17.17 -0.13 3.91 16 30 O -0.48 -5.48 13.56 -18.77 -0.25 -5.73 16 31 N -0.49 -6.33 9.87 -9.60 -0.09 -6.43 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.74 7.94 -51.93 -0.41 0.32 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.60 7.86 -51.93 -0.41 0.19 16 39 H 0.15 1.76 7.63 -52.49 -0.40 1.36 16 40 H 0.40 6.53 6.80 -40.82 -0.28 6.26 16 41 H 0.06 1.04 7.85 -51.93 -0.41 0.64 16 42 H 0.06 1.28 8.01 -51.93 -0.42 0.87 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 45 H 0.05 0.81 7.85 -51.93 -0.41 0.40 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 48 H 0.15 1.83 6.53 -52.49 -0.34 1.49 16 49 H 0.40 2.47 9.06 45.56 0.41 2.88 16 LS Contribution 396.03 15.07 5.97 5.97 Total: -1.00 -31.03 396.03 -9.63 -40.66 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -6.66 Total: 11.43 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -3.54 Total: -1.25 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.21 Total: -56.97 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.17 Total: -15.92 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.03 -9.63 -40.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098001321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.083 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds