Wall clock time and date at job start Wed Apr 1 2020 03:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46709 * 2 1 4 4 N 1.46502 * 109.46813 * 180.02562 * 3 2 1 5 5 C 1.39285 * 125.81912 * 90.00013 * 4 3 2 6 6 C 1.38661 * 133.33388 * 0.06156 * 5 4 3 7 7 C 1.38102 * 119.84885 * 179.97438 * 6 5 4 8 8 C 1.38430 * 120.28835 * 0.02562 * 7 6 5 9 9 C 1.38113 * 120.28100 * 359.95329 * 8 7 6 10 10 C 1.38656 * 119.85128 * 0.04670 * 9 8 7 11 11 N 1.39285 * 133.33730 * 180.02562 * 10 9 8 12 12 C 1.46496 * 125.81754 * 359.95078 * 11 10 9 13 13 C 1.53006 * 109.46995 * 90.00408 * 12 11 10 14 14 C 1.50698 * 109.47184 * 180.02562 * 13 12 11 15 15 O 1.21282 * 120.00025 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00035 * 180.02562 * 14 13 12 17 17 C 1.46497 * 119.99801 * 359.97438 * 16 14 13 18 18 C 1.46504 * 119.99735 * 179.97438 * 16 14 13 19 19 C 1.50697 * 109.47527 * 89.99956 * 18 16 14 20 20 H 1.08009 * 119.99486 * 359.97438 * 19 18 16 21 21 C 1.37868 * 120.00223 * 179.97438 * 19 18 16 22 22 N 1.31519 * 120.00106 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00029 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47322 * 89.99966 * 23 21 19 25 25 H 1.48506 * 109.46867 * 209.99926 * 23 21 19 26 26 H 1.48505 * 109.46823 * 329.99594 * 23 21 19 27 27 C 1.34636 * 125.81920 * 270.32238 * 4 3 2 28 28 O 1.21696 * 125.16208 * 359.97438 * 27 4 3 29 29 H 1.09006 * 109.46760 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47065 * 299.99404 * 1 2 3 31 31 H 1.09001 * 109.46917 * 59.99981 * 1 2 3 32 32 H 1.09004 * 109.47478 * 240.00769 * 2 1 3 33 33 H 1.08998 * 109.47589 * 120.00323 * 2 1 3 34 34 H 1.08993 * 109.46871 * 60.00476 * 3 2 1 35 35 H 1.08993 * 109.47487 * 300.00019 * 3 2 1 36 36 H 1.08006 * 120.07457 * 359.94685 * 6 5 4 37 37 H 1.08005 * 119.85396 * 179.97438 * 7 6 5 38 38 H 1.08000 * 119.86460 * 179.97438 * 8 7 6 39 39 H 1.08000 * 120.07448 * 180.02562 * 9 8 7 40 40 H 1.09001 * 109.47464 * 330.00669 * 12 11 10 41 41 H 1.09001 * 109.47459 * 210.00384 * 12 11 10 42 42 H 1.09001 * 109.47002 * 299.99701 * 13 12 11 43 43 H 1.08993 * 109.46955 * 60.00138 * 13 12 11 44 44 H 1.08999 * 109.46908 * 90.00559 * 17 16 14 45 45 H 1.09000 * 109.47065 * 210.00008 * 17 16 14 46 46 H 1.08990 * 109.47304 * 330.00300 * 17 16 14 47 47 H 1.09004 * 109.46561 * 209.99850 * 18 16 14 48 48 H 1.08998 * 109.47073 * 329.99510 * 18 16 14 49 49 H 0.97000 * 119.99819 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.3196 1.4428 -1.1304 6 6 4.0581 1.4441 -2.4921 7 6 5.1048 1.4444 -3.3930 8 6 6.4137 1.4430 -2.9425 9 6 6.6841 1.4421 -1.5881 10 6 5.6399 1.4418 -0.6759 11 7 5.5865 1.4414 0.7159 12 6 6.7407 1.4403 1.6181 13 6 7.1435 2.8825 1.9327 14 6 8.3311 2.8814 2.8603 15 8 8.8082 1.8306 3.2334 16 7 8.8626 4.0481 3.2760 17 6 8.2860 5.3173 2.8257 18 6 10.0169 4.0469 4.1782 19 6 11.2877 4.0468 3.3682 20 1 11.2402 4.0471 2.2892 21 6 12.5107 4.0464 4.0045 22 7 12.5685 4.0465 5.3184 23 14 14.0860 4.0455 3.0004 24 1 14.5040 5.4453 2.7342 25 1 15.1548 3.3451 3.7570 26 1 13.8513 3.3453 1.7120 27 6 4.2933 1.4363 1.0908 28 8 3.8972 1.4301 2.2414 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.0381 1.4444 -2.8474 37 1 4.9012 1.4450 -4.4537 38 1 7.2270 1.4428 -3.6531 39 1 7.7066 1.4414 -1.2404 40 1 7.5747 0.9261 1.1406 41 1 6.4785 0.9263 2.5429 42 1 7.4057 3.3964 1.0079 43 1 6.3095 3.3966 2.4103 44 1 7.5102 5.6319 3.5237 45 1 9.0669 6.0766 2.7841 46 1 7.8520 5.1878 1.8344 47 1 9.9870 4.9366 4.8073 48 1 9.9862 3.1566 4.8063 49 1 13.4290 4.0466 5.7661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057814486.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:58 Heat of formation + Delta-G solvation = -13.336509 kcal Electronic energy + Delta-G solvation = -30145.679109 eV Core-core repulsion = 26073.565493 eV Total energy + Delta-G solvation = -4072.113616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.67599 -39.09504 -38.49722 -36.76145 -36.04670 -34.88692 -34.00718 -32.66249 -31.56573 -30.40432 -29.11914 -27.95531 -27.03253 -25.82377 -24.47430 -22.83647 -22.67082 -22.47473 -21.80415 -20.35547 -18.47747 -18.17234 -17.68946 -16.69994 -16.56852 -16.22481 -16.21629 -15.39404 -15.34861 -15.22168 -14.99924 -14.49551 -14.34742 -14.23641 -14.13451 -13.91458 -13.39555 -13.17447 -12.92325 -12.61757 -12.55833 -12.37268 -12.30889 -12.19387 -12.12489 -11.90228 -11.81011 -11.37150 -11.21343 -11.18531 -11.13011 -10.88250 -10.69631 -10.62470 -10.54109 -10.49676 -10.17378 -9.64438 -9.00480 -8.59928 -8.44605 -7.95764 -7.67529 -6.05116 -4.10173 0.97040 1.13833 1.93870 2.77428 2.99855 3.29019 3.34077 3.36733 3.41480 3.46997 3.96081 4.23591 4.32884 4.43715 4.50761 4.65904 4.73454 4.79119 4.88194 4.96645 4.97906 5.00852 5.13126 5.16488 5.21778 5.28726 5.30699 5.31781 5.48080 5.52815 5.59775 5.64406 5.69411 5.72670 5.83196 5.89338 5.94330 5.97678 6.13328 6.19741 6.24098 6.34086 6.41598 6.60909 7.02908 7.17063 7.43244 7.50940 7.90670 8.07389 8.21904 8.37099 8.87283 9.03846 9.54759 11.03008 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.002442 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.446139 B =11462.197367 C =12602.281610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.132 3.868 4 N -0.541 5.541 5 C 0.089 3.911 6 C -0.108 4.108 7 C -0.114 4.114 8 C -0.110 4.110 9 C -0.102 4.102 10 C 0.095 3.905 11 N -0.536 5.536 12 C 0.147 3.853 13 C -0.157 4.157 14 C 0.511 3.489 15 O -0.543 6.543 16 N -0.600 5.600 17 C 0.083 3.917 18 C 0.244 3.756 19 C -0.526 4.526 20 H 0.057 0.943 21 C 0.060 3.940 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.678 3.322 28 O -0.551 6.551 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.045 0.955 45 H 0.075 0.925 46 H 0.056 0.944 47 H 0.033 0.967 48 H 0.045 0.955 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.434 -3.638 -19.088 29.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C 0.011 3.989 4 N -0.262 5.262 5 C -0.013 4.013 6 C -0.129 4.129 7 C -0.134 4.134 8 C -0.130 4.130 9 C -0.124 4.124 10 C -0.006 4.006 11 N -0.257 5.257 12 C 0.026 3.974 13 C -0.198 4.198 14 C 0.296 3.704 15 O -0.421 6.421 16 N -0.332 5.332 17 C -0.061 4.061 18 C 0.125 3.875 19 C -0.565 4.565 20 H 0.075 0.925 21 C -0.142 4.142 22 N -0.533 5.533 23 Si 0.727 3.273 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.199 1.199 27 C 0.381 3.619 28 O -0.426 6.426 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.063 0.937 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.051 0.949 48 H 0.063 0.937 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.360 -4.170 -17.726 28.837 hybrid contribution 0.951 0.229 -0.493 1.095 sum -21.409 -3.942 -18.219 28.387 Atomic orbital electron populations 1.21680 0.94417 1.02365 1.02134 1.21937 0.96640 0.96343 1.03244 1.21629 0.74935 0.98132 1.04204 1.45217 1.06749 1.69727 1.04551 1.18088 0.88152 1.05711 0.89316 1.20006 1.00075 1.04287 0.88519 1.20835 0.91938 1.01327 0.99254 1.20880 0.97019 1.00814 0.94292 1.20209 0.97615 1.02760 0.91779 1.18141 0.94140 1.04898 0.83464 1.45356 1.06842 1.68750 1.04735 1.21366 0.85120 0.97001 0.93873 1.22034 0.98646 0.98181 1.00941 1.19983 0.84064 0.84458 0.81876 1.90685 1.62864 1.30793 1.57762 1.48147 1.32485 1.04456 1.48112 1.21650 0.98687 0.87442 0.98340 1.19319 0.81062 0.98538 0.88562 1.21410 0.90632 1.51147 0.93296 0.92476 1.24950 0.99182 0.95091 0.94973 1.69937 1.25589 1.50340 1.07447 0.86486 0.82746 0.77976 0.80136 1.20651 1.21067 1.19897 1.16025 0.80687 0.80551 0.84630 1.91049 1.76543 1.58211 1.16789 0.92096 0.92231 0.92435 0.91404 0.91116 0.88877 0.89389 0.85577 0.85175 0.84993 0.84924 0.88225 0.87912 0.88999 0.88997 0.93661 0.90637 0.92529 0.94943 0.93726 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.14 -1.08 6.26 -26.73 -0.17 -1.25 16 3 C 0.13 1.10 5.97 -4.04 -0.02 1.08 16 4 N -0.54 -6.24 2.78 -118.90 -0.33 -6.57 16 5 C 0.09 0.94 6.83 -83.80 -0.57 0.37 16 6 C -0.11 -0.84 10.02 -39.47 -0.40 -1.24 16 7 C -0.11 -0.79 10.03 -39.56 -0.40 -1.18 16 8 C -0.11 -0.86 10.03 -39.56 -0.40 -1.26 16 9 C -0.10 -1.02 10.02 -39.47 -0.40 -1.42 16 10 C 0.10 1.13 6.83 -83.80 -0.57 0.56 16 11 N -0.54 -7.47 2.78 -118.90 -0.33 -7.80 16 12 C 0.15 2.21 5.27 -4.04 -0.02 2.19 16 13 C -0.16 -2.42 4.58 -27.88 -0.13 -2.55 16 14 C 0.51 10.62 7.67 -10.99 -0.08 10.53 16 15 O -0.54 -13.46 15.56 5.56 0.09 -13.37 16 16 N -0.60 -12.90 2.86 -182.96 -0.52 -13.42 16 17 C 0.08 1.34 10.24 59.85 0.61 1.96 16 18 C 0.24 6.46 5.16 -5.19 -0.03 6.43 16 19 C -0.53 -14.92 9.38 -34.44 -0.32 -15.24 16 20 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 23 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.68 10.13 8.45 -87.17 -0.74 9.40 16 28 O -0.55 -9.95 17.48 5.19 0.09 -9.86 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.83 8.04 -51.93 -0.42 0.41 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 37 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.10 1.44 8.10 -51.93 -0.42 1.01 16 41 H 0.10 1.71 7.98 -51.93 -0.41 1.29 16 42 H 0.09 1.25 7.40 -51.93 -0.38 0.87 16 43 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 46 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 47 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 48 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 412.71 15.07 6.22 6.22 Total: -1.00 -35.74 412.71 -10.24 -45.98 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -7.81 Total: -1.56 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: -3.36 Total: 9.57 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.45 Total: -53.76 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.18 Total: -23.23 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.74 -10.24 -45.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057814486.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.645 kcal (2) G-P(sol) polarization free energy of solvation -35.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds