Wall clock time and date at job start Wed Apr 1 2020 03:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47327 * 2 1 4 4 N 1.46496 * 109.47418 * 179.97438 * 3 2 1 5 5 C 1.36931 * 120.00214 * 269.99594 * 4 3 2 6 6 H 1.07996 * 120.00135 * 325.75845 * 5 4 3 7 7 C 1.38810 * 120.00327 * 145.75044 * 5 4 3 8 8 N 1.31619 * 120.00348 * 158.39035 * 7 5 4 9 9 Si 1.86801 * 119.99968 * 338.39638 * 7 5 4 10 10 H 1.48502 * 109.47404 * 95.45819 * 9 7 5 11 11 H 1.48500 * 109.47466 * 215.45783 * 9 7 5 12 12 H 1.48496 * 109.47458 * 335.45982 * 9 7 5 13 13 C 1.46505 * 119.99896 * 89.99815 * 4 3 2 14 14 C 1.50694 * 109.47347 * 87.14237 * 13 4 3 15 15 O 1.21288 * 119.99728 * 0.02562 * 14 13 4 16 16 N 1.34771 * 120.00253 * 179.97438 * 14 13 4 17 17 C 1.39922 * 120.00298 * 184.96749 * 16 14 13 18 18 C 1.38947 * 120.03727 * 323.75567 * 17 16 14 19 19 C 1.38133 * 120.07126 * 180.02562 * 18 17 16 20 20 C 1.38179 * 120.14266 * 359.74552 * 19 18 17 21 21 C 1.38907 * 120.06657 * 0.50780 * 20 19 18 22 22 N 1.39924 * 120.03212 * 179.76806 * 21 20 19 23 23 C 1.46763 * 124.35254 * 356.33879 * 22 21 20 24 24 C 1.54482 * 105.47352 * 162.98317 * 23 22 21 25 25 C 1.54636 * 101.76169 * 25.42097 * 24 23 22 26 26 C 1.34418 * 124.34628 * 176.34490 * 22 21 20 27 27 O 1.21289 * 124.94362 * 0.66999 * 26 22 21 28 28 C 1.38727 * 120.03821 * 143.77588 * 17 16 14 29 29 H 1.09001 * 109.47284 * 300.00631 * 1 2 3 30 30 H 1.09006 * 109.47248 * 60.00368 * 1 2 3 31 31 H 1.08994 * 109.47170 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47229 * 239.99745 * 2 1 3 33 33 H 1.09006 * 109.47248 * 119.99632 * 2 1 3 34 34 H 1.08994 * 109.47174 * 59.99711 * 3 2 1 35 35 H 1.09006 * 109.46656 * 299.99994 * 3 2 1 36 36 H 0.96994 * 120.00320 * 180.02562 * 8 7 5 37 37 H 1.09005 * 109.47068 * 327.14187 * 13 4 3 38 38 H 1.08998 * 109.46961 * 207.14338 * 13 4 3 39 39 H 0.97004 * 119.99993 * 4.97965 * 16 14 13 40 40 H 1.07999 * 119.96132 * 359.97438 * 18 17 16 41 41 H 1.08001 * 119.92797 * 180.02562 * 19 18 17 42 42 H 1.08001 * 119.96765 * 180.27383 * 20 19 18 43 43 H 1.09002 * 110.24088 * 43.99198 * 23 22 21 44 44 H 1.08995 * 110.25156 * 281.98684 * 23 22 21 45 45 H 1.08992 * 110.97554 * 267.30387 * 24 23 22 46 46 H 1.08999 * 110.99922 * 143.55013 * 24 23 22 47 47 H 1.09001 * 110.48584 * 216.52093 * 25 24 23 48 48 H 1.09000 * 110.48652 * 93.88016 * 25 24 23 49 49 H 1.08003 * 120.06524 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4428 1.1867 6 1 3.7892 1.9692 2.0407 7 6 5.3967 0.7663 1.2917 8 7 6.2530 1.0910 2.2370 9 14 5.8065 -0.6048 0.0910 10 1 6.6255 -0.0602 -1.0217 11 1 6.5705 -1.6666 0.7940 12 1 4.5496 -1.1777 -0.4540 13 6 4.2380 1.4423 -1.2679 14 6 4.4280 2.8612 -1.7385 15 8 3.9942 3.7821 -1.0790 16 7 5.0808 3.1070 -2.8917 17 6 5.3485 4.4252 -3.2768 18 6 4.4255 5.4289 -3.0101 19 6 4.6888 6.7305 -3.3905 20 6 5.8727 7.0397 -4.0325 21 6 6.7973 6.0400 -4.3068 22 7 7.9937 6.3531 -4.9613 23 6 8.3359 7.6873 -5.4682 24 6 9.8632 7.6615 -5.6984 25 6 10.1232 6.1535 -5.9204 26 6 8.9774 5.4705 -5.2067 27 8 8.9485 4.2962 -4.9046 28 6 6.5357 4.7316 -3.9259 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 7.0970 0.6185 2.3101 37 1 3.6723 0.8846 -2.0143 38 1 5.2116 0.9735 -1.1248 39 1 5.3649 2.3700 -3.4548 40 1 3.5007 5.1910 -2.5055 41 1 3.9699 7.5089 -3.1816 42 1 6.0777 8.0590 -4.3247 43 1 8.0783 8.4481 -4.7313 44 1 7.8161 7.8790 -6.4068 45 1 10.3964 8.0240 -4.8195 46 1 10.1348 8.2385 -6.5824 47 1 11.0760 5.8615 -5.4788 48 1 10.1059 5.9160 -6.9841 49 1 7.2549 3.9532 -4.1343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049981084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:44 Heat of formation + Delta-G solvation = -27.948751 kcal Electronic energy + Delta-G solvation = -30287.467915 eV Core-core repulsion = 26214.720665 eV Total energy + Delta-G solvation = -4072.747250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.16539 -41.26676 -39.39384 -37.95016 -37.59692 -35.75434 -34.65480 -33.91925 -33.22296 -31.27634 -30.04312 -28.95817 -28.41385 -27.60039 -24.61023 -24.24601 -23.75769 -22.60421 -21.86820 -21.55189 -20.54489 -19.40769 -18.78990 -18.33017 -17.79113 -17.52223 -17.14627 -17.02306 -16.46844 -16.25766 -15.98276 -15.66935 -15.40459 -15.02531 -14.94009 -14.78711 -14.55138 -14.46157 -14.39075 -14.32068 -14.10315 -13.73633 -13.53219 -13.37164 -12.97397 -12.86140 -12.69252 -12.50895 -12.34617 -12.30783 -12.19188 -12.13362 -12.05207 -11.59189 -11.51364 -11.38906 -11.05496 -10.84587 -10.72963 -10.62552 -9.42394 -8.95502 -8.86352 -8.24274 -5.62340 0.18004 0.28126 1.21601 1.36160 1.43242 1.48474 1.64645 1.75924 2.11122 2.35047 2.82171 2.98586 3.25402 3.27384 3.54207 3.82254 3.97058 4.02226 4.09910 4.14387 4.20022 4.23012 4.26336 4.27451 4.40163 4.44709 4.50222 4.59938 4.62169 4.64480 4.73720 4.74268 4.83495 4.91499 5.07076 5.09592 5.16448 5.18248 5.25415 5.28776 5.36560 5.40354 5.45854 5.57235 5.61027 5.84914 6.04417 6.07327 6.11099 6.40606 6.84161 6.93060 7.20447 7.52791 7.90441 8.95950 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.002837 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.806444 B = 9866.718930 C =10989.290706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.138 4.138 3 C 0.154 3.846 4 N -0.590 5.590 5 C -0.252 4.252 6 H 0.033 0.967 7 C -0.031 4.031 8 N -0.952 5.952 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.305 1.305 12 H -0.234 1.234 13 C 0.113 3.887 14 C 0.486 3.514 15 O -0.539 6.539 16 N -0.676 5.676 17 C 0.160 3.840 18 C -0.166 4.166 19 C -0.071 4.071 20 C -0.164 4.164 21 C 0.171 3.829 22 N -0.561 5.561 23 C 0.084 3.916 24 C -0.118 4.118 25 C -0.145 4.145 26 C 0.492 3.508 27 O -0.564 6.564 28 C -0.209 4.209 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.036 0.964 35 H 0.057 0.943 36 H 0.263 0.737 37 H 0.119 0.881 38 H 0.071 0.929 39 H 0.419 0.581 40 H 0.118 0.882 41 H 0.158 0.842 42 H 0.166 0.834 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.089 0.911 46 H 0.132 0.868 47 H 0.111 0.889 48 H 0.130 0.870 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.402 14.015 -24.363 28.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.177 4.177 3 C 0.030 3.970 4 N -0.310 5.310 5 C -0.382 4.382 6 H 0.051 0.949 7 C -0.226 4.226 8 N -0.595 5.595 9 Si 0.766 3.234 10 H -0.199 1.199 11 H -0.233 1.233 12 H -0.157 1.157 13 C -0.017 4.017 14 C 0.272 3.728 15 O -0.414 6.414 16 N -0.324 5.324 17 C 0.065 3.935 18 C -0.187 4.187 19 C -0.090 4.090 20 C -0.185 4.185 21 C 0.076 3.924 22 N -0.284 5.284 23 C -0.036 4.036 24 C -0.155 4.155 25 C -0.184 4.184 26 C 0.284 3.716 27 O -0.443 6.443 28 C -0.232 4.232 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.089 0.911 39 H 0.256 0.744 40 H 0.136 0.864 41 H 0.175 0.825 42 H 0.183 0.817 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.108 0.892 46 H 0.150 0.850 47 H 0.130 0.870 48 H 0.148 0.852 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.173 13.972 -23.572 27.488 hybrid contribution 0.715 -1.269 0.329 1.493 sum 2.888 12.703 -23.244 26.645 Atomic orbital electron populations 1.21653 0.93926 1.02116 1.01988 1.21996 0.96655 0.97898 1.01198 1.21028 0.80910 0.95443 0.99649 1.43856 1.02262 1.84691 1.00187 1.18603 1.03787 1.25793 0.89989 0.94916 1.26120 0.96536 1.00549 0.99427 1.70024 1.08786 1.42370 1.38367 0.85927 0.79160 0.79850 0.78432 1.19885 1.23340 1.15703 1.21547 0.98867 0.90983 0.90257 1.23128 0.76110 0.94614 0.78907 1.90593 1.48475 1.47000 1.55326 1.43863 1.58432 1.06854 1.23239 1.17868 0.93351 0.85537 0.96774 1.21292 0.99936 0.93934 1.03557 1.21159 0.97166 0.95385 0.95299 1.21031 0.93943 0.99283 1.04216 1.17623 0.86884 0.92851 0.95010 1.46107 1.14681 1.13783 1.53810 1.22711 0.97943 0.81386 1.01551 1.22698 0.92892 0.94036 1.05876 1.22424 0.96070 0.96868 1.03061 1.22268 0.85662 0.85519 0.78195 1.90626 1.81008 1.18130 1.54537 1.21277 0.97129 0.97839 1.06972 0.93066 0.91754 0.91734 0.92234 0.93975 0.94555 0.92445 0.92827 0.86290 0.91143 0.74424 0.86414 0.82461 0.81669 0.88003 0.87756 0.89206 0.84997 0.87047 0.85226 0.84396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.91 71.98 0.71 -2.95 16 2 C -0.14 -4.79 6.26 30.59 0.19 -4.60 16 3 C 0.15 6.34 5.68 86.38 0.49 6.83 16 4 N -0.59 -29.09 1.64 -706.35 -1.16 -30.24 16 5 C -0.25 -15.16 9.96 84.03 0.84 -14.32 16 6 H 0.03 2.24 8.06 -2.91 -0.02 2.22 16 7 C -0.03 -1.87 5.33 84.86 0.45 -1.41 16 8 N -0.95 -62.62 13.97 21.65 0.30 -62.32 16 9 Si 0.94 45.76 24.83 68.60 1.70 47.46 16 10 H -0.27 -12.50 6.68 99.48 0.66 -11.84 16 11 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 12 H -0.23 -10.21 7.11 99.48 0.71 -9.50 16 13 C 0.11 4.87 4.88 85.63 0.42 5.29 16 14 C 0.49 21.34 7.74 87.66 0.68 22.02 16 15 O -0.54 -27.69 13.93 -3.05 -0.04 -27.73 16 16 N -0.68 -24.88 5.33 -303.57 -1.62 -26.50 16 17 C 0.16 5.83 6.28 38.14 0.24 6.07 16 18 C -0.17 -5.71 8.69 22.41 0.19 -5.51 16 19 C -0.07 -1.82 10.03 22.23 0.22 -1.60 16 20 C -0.16 -3.60 9.41 22.42 0.21 -3.39 16 21 C 0.17 4.65 6.60 38.13 0.25 4.90 16 22 N -0.56 -11.62 3.14 -627.76 -1.97 -13.59 16 23 C 0.08 0.70 6.46 86.83 0.56 1.26 16 24 C -0.12 -0.48 7.18 31.66 0.23 -0.25 16 25 C -0.14 -1.53 6.86 30.59 0.21 -1.32 16 26 C 0.49 11.64 7.92 87.90 0.70 12.34 16 27 O -0.56 -19.36 14.79 -3.06 -0.05 -19.41 16 28 C -0.21 -7.18 9.22 22.51 0.21 -6.98 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.04 1.60 8.04 -2.39 -0.02 1.58 16 35 H 0.06 2.13 8.07 -2.38 -0.02 2.11 16 36 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 37 H 0.12 3.97 8.09 -2.38 -0.02 3.95 16 38 H 0.07 3.25 2.90 -2.39 -0.01 3.25 16 39 H 0.42 12.63 8.83 -92.71 -0.82 11.81 16 40 H 0.12 4.53 6.30 -2.91 -0.02 4.51 16 41 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 42 H 0.17 2.14 6.77 -2.91 -0.02 2.12 16 43 H 0.10 0.59 7.31 -2.39 -0.02 0.58 16 44 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.13 -0.32 8.14 -2.39 -0.02 -0.34 16 47 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.14 5.23 5.21 -2.91 -0.02 5.21 16 Total: -1.00 -89.80 394.29 4.09 -85.71 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.11 Total: 30.24 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 6.80 Total: 16.37 kcal Atomic # 7 Polarization: -128.21 SS G_CDS: -4.44 Total: -132.65 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -0.09 Total: -47.14 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.70 Total: 47.46 kcal Total: -89.80 4.09 -85.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049981084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.766 kcal (2) G-P(sol) polarization free energy of solvation -89.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds