Wall clock time and date at job start Wed Apr 1 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47055 * 2 1 4 4 C 1.38362 * 119.85008 * 90.00274 * 3 2 1 5 5 C 1.37960 * 120.14292 * 180.02562 * 4 3 2 6 6 C 1.39578 * 119.85199 * 359.97421 * 5 4 3 7 7 C 1.47846 * 120.13948 * 179.97438 * 6 5 4 8 8 O 1.21550 * 120.00495 * 321.27616 * 7 6 5 9 9 N 1.34778 * 119.99847 * 141.00709 * 7 6 5 10 10 C 1.46503 * 119.99736 * 4.80271 * 9 7 6 11 11 C 1.46501 * 120.00363 * 184.80946 * 9 7 6 12 12 C 1.53935 * 113.73299 * 218.76504 * 11 9 7 13 13 N 1.48192 * 86.09934 * 221.95208 * 12 11 9 14 14 C 1.46898 * 111.07026 * 137.51951 * 13 12 11 15 15 C 1.50701 * 109.47182 * 70.56383 * 14 13 12 16 16 O 1.21289 * 119.99894 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00284 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00411 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99472 * 359.97438 * 18 17 15 20 20 C 1.38953 * 120.00267 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99695 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00041 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46927 * 89.99568 * 22 20 18 24 24 H 1.48491 * 109.47444 * 209.99914 * 22 20 18 25 25 H 1.48504 * 109.47343 * 330.00056 * 22 20 18 26 26 C 1.47965 * 90.79725 * 24.59940 * 13 12 11 27 27 C 1.39576 * 119.71421 * 0.25468 * 6 5 4 28 28 C 1.37962 * 119.84789 * 359.51533 * 27 6 5 29 29 H 1.09005 * 109.46878 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47206 * 299.99909 * 1 2 3 31 31 H 1.09001 * 109.47280 * 60.00106 * 1 2 3 32 32 H 1.09004 * 109.46799 * 240.00391 * 2 1 3 33 33 H 1.08998 * 109.46719 * 120.00393 * 2 1 3 34 34 H 1.07999 * 119.93036 * 0.02562 * 4 3 2 35 35 H 1.08001 * 120.07239 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.47239 * 85.47038 * 10 9 7 37 37 H 1.09006 * 109.47010 * 205.46597 * 10 9 7 38 38 H 1.08996 * 109.47626 * 325.46617 * 10 9 7 39 39 H 1.09005 * 112.92957 * 350.32488 * 11 9 7 40 40 H 1.09003 * 113.76060 * 336.23150 * 12 11 9 41 41 H 1.08999 * 113.75963 * 107.60142 * 12 11 9 42 42 H 1.08995 * 109.47097 * 190.56507 * 14 13 12 43 43 H 1.09001 * 109.47552 * 310.56875 * 14 13 12 44 44 H 0.97000 * 120.00111 * 0.02562 * 17 15 14 45 45 H 0.96999 * 119.99527 * 179.97438 * 21 20 18 46 46 H 1.08996 * 113.75567 * 221.08098 * 26 13 12 47 47 H 1.09003 * 113.75856 * 89.71955 * 26 13 12 48 48 H 1.07998 * 120.07570 * 179.72356 * 27 6 5 49 49 H 1.08001 * 119.92694 * 180.23189 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2619 2.0701 1.2001 5 6 2.7213 3.3709 1.2071 6 6 2.9549 4.0318 0.0001 7 6 3.4466 5.4261 0.0002 8 8 3.0274 6.2184 0.8212 9 7 4.3637 5.8173 -0.9066 10 6 4.7954 4.8924 -1.9576 11 6 4.9290 7.1672 -0.8413 12 6 5.1418 7.8172 -2.2204 13 7 6.4362 8.2974 -1.6819 14 6 7.5095 8.1460 -2.6734 15 6 7.3068 9.1390 -3.7887 16 8 6.3615 9.8984 -3.7602 17 7 8.1764 9.1839 -4.8174 18 6 7.9923 10.0876 -5.8318 19 1 7.1501 10.7632 -5.8068 20 6 8.8887 10.1335 -6.8926 21 7 9.9131 9.3110 -6.9231 22 14 8.6374 11.3643 -8.2750 23 1 9.3444 12.6284 -7.9470 24 1 9.1812 10.8067 -9.5393 25 1 7.1866 11.6366 -8.4379 26 6 6.4616 7.1910 -0.6998 27 6 2.7166 3.3727 -1.2069 28 6 2.2618 2.0702 -1.1999 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 2.0812 1.5574 2.1333 35 1 2.8997 3.8768 2.1445 36 1 4.1038 4.9491 -2.7981 37 1 5.7967 5.1642 -2.2920 38 1 4.8072 3.8758 -1.5647 39 1 4.4125 7.8100 -0.1284 40 1 5.2440 7.0985 -3.0336 41 1 4.4342 8.6157 -2.4434 42 1 8.4727 8.3269 -2.1965 43 1 7.4892 7.1346 -3.0794 44 1 8.9326 8.5768 -4.8400 45 1 10.5386 9.3429 -7.6639 46 1 6.8067 7.4902 0.2899 47 1 6.9506 6.2888 -1.0672 48 1 2.8911 3.8800 -2.1443 49 1 2.0807 1.5577 -2.1332 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671193468.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:01 Heat of formation + Delta-G solvation = -23.086136 kcal Electronic energy + Delta-G solvation = -29338.677045 eV Core-core repulsion = 25266.140653 eV Total energy + Delta-G solvation = -4072.536391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.03712 -40.89251 -39.78482 -39.15550 -36.34293 -35.89710 -34.93465 -33.31527 -32.10717 -31.50854 -30.34350 -28.22695 -27.43564 -27.07950 -25.90645 -24.65278 -23.63796 -22.50901 -21.38455 -20.92744 -20.24558 -19.89572 -18.55769 -17.98937 -17.84420 -17.01280 -16.74569 -16.67006 -16.50315 -16.31880 -15.79768 -15.67212 -15.43818 -15.05177 -14.87235 -14.71700 -14.39010 -14.23050 -14.13517 -13.93699 -13.69317 -13.63287 -13.52417 -13.32909 -13.21404 -13.18778 -12.88093 -12.65252 -12.43026 -12.22828 -12.14082 -12.12709 -11.96018 -11.83937 -11.65805 -11.51103 -11.02802 -10.35710 -10.02425 -9.95297 -9.82311 -9.78835 -9.63963 -8.47531 -5.95927 -0.08634 0.40931 1.37067 1.41350 1.53476 1.58684 1.78118 2.03765 2.28402 2.75278 2.80212 3.18777 3.22395 3.36426 3.51043 3.70259 3.82979 3.87104 3.98004 4.06012 4.11938 4.21890 4.29144 4.33374 4.38308 4.40630 4.49683 4.52967 4.55068 4.56581 4.63779 4.67456 4.76312 4.81993 4.93780 4.96667 5.01681 5.12724 5.15032 5.27374 5.30148 5.33979 5.40545 5.42282 5.43321 5.64493 5.82962 5.94544 6.03563 6.22957 6.59470 6.96937 7.12223 7.55004 8.11172 8.69732 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019353 B = 0.001862 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.420611 B =15031.358595 C =15855.251203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.058 4.058 4 C -0.127 4.127 5 C -0.076 4.076 6 C -0.153 4.153 7 C 0.557 3.443 8 O -0.581 6.581 9 N -0.595 5.595 10 C 0.061 3.939 11 C 0.122 3.878 12 C 0.014 3.986 13 N -0.478 5.478 14 C 0.027 3.973 15 C 0.439 3.561 16 O -0.620 6.620 17 N -0.572 5.572 18 C -0.333 4.333 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.918 5.918 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.269 1.269 25 H -0.274 1.274 26 C 0.003 3.997 27 C -0.090 4.090 28 C -0.125 4.125 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.146 0.854 35 H 0.122 0.878 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.104 0.896 47 H 0.099 0.901 48 H 0.147 0.853 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.674 -24.987 12.636 30.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.059 4.059 4 C -0.144 4.144 5 C -0.095 4.095 6 C -0.156 4.156 7 C 0.347 3.653 8 O -0.462 6.462 9 N -0.326 5.326 10 C -0.080 4.080 11 C 0.018 3.982 12 C -0.115 4.115 13 N -0.202 5.202 14 C -0.105 4.105 15 C 0.227 3.773 16 O -0.506 6.506 17 N -0.209 5.209 18 C -0.463 4.463 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.559 5.559 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.126 4.126 27 C -0.108 4.108 28 C -0.143 4.143 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.164 0.836 35 H 0.140 0.860 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.122 0.878 47 H 0.116 0.884 48 H 0.165 0.835 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.257 -23.412 13.123 29.505 hybrid contribution 0.487 0.223 -1.065 1.192 sum -11.770 -23.188 12.058 28.664 Atomic orbital electron populations 1.21754 0.94297 1.02552 1.01916 1.20670 0.96361 0.91013 1.04353 1.20458 0.95314 0.97260 0.92826 1.21217 1.00144 0.93893 0.99183 1.21243 0.96422 0.95050 0.96766 1.19772 1.06947 0.92940 0.95972 1.18914 0.78206 0.88219 0.79922 1.90752 1.59122 1.55624 1.40657 1.47834 1.40804 1.13828 1.30126 1.22419 1.01585 0.93925 0.90081 1.22934 0.94171 0.83312 0.97817 1.24218 0.93044 0.98107 0.96152 1.68374 1.01650 1.39613 1.10524 1.22342 0.98137 0.97598 0.92389 1.20729 0.84254 0.87697 0.84659 1.90507 1.33999 1.46172 1.79892 1.41908 1.25508 1.34031 1.19470 1.19632 1.11296 1.14999 1.00369 0.90538 1.25995 0.94852 0.99604 1.00630 1.69661 1.14300 1.38148 1.33797 0.84958 0.78385 0.77918 0.77259 1.19817 1.19358 1.19915 1.24516 0.94977 0.94147 0.98929 1.21792 0.96663 0.95156 0.97169 1.21305 0.99763 0.94223 0.99010 0.91033 0.93063 0.92866 0.89464 0.89775 0.83614 0.86019 0.90666 0.89986 0.88391 0.87452 0.89923 0.91345 0.87065 0.89750 0.76910 0.91270 0.87807 0.88356 0.83550 0.83064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 71.98 0.71 -0.32 16 2 C -0.09 -0.58 6.06 29.85 0.18 -0.40 16 3 C -0.06 -0.66 5.14 -19.81 -0.10 -0.77 16 4 C -0.13 -1.71 9.68 22.23 0.22 -1.50 16 5 C -0.08 -1.42 9.63 22.53 0.22 -1.21 16 6 C -0.15 -3.14 5.23 -20.09 -0.11 -3.25 16 7 C 0.56 14.73 7.36 86.79 0.64 15.37 16 8 O -0.58 -20.24 16.38 -3.87 -0.06 -20.30 16 9 N -0.60 -13.55 3.09 -830.26 -2.57 -16.12 16 10 C 0.06 0.93 7.56 127.77 0.97 1.89 16 11 C 0.12 3.30 4.41 46.56 0.21 3.50 16 12 C 0.01 0.45 6.19 86.36 0.53 0.99 16 13 N -0.48 -15.67 5.95 -912.23 -5.42 -21.09 16 14 C 0.03 0.90 5.31 85.56 0.45 1.36 16 15 C 0.44 20.77 7.59 87.66 0.67 21.43 16 16 O -0.62 -34.62 15.13 -3.06 -0.05 -34.66 16 17 N -0.57 -28.96 5.29 -306.99 -1.62 -30.58 16 18 C -0.33 -18.86 9.68 84.04 0.81 -18.04 16 19 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 20 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 21 N -0.92 -48.82 13.05 21.66 0.28 -48.53 16 22 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 C 0.00 0.08 7.48 86.41 0.65 0.73 16 27 C -0.09 -1.34 7.57 22.53 0.17 -1.17 16 28 C -0.13 -1.45 9.68 22.23 0.22 -1.23 16 29 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.09 0.40 8.08 -2.39 -0.02 0.38 16 33 H 0.08 0.43 8.08 -2.39 -0.02 0.41 16 34 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.12 2.40 8.05 -2.91 -0.02 2.37 16 36 H 0.07 0.99 6.89 -2.39 -0.02 0.97 16 37 H 0.08 1.15 6.18 -2.38 -0.01 1.13 16 38 H 0.10 1.17 5.83 -2.39 -0.01 1.15 16 39 H 0.11 3.41 7.20 -2.38 -0.02 3.39 16 40 H 0.08 2.37 6.38 -2.39 -0.02 2.35 16 41 H 0.07 2.58 8.10 -2.39 -0.02 2.56 16 42 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 43 H 0.08 2.30 7.70 -2.39 -0.02 2.28 16 44 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 45 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 46 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.10 1.84 6.56 -2.39 -0.02 1.82 16 48 H 0.15 1.80 5.31 -2.91 -0.02 1.79 16 49 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -75.66 398.24 -0.27 -75.93 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.24 Total: 33.27 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 6.89 Total: 17.28 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -9.33 Total: -116.32 kcal Atomic # 8 Polarization: -54.85 SS G_CDS: -0.11 Total: -54.96 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -75.66 -0.27 -75.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671193468.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.846 kcal (2) G-P(sol) polarization free energy of solvation -75.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds