Wall clock time and date at job start Wed Apr 1 2020 03:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46826 * 2 1 4 4 N 1.46498 * 109.46833 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00091 * 274.22921 * 4 3 2 6 6 H 1.07996 * 120.00388 * 320.47889 * 5 4 3 7 7 C 1.38819 * 119.99837 * 140.47301 * 5 4 3 8 8 N 1.31618 * 119.99507 * 157.37680 * 7 5 4 9 9 Si 1.86800 * 120.00031 * 337.37839 * 7 5 4 10 10 H 1.48501 * 109.46930 * 95.30614 * 9 7 5 11 11 H 1.48497 * 109.47146 * 215.30361 * 9 7 5 12 12 H 1.48492 * 109.47188 * 335.30798 * 9 7 5 13 13 C 1.46500 * 120.00204 * 94.23159 * 4 3 2 14 14 C 1.50702 * 109.47192 * 89.99761 * 13 4 3 15 15 O 1.21286 * 119.99670 * 0.02562 * 14 13 4 16 16 N 1.34778 * 119.99988 * 180.02562 * 14 13 4 17 17 C 1.39957 * 119.99752 * 185.43295 * 16 14 13 18 18 C 1.38992 * 119.99851 * 144.54706 * 17 16 14 19 19 C 1.38210 * 120.22093 * 179.74086 * 18 17 16 20 20 C 1.38030 * 120.22429 * 359.97438 * 19 18 17 21 21 C 1.39578 * 119.99476 * 0.02562 * 20 19 18 22 22 C 1.47854 * 120.11265 * 179.97438 * 21 20 19 23 23 O 1.21544 * 120.00221 * 180.02562 * 22 21 20 24 24 N 1.34780 * 119.99970 * 0.02562 * 22 21 20 25 25 C 1.46501 * 120.00218 * 179.97438 * 24 22 21 26 26 C 1.52995 * 117.50241 * 223.62594 * 25 24 22 27 27 C 1.52997 * 117.49705 * 155.00044 * 25 24 22 28 28 C 1.38595 * 119.99685 * 324.26488 * 17 16 14 29 29 H 1.09000 * 109.47182 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47579 * 300.00308 * 1 2 3 31 31 H 1.09003 * 109.46924 * 60.00146 * 1 2 3 32 32 H 1.08996 * 109.47021 * 240.00189 * 2 1 3 33 33 H 1.08994 * 109.47106 * 119.99712 * 2 1 3 34 34 H 1.08995 * 109.46871 * 59.99817 * 3 2 1 35 35 H 1.09003 * 109.47250 * 299.99654 * 3 2 1 36 36 H 0.97000 * 119.99513 * 179.97438 * 8 7 5 37 37 H 1.09005 * 109.46982 * 329.99801 * 13 4 3 38 38 H 1.08995 * 109.47574 * 210.00431 * 13 4 3 39 39 H 0.96998 * 120.00368 * 5.42176 * 16 14 13 40 40 H 1.07998 * 119.88994 * 359.72196 * 18 17 16 41 41 H 1.08001 * 119.89096 * 179.97438 * 19 18 17 42 42 H 1.08000 * 120.00034 * 180.02562 * 20 19 18 43 43 H 0.97002 * 119.99827 * 0.02562 * 24 22 21 44 44 H 1.08998 * 115.54858 * 9.33941 * 25 24 22 45 45 H 1.09003 * 117.49582 * 359.97438 * 26 25 24 46 46 H 1.09003 * 117.50289 * 145.02436 * 26 25 24 47 47 H 1.08999 * 117.49946 * 214.98346 * 27 25 24 48 48 H 1.09000 * 117.50383 * 359.97438 * 27 25 24 49 49 H 1.08000 * 120.11366 * 0.26550 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1892 1.3553 1.1836 6 1 3.8340 1.8879 2.0534 7 6 5.3392 0.5821 1.2648 8 7 6.2299 0.8241 2.2031 9 14 5.6227 -0.8016 0.0423 10 1 6.4668 -0.3091 -1.0758 11 1 6.3097 -1.9293 0.7216 12 1 4.3170 -1.2663 -0.4908 13 6 4.2380 1.5360 -1.2643 14 6 4.4893 2.9850 -1.5935 15 8 4.0952 3.8541 -0.8448 16 7 5.1519 3.3151 -2.7198 17 6 5.4851 4.6513 -2.9694 18 6 6.6804 4.9620 -3.6072 19 6 7.0116 6.2796 -3.8608 20 6 6.1573 7.2959 -3.4830 21 6 4.9546 6.9943 -2.8420 22 6 4.0379 8.0809 -2.4356 23 8 2.9914 7.8161 -1.8771 24 7 4.3628 9.3651 -2.6845 25 6 3.4542 10.4417 -2.2824 26 6 3.2118 11.5725 -3.2839 27 6 4.0620 11.8241 -2.0370 28 6 4.6205 5.6644 -2.5860 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 1.9564 -0.8900 36 1 7.0333 0.2836 2.2601 37 1 3.6493 1.0794 -2.0600 38 1 5.1903 1.0139 -1.1719 39 1 5.3980 2.6267 -3.3572 40 1 7.3527 4.1711 -3.9052 41 1 7.9419 6.5150 -4.3563 42 1 6.4195 8.3242 -3.6833 43 1 5.1978 9.5764 -3.1305 44 1 2.6183 10.1402 -1.6511 45 1 3.7286 11.5157 -4.2419 46 1 2.2161 12.0152 -3.3119 47 1 3.6256 12.4323 -1.2447 48 1 5.1378 11.9326 -2.1743 49 1 3.6912 5.4250 -2.0906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049981085.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:37 Heat of formation + Delta-G solvation = 12.112933 kcal Electronic energy + Delta-G solvation = -29886.897398 eV Core-core repulsion = 25815.887353 eV Total energy + Delta-G solvation = -4071.010045 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.51998 -39.61327 -38.10314 -37.12980 -36.06772 -34.38535 -33.03592 -32.87348 -31.35256 -30.99804 -29.75728 -27.19224 -25.74308 -24.57559 -23.00792 -22.73124 -22.06408 -21.89907 -20.79418 -20.37024 -19.75068 -18.35722 -17.26788 -16.89704 -16.39649 -16.11886 -15.98810 -15.51622 -15.06367 -14.80791 -14.59401 -14.48010 -14.22676 -14.11626 -13.91124 -13.51625 -13.29023 -12.95541 -12.79904 -12.74583 -12.50061 -12.36132 -11.96045 -11.94600 -11.72249 -11.62130 -11.54439 -11.19190 -10.84669 -10.83805 -10.74583 -10.57966 -10.33233 -10.11391 -9.95792 -9.86035 -9.62905 -9.25671 -9.05557 -8.85397 -8.55407 -8.02885 -6.89402 -6.03733 -3.46373 0.81634 1.37397 2.73353 2.82928 3.16085 3.22324 3.38399 3.42281 3.44150 3.60867 3.94680 4.43334 4.43632 4.54100 4.63462 4.65748 4.77805 4.89102 4.99148 5.15597 5.22891 5.27067 5.35773 5.46133 5.50348 5.54120 5.64053 5.67303 5.71787 5.74037 5.87068 5.91144 6.00847 6.09518 6.16726 6.22927 6.25362 6.32860 6.40101 6.41769 6.53805 6.55968 6.57338 6.91377 7.09613 7.10656 7.30862 7.72108 8.00697 8.11657 8.40457 8.73045 8.94261 9.63861 10.02821 11.11736 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012570 B = 0.002712 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.048957 B =10320.711204 C =11357.204489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.144 4.144 3 C 0.154 3.846 4 N -0.577 5.577 5 C -0.259 4.259 6 H 0.080 0.920 7 C 0.035 3.965 8 N -0.892 5.892 9 Si 0.866 3.134 10 H -0.287 1.287 11 H -0.297 1.297 12 H -0.261 1.261 13 C 0.120 3.880 14 C 0.481 3.519 15 O -0.490 6.490 16 N -0.691 5.691 17 C 0.156 3.844 18 C -0.127 4.127 19 C -0.108 4.108 20 C -0.115 4.115 21 C -0.121 4.121 22 C 0.565 3.435 23 O -0.523 6.523 24 N -0.703 5.703 25 C 0.082 3.918 26 C -0.194 4.194 27 C -0.190 4.190 28 C -0.062 4.062 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.039 0.961 36 H 0.264 0.736 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.406 0.594 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.400 0.600 44 H 0.139 0.861 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.104 0.896 48 H 0.097 0.903 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.669 13.827 -17.078 21.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 C 0.029 3.971 4 N -0.296 5.296 5 C -0.388 4.388 6 H 0.098 0.902 7 C -0.166 4.166 8 N -0.532 5.532 9 Si 0.695 3.305 10 H -0.215 1.215 11 H -0.225 1.225 12 H -0.186 1.186 13 C -0.011 4.011 14 C 0.267 3.733 15 O -0.360 6.360 16 N -0.339 5.339 17 C 0.060 3.940 18 C -0.148 4.148 19 C -0.127 4.127 20 C -0.134 4.134 21 C -0.125 4.125 22 C 0.353 3.647 23 O -0.399 6.399 24 N -0.354 5.354 25 C -0.024 4.024 26 C -0.233 4.233 27 C -0.229 4.229 28 C -0.084 4.084 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.242 0.758 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.139 0.861 43 H 0.236 0.764 44 H 0.157 0.843 45 H 0.115 0.885 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.115 0.885 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.642 14.097 -15.873 21.292 hybrid contribution 1.240 -0.919 -1.187 1.947 sum -0.401 13.178 -17.060 21.560 Atomic orbital electron populations 1.21724 0.97056 1.00546 1.01156 1.22109 0.93919 1.00376 1.02000 1.20946 0.83013 0.93497 0.99642 1.43779 1.00830 1.83215 1.01740 1.18779 1.07335 1.23848 0.88856 0.90243 1.25544 0.96705 0.97807 0.96537 1.69905 1.08774 1.39111 1.35439 0.87080 0.78247 0.84226 0.80945 1.21495 1.22465 1.18551 1.21431 0.98913 0.89724 0.90997 1.23493 0.76082 0.95051 0.78707 1.90661 1.47257 1.50564 1.47545 1.44248 1.59643 1.05971 1.24016 1.17836 0.93055 0.85349 0.97752 1.21171 0.94755 0.97369 1.01531 1.20795 0.99499 0.91894 1.00503 1.21098 0.93900 0.99112 0.99326 1.19668 0.95921 0.93423 1.03465 1.18300 0.85916 0.82203 0.78254 1.90805 1.24854 1.83258 1.41008 1.45268 1.23256 1.05131 1.61754 1.21600 0.96695 0.82356 1.01733 1.23432 1.01983 1.03170 0.94728 1.23381 1.00023 0.99060 1.00391 1.21479 1.00187 0.90007 0.96684 0.93658 0.92964 0.93488 0.93244 0.91466 0.92820 0.94226 0.92649 0.90857 0.89787 0.75844 0.85289 0.85279 0.86141 0.76415 0.84292 0.88536 0.87942 0.87778 0.88457 0.82786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.78 16 2 C -0.14 -2.62 6.24 -26.73 -0.17 -2.79 16 3 C 0.15 3.17 5.67 -4.04 -0.02 3.15 16 4 N -0.58 -13.74 1.53 -174.61 -0.27 -14.00 16 5 C -0.26 -7.32 9.89 -15.06 -0.15 -7.47 16 6 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 7 C 0.03 0.99 5.28 -17.43 -0.09 0.90 16 8 N -0.89 -27.24 13.97 55.49 0.78 -26.47 16 9 Si 0.87 20.80 25.17 -169.99 -4.28 16.52 16 10 H -0.29 -6.47 6.67 56.52 0.38 -6.09 16 11 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 13 C 0.12 2.49 4.97 -5.19 -0.03 2.46 16 14 C 0.48 9.89 7.74 -10.98 -0.09 9.80 16 15 O -0.49 -12.14 13.88 5.55 0.08 -12.06 16 16 N -0.69 -10.96 5.33 -9.89 -0.05 -11.01 16 17 C 0.16 2.43 6.29 -83.74 -0.53 1.91 16 18 C -0.13 -1.55 9.96 -39.31 -0.39 -1.94 16 19 C -0.11 -1.12 10.02 -39.67 -0.40 -1.51 16 20 C -0.11 -1.24 9.54 -39.16 -0.37 -1.61 16 21 C -0.12 -1.77 5.87 -104.99 -0.62 -2.39 16 22 C 0.57 8.54 7.77 -12.32 -0.10 8.44 16 23 O -0.52 -10.14 15.91 5.33 0.08 -10.05 16 24 N -0.70 -7.54 5.52 -54.75 -0.30 -7.84 16 25 C 0.08 0.81 6.43 -67.93 -0.44 0.37 16 26 C -0.19 -1.38 10.46 -26.73 -0.28 -1.66 16 27 C -0.19 -1.33 10.46 -26.73 -0.28 -1.61 16 28 C -0.06 -1.09 8.25 -38.98 -0.32 -1.41 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.05 1.16 8.07 -51.93 -0.42 0.74 16 35 H 0.04 0.75 8.04 -51.93 -0.42 0.33 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 38 H 0.08 1.83 3.55 -51.93 -0.18 1.65 16 39 H 0.41 4.82 8.82 -40.82 -0.36 4.46 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 42 H 0.12 0.86 6.40 -52.49 -0.34 0.53 16 43 H 0.40 3.05 6.86 -40.82 -0.28 2.77 16 44 H 0.14 1.61 7.40 -51.93 -0.38 1.23 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.15 3.21 5.82 -52.49 -0.31 2.91 16 LS Contribution 405.76 15.07 6.11 6.11 Total: -1.00 -36.51 405.76 -9.08 -45.59 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -7.34 Total: 10.35 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -3.89 Total: 2.87 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.15 Total: -59.32 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: 0.16 Total: -22.12 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.28 Total: 16.52 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.51 -9.08 -45.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049981085.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.698 kcal (2) G-P(sol) polarization free energy of solvation -36.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds