Wall clock time and date at job start Wed Apr 1 2020 03:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46826 * 2 1 4 4 N 1.46498 * 109.46833 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00091 * 274.22921 * 4 3 2 6 6 H 1.07996 * 120.00388 * 320.47889 * 5 4 3 7 7 C 1.38819 * 119.99837 * 140.47301 * 5 4 3 8 8 N 1.31618 * 119.99507 * 157.37680 * 7 5 4 9 9 Si 1.86800 * 120.00031 * 337.37839 * 7 5 4 10 10 H 1.48501 * 109.46930 * 95.30614 * 9 7 5 11 11 H 1.48497 * 109.47146 * 215.30361 * 9 7 5 12 12 H 1.48492 * 109.47188 * 335.30798 * 9 7 5 13 13 C 1.46500 * 120.00204 * 94.23159 * 4 3 2 14 14 C 1.50702 * 109.47192 * 89.99761 * 13 4 3 15 15 O 1.21286 * 119.99670 * 0.02562 * 14 13 4 16 16 N 1.34778 * 119.99988 * 180.02562 * 14 13 4 17 17 C 1.39957 * 119.99752 * 185.43295 * 16 14 13 18 18 C 1.38992 * 119.99851 * 144.54706 * 17 16 14 19 19 C 1.38210 * 120.22093 * 179.74086 * 18 17 16 20 20 C 1.38030 * 120.22429 * 359.97438 * 19 18 17 21 21 C 1.39578 * 119.99476 * 0.02562 * 20 19 18 22 22 C 1.47854 * 120.11265 * 179.97438 * 21 20 19 23 23 O 1.21544 * 120.00221 * 180.02562 * 22 21 20 24 24 N 1.34780 * 119.99970 * 0.02562 * 22 21 20 25 25 C 1.46501 * 120.00218 * 179.97438 * 24 22 21 26 26 C 1.52995 * 117.50241 * 223.62594 * 25 24 22 27 27 C 1.52997 * 117.49705 * 155.00044 * 25 24 22 28 28 C 1.38595 * 119.99685 * 324.26488 * 17 16 14 29 29 H 1.09000 * 109.47182 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47579 * 300.00308 * 1 2 3 31 31 H 1.09003 * 109.46924 * 60.00146 * 1 2 3 32 32 H 1.08996 * 109.47021 * 240.00189 * 2 1 3 33 33 H 1.08994 * 109.47106 * 119.99712 * 2 1 3 34 34 H 1.08995 * 109.46871 * 59.99817 * 3 2 1 35 35 H 1.09003 * 109.47250 * 299.99654 * 3 2 1 36 36 H 0.97000 * 119.99513 * 179.97438 * 8 7 5 37 37 H 1.09005 * 109.46982 * 329.99801 * 13 4 3 38 38 H 1.08995 * 109.47574 * 210.00431 * 13 4 3 39 39 H 0.96998 * 120.00368 * 5.42176 * 16 14 13 40 40 H 1.07998 * 119.88994 * 359.72196 * 18 17 16 41 41 H 1.08001 * 119.89096 * 179.97438 * 19 18 17 42 42 H 1.08000 * 120.00034 * 180.02562 * 20 19 18 43 43 H 0.97002 * 119.99827 * 0.02562 * 24 22 21 44 44 H 1.08998 * 115.54858 * 9.33941 * 25 24 22 45 45 H 1.09003 * 117.49582 * 359.97438 * 26 25 24 46 46 H 1.09003 * 117.50289 * 145.02436 * 26 25 24 47 47 H 1.08999 * 117.49946 * 214.98346 * 27 25 24 48 48 H 1.09000 * 117.50383 * 359.97438 * 27 25 24 49 49 H 1.08000 * 120.11366 * 0.26550 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1892 1.3553 1.1836 6 1 3.8340 1.8879 2.0534 7 6 5.3392 0.5821 1.2648 8 7 6.2299 0.8241 2.2031 9 14 5.6227 -0.8016 0.0423 10 1 6.4668 -0.3091 -1.0758 11 1 6.3097 -1.9293 0.7216 12 1 4.3170 -1.2663 -0.4908 13 6 4.2380 1.5360 -1.2643 14 6 4.4893 2.9850 -1.5935 15 8 4.0952 3.8541 -0.8448 16 7 5.1519 3.3151 -2.7198 17 6 5.4851 4.6513 -2.9694 18 6 6.6804 4.9620 -3.6072 19 6 7.0116 6.2796 -3.8608 20 6 6.1573 7.2959 -3.4830 21 6 4.9546 6.9943 -2.8420 22 6 4.0379 8.0809 -2.4356 23 8 2.9914 7.8161 -1.8771 24 7 4.3628 9.3651 -2.6845 25 6 3.4542 10.4417 -2.2824 26 6 3.2118 11.5725 -3.2839 27 6 4.0620 11.8241 -2.0370 28 6 4.6205 5.6644 -2.5860 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 1.9564 -0.8900 36 1 7.0333 0.2836 2.2601 37 1 3.6493 1.0794 -2.0600 38 1 5.1903 1.0139 -1.1719 39 1 5.3980 2.6267 -3.3572 40 1 7.3527 4.1711 -3.9052 41 1 7.9419 6.5150 -4.3563 42 1 6.4195 8.3242 -3.6833 43 1 5.1978 9.5764 -3.1305 44 1 2.6183 10.1402 -1.6511 45 1 3.7286 11.5157 -4.2419 46 1 2.2161 12.0152 -3.3119 47 1 3.6256 12.4323 -1.2447 48 1 5.1378 11.9326 -2.1743 49 1 3.6912 5.4250 -2.0906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049981085.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:36 Heat of formation + Delta-G solvation = -14.419913 kcal Electronic energy + Delta-G solvation = -29888.047949 eV Core-core repulsion = 25815.887353 eV Total energy + Delta-G solvation = -4072.160596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.71562 -40.89933 -39.31134 -38.06098 -37.74989 -35.77739 -34.62765 -34.05536 -33.24699 -32.01534 -31.01600 -28.70539 -27.58608 -25.60733 -24.43183 -23.51797 -23.29345 -22.76675 -22.06079 -21.65892 -21.36030 -19.59735 -18.94768 -18.18330 -17.76235 -17.32669 -17.18494 -16.97513 -16.31969 -16.12180 -15.97740 -15.80305 -15.54252 -15.26789 -15.22552 -14.85971 -14.72217 -14.44807 -14.33126 -14.08525 -13.72101 -13.71453 -13.33085 -12.85796 -12.82881 -12.69622 -12.57382 -12.51777 -12.39294 -12.32220 -12.18953 -12.07395 -11.60949 -11.54425 -11.45512 -11.40143 -11.13519 -10.88237 -10.61444 -10.09127 -9.76314 -9.20968 -8.83664 -8.22257 -5.65844 -0.23455 0.30746 1.26176 1.42997 1.54137 1.60734 1.80396 1.88283 2.14428 2.40117 2.79879 2.99631 3.01233 3.28652 3.56015 3.73592 3.85630 3.99727 4.02133 4.04414 4.11528 4.19312 4.20343 4.30623 4.33437 4.42702 4.48044 4.53094 4.62508 4.71893 4.74064 4.76128 4.89372 4.90673 4.99578 5.15174 5.18892 5.23609 5.25127 5.28910 5.31056 5.40013 5.40672 5.49399 5.56856 5.89256 5.95525 6.16241 6.40222 6.47399 6.89774 7.08855 7.29160 7.54229 7.94700 8.98305 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012570 B = 0.002712 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.048957 B =10320.711204 C =11357.204489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.134 4.134 3 C 0.152 3.848 4 N -0.590 5.590 5 C -0.260 4.260 6 H 0.016 0.984 7 C -0.025 4.025 8 N -0.950 5.950 9 Si 0.945 3.055 10 H -0.254 1.254 11 H -0.306 1.306 12 H -0.238 1.238 13 C 0.116 3.884 14 C 0.479 3.521 15 O -0.548 6.548 16 N -0.671 5.671 17 C 0.125 3.875 18 C -0.114 4.114 19 C -0.096 4.096 20 C -0.094 4.094 21 C -0.140 4.140 22 C 0.556 3.444 23 O -0.586 6.586 24 N -0.679 5.679 25 C 0.039 3.961 26 C -0.174 4.174 27 C -0.169 4.169 28 C -0.098 4.098 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.041 0.959 34 H 0.025 0.975 35 H 0.056 0.944 36 H 0.265 0.735 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.427 0.573 40 H 0.162 0.838 41 H 0.180 0.820 42 H 0.166 0.834 43 H 0.418 0.582 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.109 0.891 47 H 0.111 0.889 48 H 0.116 0.884 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.737 14.304 -22.153 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.028 3.972 4 N -0.310 5.310 5 C -0.390 4.390 6 H 0.034 0.966 7 C -0.221 4.221 8 N -0.593 5.593 9 Si 0.770 3.230 10 H -0.180 1.180 11 H -0.234 1.234 12 H -0.161 1.161 13 C -0.014 4.014 14 C 0.265 3.735 15 O -0.423 6.423 16 N -0.321 5.321 17 C 0.030 3.970 18 C -0.135 4.135 19 C -0.114 4.114 20 C -0.113 4.113 21 C -0.144 4.144 22 C 0.345 3.655 23 O -0.467 6.467 24 N -0.330 5.330 25 C -0.067 4.067 26 C -0.213 4.213 27 C -0.207 4.207 28 C -0.120 4.120 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.139 0.861 38 H 0.098 0.902 39 H 0.266 0.734 40 H 0.179 0.821 41 H 0.197 0.803 42 H 0.183 0.817 43 H 0.257 0.743 44 H 0.125 0.875 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.129 0.871 48 H 0.134 0.866 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.795 14.627 -21.062 25.655 hybrid contribution 0.507 -0.789 0.370 1.008 sum 1.302 13.837 -20.692 24.926 Atomic orbital electron populations 1.21667 0.94152 1.02137 1.01836 1.21962 0.96420 0.97703 1.01298 1.21022 0.81638 0.95461 0.99127 1.43808 1.01912 1.83850 1.01456 1.18453 1.07884 1.23331 0.89322 0.96619 1.26304 0.95926 1.00225 0.99669 1.70075 1.09751 1.40600 1.38900 0.85819 0.79501 0.78931 0.78714 1.18029 1.23416 1.16091 1.21578 0.99131 0.89979 0.90673 1.23296 0.76128 0.94577 0.79450 1.90672 1.49855 1.51864 1.49880 1.43769 1.58232 1.07156 1.22902 1.18029 0.94677 0.84303 0.99978 1.21587 0.93127 0.99502 0.99265 1.21408 1.00617 0.90545 0.98804 1.21597 0.91514 1.01828 0.96337 1.19755 0.97675 0.92025 1.04912 1.18607 0.85342 0.83734 0.77777 1.90769 1.27499 1.84283 1.44154 1.45051 1.23779 1.03820 1.60357 1.21667 0.97240 0.83318 1.04479 1.23520 1.02730 0.99876 0.95130 1.23494 1.01127 0.95640 1.00437 1.21234 0.99557 0.92397 0.98776 0.91541 0.93396 0.91807 0.91867 0.94049 0.95656 0.92522 0.92607 0.86102 0.90244 0.73353 0.82055 0.80263 0.81689 0.74285 0.87473 0.86855 0.87246 0.87056 0.86591 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.91 71.98 0.71 -3.19 16 2 C -0.13 -4.82 6.24 30.60 0.19 -4.63 16 3 C 0.15 6.52 5.67 86.38 0.49 7.01 16 4 N -0.59 -29.15 1.53 -706.33 -1.08 -30.23 16 5 C -0.26 -15.70 9.89 84.04 0.83 -14.87 16 6 H 0.02 1.13 8.06 -2.91 -0.02 1.10 16 7 C -0.03 -1.48 5.28 84.86 0.45 -1.04 16 8 N -0.95 -61.12 13.97 21.65 0.30 -60.82 16 9 Si 0.95 43.08 25.17 68.60 1.73 44.81 16 10 H -0.25 -10.21 6.67 99.48 0.66 -9.54 16 11 H -0.31 -14.34 7.11 99.48 0.71 -13.64 16 12 H -0.24 -9.87 7.11 99.48 0.71 -9.17 16 13 C 0.12 4.73 4.97 85.63 0.43 5.16 16 14 C 0.48 20.27 7.74 87.66 0.68 20.95 16 15 O -0.55 -29.42 13.88 -3.05 -0.04 -29.46 16 16 N -0.67 -20.92 5.33 -303.59 -1.62 -22.54 16 17 C 0.12 3.85 6.29 38.11 0.24 4.09 16 18 C -0.11 -2.36 9.96 22.44 0.22 -2.13 16 19 C -0.10 -1.47 10.02 22.21 0.22 -1.25 16 20 C -0.09 -1.69 9.54 22.54 0.22 -1.47 16 21 C -0.14 -4.15 5.87 -20.10 -0.12 -4.26 16 22 C 0.56 17.81 7.77 86.79 0.67 18.48 16 23 O -0.59 -25.37 15.91 -3.85 -0.06 -25.44 16 24 N -0.68 -14.19 5.52 -445.42 -2.46 -16.65 16 25 C 0.04 0.76 6.43 44.99 0.29 1.05 16 26 C -0.17 -2.10 10.46 30.59 0.32 -1.78 16 27 C -0.17 -1.99 10.46 30.59 0.32 -1.68 16 28 C -0.10 -3.64 8.25 22.66 0.19 -3.45 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 35 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 36 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 37 H 0.12 3.72 8.07 -2.38 -0.02 3.70 16 38 H 0.08 3.31 3.55 -2.39 -0.01 3.30 16 39 H 0.43 9.10 8.82 -92.71 -0.82 8.28 16 40 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 41 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.17 1.43 6.40 -2.91 -0.02 1.41 16 43 H 0.42 5.16 6.86 -92.71 -0.64 4.53 16 44 H 0.11 2.80 7.40 -2.39 -0.02 2.78 16 45 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.10 4.86 5.82 -2.91 -0.02 4.85 16 Total: -1.00 -94.09 405.76 2.61 -91.48 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: -0.51 Total: 31.86 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 6.35 Total: 16.99 kcal Atomic # 7 Polarization: -125.38 SS G_CDS: -4.85 Total: -130.24 kcal Atomic # 8 Polarization: -54.79 SS G_CDS: -0.10 Total: -54.89 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.73 Total: 44.81 kcal Total: -94.09 2.61 -91.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049981085.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.057 kcal (2) G-P(sol) polarization free energy of solvation -94.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds