Wall clock time and date at job start Wed Apr 1 2020 03:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46709 * 2 1 4 4 N 1.46502 * 109.46813 * 180.02562 * 3 2 1 5 5 C 1.39285 * 125.81912 * 90.00013 * 4 3 2 6 6 C 1.38661 * 133.33388 * 0.06156 * 5 4 3 7 7 C 1.38102 * 119.84885 * 179.97438 * 6 5 4 8 8 C 1.38430 * 120.28835 * 0.02562 * 7 6 5 9 9 C 1.38113 * 120.28100 * 359.95329 * 8 7 6 10 10 C 1.38656 * 119.85128 * 0.04670 * 9 8 7 11 11 N 1.39285 * 133.33730 * 180.02562 * 10 9 8 12 12 C 1.46496 * 125.81754 * 359.95078 * 11 10 9 13 13 C 1.53006 * 109.46995 * 90.00408 * 12 11 10 14 14 C 1.50698 * 109.47184 * 180.02562 * 13 12 11 15 15 O 1.21282 * 120.00025 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00035 * 180.02562 * 14 13 12 17 17 C 1.46497 * 119.99801 * 359.97438 * 16 14 13 18 18 C 1.46504 * 119.99735 * 179.97438 * 16 14 13 19 19 C 1.50697 * 109.47527 * 89.99956 * 18 16 14 20 20 H 1.08009 * 119.99486 * 359.97438 * 19 18 16 21 21 C 1.37868 * 120.00223 * 179.97438 * 19 18 16 22 22 N 1.31519 * 120.00106 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00029 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47322 * 89.99966 * 23 21 19 25 25 H 1.48506 * 109.46867 * 209.99926 * 23 21 19 26 26 H 1.48505 * 109.46823 * 329.99594 * 23 21 19 27 27 C 1.34636 * 125.81920 * 270.32238 * 4 3 2 28 28 O 1.21696 * 125.16208 * 359.97438 * 27 4 3 29 29 H 1.09006 * 109.46760 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47065 * 299.99404 * 1 2 3 31 31 H 1.09001 * 109.46917 * 59.99981 * 1 2 3 32 32 H 1.09004 * 109.47478 * 240.00769 * 2 1 3 33 33 H 1.08998 * 109.47589 * 120.00323 * 2 1 3 34 34 H 1.08993 * 109.46871 * 60.00476 * 3 2 1 35 35 H 1.08993 * 109.47487 * 300.00019 * 3 2 1 36 36 H 1.08006 * 120.07457 * 359.94685 * 6 5 4 37 37 H 1.08005 * 119.85396 * 179.97438 * 7 6 5 38 38 H 1.08000 * 119.86460 * 179.97438 * 8 7 6 39 39 H 1.08000 * 120.07448 * 180.02562 * 9 8 7 40 40 H 1.09001 * 109.47464 * 330.00669 * 12 11 10 41 41 H 1.09001 * 109.47459 * 210.00384 * 12 11 10 42 42 H 1.09001 * 109.47002 * 299.99701 * 13 12 11 43 43 H 1.08993 * 109.46955 * 60.00138 * 13 12 11 44 44 H 1.08999 * 109.46908 * 90.00559 * 17 16 14 45 45 H 1.09000 * 109.47065 * 210.00008 * 17 16 14 46 46 H 1.08990 * 109.47304 * 330.00300 * 17 16 14 47 47 H 1.09004 * 109.46561 * 209.99850 * 18 16 14 48 48 H 1.08998 * 109.47073 * 329.99510 * 18 16 14 49 49 H 0.97000 * 119.99819 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.3196 1.4428 -1.1304 6 6 4.0581 1.4441 -2.4921 7 6 5.1048 1.4444 -3.3930 8 6 6.4137 1.4430 -2.9425 9 6 6.6841 1.4421 -1.5881 10 6 5.6399 1.4418 -0.6759 11 7 5.5865 1.4414 0.7159 12 6 6.7407 1.4403 1.6181 13 6 7.1435 2.8825 1.9327 14 6 8.3311 2.8814 2.8603 15 8 8.8082 1.8306 3.2334 16 7 8.8626 4.0481 3.2760 17 6 8.2860 5.3173 2.8257 18 6 10.0169 4.0469 4.1782 19 6 11.2877 4.0468 3.3682 20 1 11.2402 4.0471 2.2892 21 6 12.5107 4.0464 4.0045 22 7 12.5685 4.0465 5.3184 23 14 14.0860 4.0455 3.0004 24 1 14.5040 5.4453 2.7342 25 1 15.1548 3.3451 3.7570 26 1 13.8513 3.3453 1.7120 27 6 4.2933 1.4363 1.0908 28 8 3.8972 1.4301 2.2414 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.0381 1.4444 -2.8474 37 1 4.9012 1.4450 -4.4537 38 1 7.2270 1.4428 -3.6531 39 1 7.7066 1.4414 -1.2404 40 1 7.5747 0.9261 1.1406 41 1 6.4785 0.9263 2.5429 42 1 7.4057 3.3964 1.0079 43 1 6.3095 3.3966 2.4103 44 1 7.5102 5.6319 3.5237 45 1 9.0669 6.0766 2.7841 46 1 7.8520 5.1878 1.8344 47 1 9.9870 4.9366 4.8073 48 1 9.9862 3.1566 4.8063 49 1 13.4290 4.0466 5.7661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057814486.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:57 Heat of formation + Delta-G solvation = -33.903266 kcal Electronic energy + Delta-G solvation = -30146.570951 eV Core-core repulsion = 26073.565493 eV Total energy + Delta-G solvation = -4073.005457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.57891 -40.77537 -39.36948 -37.65674 -37.03715 -36.65765 -34.92832 -34.65605 -32.67547 -31.14905 -30.15346 -29.55505 -27.97198 -27.31900 -25.88441 -24.22412 -23.53412 -23.38546 -22.65899 -21.25367 -20.11482 -18.97565 -18.72812 -18.65201 -17.84647 -17.53033 -17.17542 -17.03373 -16.69692 -16.16456 -16.12494 -15.93664 -15.33033 -15.15876 -14.87955 -14.75741 -14.67459 -14.35980 -14.07546 -13.98472 -13.77377 -13.68867 -13.49365 -13.24903 -13.09722 -13.07739 -12.91656 -12.84304 -12.54662 -12.46695 -12.39323 -12.22035 -11.98891 -11.80252 -11.72608 -11.63254 -11.53864 -11.35280 -10.73925 -10.65282 -9.49473 -9.33529 -8.82232 -8.23433 -6.38720 0.28174 0.44496 0.98794 1.36730 1.40043 1.50319 1.70157 1.71771 2.08545 2.32583 2.46216 2.81708 3.06291 3.47396 3.54212 3.61403 3.76332 3.80081 3.91965 4.03268 4.18210 4.20198 4.24539 4.31543 4.37651 4.43148 4.45007 4.53938 4.57433 4.65332 4.70910 4.74362 4.81992 4.88957 4.92893 4.97282 5.08160 5.10425 5.18759 5.20228 5.29123 5.37181 5.52453 5.55779 5.62185 5.71315 5.78810 5.83733 6.03235 6.30735 6.63522 6.72042 7.03053 7.23635 7.38614 8.84100 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.002442 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.446139 B =11462.197367 C =12602.281610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.126 3.874 4 N -0.534 5.534 5 C 0.074 3.926 6 C -0.099 4.099 7 C -0.101 4.101 8 C -0.105 4.105 9 C -0.115 4.115 10 C 0.062 3.938 11 N -0.538 5.538 12 C 0.155 3.845 13 C -0.133 4.133 14 C 0.503 3.497 15 O -0.593 6.593 16 N -0.608 5.608 17 C 0.078 3.922 18 C 0.257 3.743 19 C -0.541 4.541 20 H 0.057 0.943 21 C 0.004 3.996 22 N -0.930 5.930 23 Si 0.972 3.028 24 H -0.263 1.263 25 H -0.282 1.282 26 H -0.269 1.269 27 C 0.662 3.338 28 O -0.599 6.599 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.157 0.843 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.129 0.871 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.023 0.977 48 H -0.002 1.002 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.479 -2.640 -23.927 33.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.006 3.994 4 N -0.255 5.255 5 C -0.026 4.026 6 C -0.120 4.120 7 C -0.120 4.120 8 C -0.125 4.125 9 C -0.136 4.136 10 C -0.038 4.038 11 N -0.258 5.258 12 C 0.033 3.967 13 C -0.173 4.173 14 C 0.292 3.708 15 O -0.474 6.474 16 N -0.339 5.339 17 C -0.064 4.064 18 C 0.136 3.864 19 C -0.580 4.580 20 H 0.075 0.925 21 C -0.195 4.195 22 N -0.570 5.570 23 Si 0.796 3.204 24 H -0.188 1.188 25 H -0.208 1.208 26 H -0.194 1.194 27 C 0.365 3.635 28 O -0.479 6.479 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.142 0.858 36 H 0.175 0.825 37 H 0.185 0.815 38 H 0.175 0.825 39 H 0.147 0.853 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.138 0.862 43 H 0.119 0.881 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.110 0.890 47 H 0.041 0.959 48 H 0.016 0.984 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.450 -3.137 -22.650 32.753 hybrid contribution 1.232 -0.104 0.905 1.533 sum -22.217 -3.240 -21.744 31.256 Atomic orbital electron populations 1.21658 0.92576 1.02871 1.02985 1.21871 0.98121 0.95563 1.01953 1.21927 0.73291 0.98847 1.05354 1.45284 1.07625 1.68596 1.03960 1.18421 0.87274 1.06794 0.90111 1.20437 1.02069 1.02521 0.86997 1.21315 0.91051 0.98757 1.00920 1.21262 0.98554 0.99121 0.93514 1.20393 0.97115 1.03396 0.92673 1.18470 0.95673 1.07326 0.82312 1.45186 1.06044 1.68834 1.05761 1.21082 0.85785 0.96489 0.93349 1.21855 0.96050 0.98910 1.00512 1.20855 0.84835 0.83401 0.81759 1.90653 1.64630 1.32581 1.59568 1.48174 1.31443 1.06839 1.47454 1.21933 0.98970 0.84806 1.00688 1.18807 0.82941 0.95768 0.88860 1.21671 0.91642 1.51279 0.93361 0.92495 1.25927 1.02986 0.94404 0.96140 1.70067 1.26688 1.50985 1.09234 0.85355 0.77936 0.78808 0.78346 1.18782 1.20769 1.19404 1.16274 0.81291 0.81032 0.84854 1.90992 1.77404 1.60697 1.18763 0.91793 0.92647 0.90288 0.90718 0.94345 0.90038 0.85828 0.82533 0.81528 0.82537 0.85284 0.88066 0.90599 0.86178 0.88071 0.91596 0.90948 0.88990 0.95857 0.98397 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.91 71.98 0.71 -0.61 16 2 C -0.14 -1.95 6.26 30.60 0.19 -1.76 16 3 C 0.13 1.94 5.97 86.38 0.52 2.46 16 4 N -0.53 -12.02 2.78 -648.40 -1.81 -13.82 16 5 C 0.07 1.43 6.83 38.39 0.26 1.69 16 6 C -0.10 -1.13 10.02 22.34 0.22 -0.90 16 7 C -0.10 -0.89 10.03 22.28 0.22 -0.66 16 8 C -0.11 -1.24 10.03 22.29 0.22 -1.01 16 9 C -0.11 -2.09 10.02 22.34 0.22 -1.86 16 10 C 0.06 1.42 6.83 38.39 0.26 1.68 16 11 N -0.54 -15.36 2.78 -648.39 -1.81 -17.16 16 12 C 0.16 4.89 5.27 86.38 0.45 5.35 16 13 C -0.13 -4.10 4.58 29.85 0.14 -3.97 16 14 C 0.50 21.64 7.67 87.66 0.67 22.31 16 15 O -0.59 -31.19 15.56 -3.04 -0.05 -31.24 16 16 N -0.61 -26.71 2.86 -851.15 -2.43 -29.15 16 17 C 0.08 2.44 10.24 127.77 1.31 3.75 16 18 C 0.26 14.26 5.16 85.63 0.44 14.70 16 19 C -0.54 -31.39 9.38 25.60 0.24 -31.15 16 20 H 0.06 3.23 7.81 -2.91 -0.02 3.20 16 21 C 0.00 0.25 5.46 84.65 0.46 0.71 16 22 N -0.93 -57.00 13.29 21.44 0.28 -56.72 16 23 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 24 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 C 0.66 20.57 8.45 179.14 1.51 22.09 16 28 O -0.60 -23.15 17.48 -4.34 -0.08 -23.22 16 29 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 1.46 8.04 -2.39 -0.02 1.44 16 35 H 0.12 1.00 8.14 -2.39 -0.02 0.99 16 36 H 0.16 0.82 8.06 -2.91 -0.02 0.79 16 37 H 0.17 0.33 8.06 -2.91 -0.02 0.31 16 38 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 39 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.10 3.09 8.10 -2.39 -0.02 3.07 16 41 H 0.08 2.78 7.98 -2.39 -0.02 2.76 16 42 H 0.12 3.05 7.40 -2.39 -0.02 3.04 16 43 H 0.10 3.00 8.11 -2.39 -0.02 2.98 16 44 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 46 H 0.09 2.21 6.44 -2.39 -0.02 2.20 16 47 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 48 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 16 49 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -83.84 412.71 5.15 -78.70 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.93 Total: 12.90 kcal Atomic # 6 Polarization: 24.73 SS G_CDS: 8.07 Total: 32.80 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -5.76 Total: -116.85 kcal Atomic # 8 Polarization: -54.33 SS G_CDS: -0.12 Total: -54.46 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -83.84 5.15 -78.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057814486.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.794 kcal (2) G-P(sol) polarization free energy of solvation -83.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds