Wall clock time and date at job start Wed Apr 1 2020 03:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47327 * 2 1 4 4 N 1.46496 * 109.47418 * 179.97438 * 3 2 1 5 5 C 1.36931 * 120.00214 * 269.99594 * 4 3 2 6 6 H 1.07996 * 120.00135 * 325.75845 * 5 4 3 7 7 C 1.38810 * 120.00327 * 145.75044 * 5 4 3 8 8 N 1.31619 * 120.00348 * 158.39035 * 7 5 4 9 9 Si 1.86801 * 119.99968 * 338.39638 * 7 5 4 10 10 H 1.48502 * 109.47404 * 95.45819 * 9 7 5 11 11 H 1.48500 * 109.47466 * 215.45783 * 9 7 5 12 12 H 1.48496 * 109.47458 * 335.45982 * 9 7 5 13 13 C 1.46505 * 119.99896 * 89.99815 * 4 3 2 14 14 C 1.50694 * 109.47347 * 87.14237 * 13 4 3 15 15 O 1.21288 * 119.99728 * 0.02562 * 14 13 4 16 16 N 1.34771 * 120.00253 * 179.97438 * 14 13 4 17 17 C 1.39922 * 120.00298 * 184.96749 * 16 14 13 18 18 C 1.38947 * 120.03727 * 323.75567 * 17 16 14 19 19 C 1.38133 * 120.07126 * 180.02562 * 18 17 16 20 20 C 1.38179 * 120.14266 * 359.74552 * 19 18 17 21 21 C 1.38907 * 120.06657 * 0.50780 * 20 19 18 22 22 N 1.39924 * 120.03212 * 179.76806 * 21 20 19 23 23 C 1.46763 * 124.35254 * 356.33879 * 22 21 20 24 24 C 1.54482 * 105.47352 * 162.98317 * 23 22 21 25 25 C 1.54636 * 101.76169 * 25.42097 * 24 23 22 26 26 C 1.34418 * 124.34628 * 176.34490 * 22 21 20 27 27 O 1.21289 * 124.94362 * 0.66999 * 26 22 21 28 28 C 1.38727 * 120.03821 * 143.77588 * 17 16 14 29 29 H 1.09001 * 109.47284 * 300.00631 * 1 2 3 30 30 H 1.09006 * 109.47248 * 60.00368 * 1 2 3 31 31 H 1.08994 * 109.47170 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47229 * 239.99745 * 2 1 3 33 33 H 1.09006 * 109.47248 * 119.99632 * 2 1 3 34 34 H 1.08994 * 109.47174 * 59.99711 * 3 2 1 35 35 H 1.09006 * 109.46656 * 299.99994 * 3 2 1 36 36 H 0.96994 * 120.00320 * 180.02562 * 8 7 5 37 37 H 1.09005 * 109.47068 * 327.14187 * 13 4 3 38 38 H 1.08998 * 109.46961 * 207.14338 * 13 4 3 39 39 H 0.97004 * 119.99993 * 4.97965 * 16 14 13 40 40 H 1.07999 * 119.96132 * 359.97438 * 18 17 16 41 41 H 1.08001 * 119.92797 * 180.02562 * 19 18 17 42 42 H 1.08001 * 119.96765 * 180.27383 * 20 19 18 43 43 H 1.09002 * 110.24088 * 43.99198 * 23 22 21 44 44 H 1.08995 * 110.25156 * 281.98684 * 23 22 21 45 45 H 1.08992 * 110.97554 * 267.30387 * 24 23 22 46 46 H 1.08999 * 110.99922 * 143.55013 * 24 23 22 47 47 H 1.09001 * 110.48584 * 216.52093 * 25 24 23 48 48 H 1.09000 * 110.48652 * 93.88016 * 25 24 23 49 49 H 1.08003 * 120.06524 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4428 1.1867 6 1 3.7892 1.9692 2.0407 7 6 5.3967 0.7663 1.2917 8 7 6.2530 1.0910 2.2370 9 14 5.8065 -0.6048 0.0910 10 1 6.6255 -0.0602 -1.0217 11 1 6.5705 -1.6666 0.7940 12 1 4.5496 -1.1777 -0.4540 13 6 4.2380 1.4423 -1.2679 14 6 4.4280 2.8612 -1.7385 15 8 3.9942 3.7821 -1.0790 16 7 5.0808 3.1070 -2.8917 17 6 5.3485 4.4252 -3.2768 18 6 4.4255 5.4289 -3.0101 19 6 4.6888 6.7305 -3.3905 20 6 5.8727 7.0397 -4.0325 21 6 6.7973 6.0400 -4.3068 22 7 7.9937 6.3531 -4.9613 23 6 8.3359 7.6873 -5.4682 24 6 9.8632 7.6615 -5.6984 25 6 10.1232 6.1535 -5.9204 26 6 8.9774 5.4705 -5.2067 27 8 8.9485 4.2962 -4.9046 28 6 6.5357 4.7316 -3.9259 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 7.0970 0.6185 2.3101 37 1 3.6723 0.8846 -2.0143 38 1 5.2116 0.9735 -1.1248 39 1 5.3649 2.3700 -3.4548 40 1 3.5007 5.1910 -2.5055 41 1 3.9699 7.5089 -3.1816 42 1 6.0777 8.0590 -4.3247 43 1 8.0783 8.4481 -4.7313 44 1 7.8161 7.8790 -6.4068 45 1 10.3964 8.0240 -4.8195 46 1 10.1348 8.2385 -6.5824 47 1 11.0760 5.8615 -5.4788 48 1 10.1059 5.9160 -6.9841 49 1 7.2549 3.9532 -4.1343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049981084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:45 Heat of formation + Delta-G solvation = -2.741976 kcal Electronic energy + Delta-G solvation = -30286.374867 eV Core-core repulsion = 26214.720665 eV Total energy + Delta-G solvation = -4071.654202 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.24467 -39.82026 -38.06099 -36.84550 -36.05492 -34.32720 -33.04999 -32.87681 -31.28290 -29.97460 -28.97671 -28.06838 -27.11933 -25.74706 -23.48941 -23.09843 -22.32637 -21.44807 -20.76205 -19.95067 -19.34539 -17.98638 -17.36891 -17.03504 -16.57319 -16.20839 -15.75405 -15.53400 -15.42512 -14.65425 -14.45373 -14.26780 -14.15949 -14.04104 -13.85237 -13.60620 -13.42118 -13.17857 -13.11002 -12.75756 -12.67653 -12.46181 -12.34923 -12.06626 -11.74376 -11.64251 -11.58476 -11.49264 -11.21404 -10.83295 -10.76603 -10.56946 -10.52208 -10.13094 -9.87258 -9.82968 -9.69496 -9.55136 -9.15465 -8.55298 -8.18086 -7.71087 -6.96042 -5.99155 -3.38461 1.33840 1.48332 2.41770 2.56104 3.20811 3.25561 3.41755 3.47017 3.52821 3.88906 3.98875 4.03109 4.34964 4.46223 4.55781 4.90457 4.98123 5.00032 5.03296 5.14641 5.24064 5.26720 5.33109 5.40377 5.49895 5.53959 5.58628 5.61254 5.63677 5.74238 5.85960 5.89174 5.99216 6.08249 6.14705 6.15663 6.38148 6.39207 6.52054 6.53879 6.60377 6.64382 6.80929 6.88046 6.97120 7.07196 7.30129 7.79171 7.85248 8.02079 8.38045 8.77213 8.95667 9.67236 10.03014 11.16591 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.002837 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.806444 B = 9866.718930 C =10989.290706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.156 3.844 4 N -0.577 5.577 5 C -0.259 4.259 6 H 0.084 0.916 7 C 0.031 3.969 8 N -0.895 5.895 9 Si 0.868 3.132 10 H -0.285 1.285 11 H -0.297 1.297 12 H -0.263 1.263 13 C 0.118 3.882 14 C 0.485 3.515 15 O -0.497 6.497 16 N -0.689 5.689 17 C 0.188 3.812 18 C -0.143 4.143 19 C -0.076 4.076 20 C -0.182 4.182 21 C 0.176 3.824 22 N -0.558 5.558 23 C 0.096 3.904 24 C -0.132 4.132 25 C -0.153 4.153 26 C 0.511 3.489 27 O -0.507 6.507 28 C -0.190 4.190 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.038 0.962 36 H 0.264 0.736 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.406 0.594 40 H 0.139 0.861 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.275 12.349 -20.295 23.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.031 3.969 4 N -0.296 5.296 5 C -0.387 4.387 6 H 0.101 0.899 7 C -0.170 4.170 8 N -0.536 5.536 9 Si 0.698 3.302 10 H -0.214 1.214 11 H -0.225 1.225 12 H -0.188 1.188 13 C -0.013 4.013 14 C 0.271 3.729 15 O -0.369 6.369 16 N -0.336 5.336 17 C 0.092 3.908 18 C -0.164 4.164 19 C -0.095 4.095 20 C -0.203 4.203 21 C 0.082 3.918 22 N -0.282 5.282 23 C -0.026 4.026 24 C -0.170 4.170 25 C -0.193 4.193 26 C 0.300 3.700 27 O -0.382 6.382 28 C -0.213 4.213 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.241 0.759 40 H 0.157 0.843 41 H 0.145 0.855 42 H 0.139 0.861 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.114 0.886 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.057 12.263 -19.413 23.053 hybrid contribution 0.751 -0.979 -0.879 1.515 sum 2.808 11.285 -20.292 23.387 Atomic orbital electron populations 1.21717 0.97015 1.00575 1.01131 1.22132 0.93996 1.00500 1.01977 1.20906 0.82885 0.93457 0.99676 1.43795 1.00890 1.84161 1.00768 1.18825 1.03647 1.26969 0.89290 0.89891 1.25408 0.96721 0.98128 0.96707 1.69863 1.07992 1.40694 1.35077 0.87075 0.78265 0.84148 0.80740 1.21383 1.22515 1.18774 1.21440 0.99096 0.90450 0.90346 1.23366 0.76069 0.95111 0.78348 1.90607 1.46377 1.46064 1.53811 1.44194 1.59554 1.05708 1.24106 1.17697 0.92270 0.85776 0.95055 1.21301 1.00467 0.92357 1.02325 1.20781 0.96078 0.96180 0.96500 1.20605 0.95532 0.97773 1.06431 1.17380 0.85352 0.93495 0.95570 1.45751 1.15981 1.11701 1.54768 1.22241 0.96186 0.83943 1.00278 1.22628 0.94525 0.95786 1.04011 1.22346 0.98562 0.95692 1.02717 1.21107 0.84200 0.85936 0.78720 1.90663 1.79767 1.15505 1.52265 1.21315 0.97648 0.96513 1.05816 0.92978 0.93477 0.93640 0.93247 0.91499 0.92614 0.94314 0.92637 0.90885 0.89759 0.75936 0.84282 0.85527 0.86104 0.89420 0.90115 0.89542 0.88630 0.87501 0.87382 0.82675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.15 0.37 -1.73 16 2 C -0.15 -2.63 6.26 -26.73 -0.17 -2.80 16 3 C 0.16 3.20 5.68 -4.04 -0.02 3.17 16 4 N -0.58 -13.97 1.64 -174.61 -0.29 -14.25 16 5 C -0.26 -7.40 9.96 -15.06 -0.15 -7.55 16 6 H 0.08 2.60 8.06 -52.49 -0.42 2.18 16 7 C 0.03 0.89 5.33 -17.43 -0.09 0.80 16 8 N -0.90 -27.98 13.97 55.49 0.78 -27.20 16 9 Si 0.87 21.68 24.83 -169.99 -4.22 17.46 16 10 H -0.29 -6.87 6.68 56.52 0.38 -6.49 16 11 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 12 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.12 2.55 4.88 -5.19 -0.03 2.53 16 14 C 0.49 10.42 7.74 -10.99 -0.09 10.34 16 15 O -0.50 -12.24 13.93 5.55 0.08 -12.17 16 16 N -0.69 -12.36 5.33 -9.88 -0.05 -12.42 16 17 C 0.19 3.34 6.28 -83.72 -0.53 2.81 16 18 C -0.14 -2.43 8.69 -39.36 -0.34 -2.77 16 19 C -0.08 -1.04 10.03 -39.64 -0.40 -1.44 16 20 C -0.18 -2.27 9.41 -39.36 -0.37 -2.64 16 21 C 0.18 2.50 6.60 -83.72 -0.55 1.94 16 22 N -0.56 -6.36 3.14 -112.29 -0.35 -6.71 16 23 C 0.10 0.61 6.46 -3.12 -0.02 0.59 16 24 C -0.13 -0.57 7.18 -25.09 -0.18 -0.75 16 25 C -0.15 -1.03 6.86 -26.74 -0.18 -1.21 16 26 C 0.51 6.27 7.92 -10.86 -0.09 6.18 16 27 O -0.51 -8.41 14.79 5.55 0.08 -8.33 16 28 C -0.19 -3.19 9.22 -39.21 -0.36 -3.55 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.17 8.04 -51.93 -0.42 0.76 16 35 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 36 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 37 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 38 H 0.09 1.97 2.90 -51.93 -0.15 1.82 16 39 H 0.41 6.04 8.83 -40.82 -0.36 5.68 16 40 H 0.14 2.56 6.30 -52.49 -0.33 2.23 16 41 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.12 1.11 6.77 -52.49 -0.36 0.75 16 43 H 0.09 0.48 7.31 -51.93 -0.38 0.10 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 47 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.16 2.78 5.21 -52.48 -0.27 2.51 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -37.01 394.29 -8.57 -45.58 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -7.34 Total: 8.18 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -3.19 Total: 3.92 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 0.08 Total: -60.59 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.16 Total: -20.49 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.22 Total: 17.46 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.01 -8.57 -45.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049981084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.840 kcal (2) G-P(sol) polarization free energy of solvation -37.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds