Wall clock time and date at job start Wed Apr 1 2020 03:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 N 1.46500 * 109.46998 * 179.97438 * 3 2 1 5 5 C 1.39285 * 125.82170 * 89.99868 * 4 3 2 6 6 C 1.38662 * 133.32800 * 359.95641 * 5 4 3 7 7 C 1.38110 * 119.84482 * 179.97438 * 6 5 4 8 8 C 1.38439 * 120.28718 * 0.05027 * 7 6 5 9 9 C 1.38108 * 120.27936 * 359.95182 * 8 7 6 10 10 C 1.38653 * 119.85293 * 0.02562 * 9 8 7 11 11 N 1.39285 * 133.33766 * 179.97438 * 10 9 8 12 12 C 1.46507 * 125.81423 * 0.06020 * 11 10 9 13 13 C 1.52999 * 109.47276 * 90.00046 * 12 11 10 14 14 C 1.50695 * 109.46842 * 179.97438 * 13 12 11 15 15 O 1.21283 * 120.00668 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99920 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00124 * 179.97438 * 16 14 13 18 18 H 1.08994 * 109.47413 * 325.00240 * 17 16 14 19 19 C 1.53007 * 109.47231 * 85.00529 * 17 16 14 20 20 C 1.50707 * 109.47227 * 205.00222 * 17 16 14 21 21 H 1.07993 * 119.99897 * 359.97438 * 20 17 16 22 22 C 1.37879 * 119.99751 * 180.02562 * 20 17 16 23 23 N 1.31513 * 120.00145 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 119.99581 * 179.97438 * 22 20 17 25 25 H 1.48508 * 109.47097 * 89.99832 * 24 22 20 26 26 H 1.48497 * 109.47082 * 209.99621 * 24 22 20 27 27 H 1.48500 * 109.47295 * 329.99829 * 24 22 20 28 28 C 1.34641 * 108.36827 * 179.78124 * 11 10 9 29 29 O 1.21685 * 125.16536 * 180.26524 * 28 11 10 30 30 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 32 32 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 33 33 H 1.09000 * 109.47486 * 240.00171 * 2 1 3 34 34 H 1.09001 * 109.47362 * 119.99448 * 2 1 3 35 35 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 36 36 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 37 37 H 1.07998 * 120.07749 * 0.02562 * 6 5 4 38 38 H 1.08008 * 119.85449 * 180.02562 * 7 6 5 39 39 H 1.07995 * 119.85873 * 179.97438 * 8 7 6 40 40 H 1.08005 * 120.07343 * 180.02562 * 9 8 7 41 41 H 1.09006 * 109.46500 * 209.99789 * 12 11 10 42 42 H 1.08997 * 109.47050 * 329.99550 * 12 11 10 43 43 H 1.09000 * 109.46755 * 299.99934 * 13 12 11 44 44 H 1.08995 * 109.46974 * 59.99860 * 13 12 11 45 45 H 0.97003 * 120.00215 * 0.02562 * 16 14 13 46 46 H 1.08992 * 109.47244 * 179.97438 * 19 17 16 47 47 H 1.09003 * 109.46224 * 299.99961 * 19 17 16 48 48 H 1.08994 * 109.47157 * 59.99555 * 19 17 16 49 49 H 0.97001 * 119.99549 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.3205 1.4426 -1.1284 6 6 4.0601 1.4415 -2.4904 7 6 5.1076 1.4422 -3.3904 8 6 6.4163 1.4429 -2.9388 9 6 6.6854 1.4439 -1.5842 10 6 5.6404 1.4436 -0.6729 11 7 5.5858 1.4440 0.7189 12 6 6.7393 1.4459 1.6221 13 6 7.1388 2.8891 1.9362 14 6 8.3249 2.8909 2.8657 15 8 8.8034 1.8414 3.2406 16 7 8.8540 4.0590 3.2806 17 6 10.0067 4.0609 4.1847 18 1 9.9297 3.2197 4.8734 19 6 11.2951 3.9358 3.3688 20 6 10.0302 5.3493 4.9661 21 1 9.2635 6.0926 4.8050 22 6 11.0313 5.5796 5.8859 23 7 11.9653 4.6747 6.0816 24 14 11.0607 7.1769 6.8539 25 1 10.2862 7.0090 8.1098 26 1 12.4650 7.5310 7.1820 27 1 10.4543 8.2605 6.0395 28 6 4.2923 1.4484 1.0928 29 8 3.8953 1.4544 2.2430 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.6765 1.9563 -0.8899 36 1 1.6765 1.9564 0.8900 37 1 3.0405 1.4410 -2.8464 38 1 4.9049 1.4419 -4.4513 39 1 7.2301 1.4430 -3.6487 40 1 7.7076 1.4448 -1.2355 41 1 6.4773 0.9319 2.5470 42 1 7.5748 0.9331 1.1456 43 1 7.4006 3.4030 1.0113 44 1 6.3033 3.4018 2.4127 45 1 8.4712 4.8985 2.9811 46 1 12.1527 3.9376 4.0414 47 1 11.2780 3.0039 2.8036 48 1 11.3721 4.7770 2.6800 49 1 12.6693 4.8366 6.7290 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318488.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:10 Heat of formation + Delta-G solvation = -23.946045 kcal Electronic energy + Delta-G solvation = -29842.180244 eV Core-core repulsion = 25769.606564 eV Total energy + Delta-G solvation = -4072.573680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.69275 -39.02386 -38.51584 -36.77866 -36.06757 -34.88538 -33.98457 -32.42344 -31.61297 -30.44271 -29.30309 -28.63787 -27.06247 -25.27285 -24.44340 -22.85523 -22.61077 -22.07928 -21.05576 -20.29345 -19.42118 -18.19421 -17.75783 -17.21835 -16.47423 -16.23698 -15.90638 -15.39353 -15.33271 -15.18466 -14.91583 -14.50615 -14.34012 -14.25908 -14.12565 -13.89574 -13.21202 -13.16677 -12.82515 -12.74259 -12.56498 -12.50794 -12.33978 -12.29086 -11.89458 -11.70118 -11.40743 -11.20074 -11.16273 -11.08451 -10.96245 -10.75943 -10.68995 -10.60823 -10.53335 -10.31669 -10.24134 -9.12255 -9.05540 -8.62639 -8.55319 -7.97714 -7.93900 -6.12675 -4.21875 0.94493 1.11457 1.92150 2.76320 2.98091 3.24863 3.31146 3.32363 3.34657 3.44457 4.07385 4.22729 4.32138 4.38818 4.50397 4.64150 4.71826 4.78223 4.87681 4.93424 4.96464 4.99734 5.13540 5.17436 5.19660 5.27140 5.31269 5.37877 5.49938 5.59327 5.63366 5.65472 5.72035 5.82844 5.88883 5.94112 6.11148 6.21201 6.32288 6.39014 6.58756 6.81030 6.94446 7.13599 7.15176 7.43601 7.53854 7.68438 7.90325 8.06201 8.14207 8.63379 8.76445 9.08256 9.45502 10.93311 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015802 B = 0.002213 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.533129 B =12647.607849 C =13681.879356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.132 3.868 4 N -0.541 5.541 5 C 0.089 3.911 6 C -0.107 4.107 7 C -0.114 4.114 8 C -0.111 4.111 9 C -0.103 4.103 10 C 0.095 3.905 11 N -0.537 5.537 12 C 0.149 3.851 13 C -0.160 4.160 14 C 0.508 3.492 15 O -0.557 6.557 16 N -0.707 5.707 17 C 0.263 3.737 18 H 0.049 0.951 19 C -0.146 4.146 20 C -0.534 4.534 21 H 0.061 0.939 22 C 0.066 3.934 23 N -0.883 5.883 24 Si 0.902 3.098 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.678 3.322 29 O -0.549 6.549 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.389 0.611 46 H 0.090 0.910 47 H 0.015 0.985 48 H 0.026 0.974 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.788 -6.819 -21.876 29.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.011 3.989 4 N -0.262 5.262 5 C -0.012 4.012 6 C -0.129 4.129 7 C -0.134 4.134 8 C -0.130 4.130 9 C -0.124 4.124 10 C -0.007 4.007 11 N -0.257 5.257 12 C 0.028 3.972 13 C -0.202 4.202 14 C 0.292 3.708 15 O -0.437 6.437 16 N -0.354 5.354 17 C 0.162 3.838 18 H 0.067 0.933 19 C -0.205 4.205 20 C -0.572 4.572 21 H 0.079 0.921 22 C -0.138 4.138 23 N -0.521 5.521 24 Si 0.730 3.270 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.199 1.199 28 C 0.381 3.619 29 O -0.424 6.424 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.222 0.778 46 H 0.109 0.891 47 H 0.034 0.966 48 H 0.045 0.955 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.570 -7.586 -20.482 28.669 hybrid contribution -0.099 1.371 0.419 1.437 sum -18.669 -6.215 -20.062 28.101 Atomic orbital electron populations 1.21681 0.94407 1.02370 1.02155 1.21932 0.96645 0.96314 1.03225 1.21637 0.74912 0.98154 1.04243 1.45222 1.06768 1.69712 1.04544 1.18093 0.88162 1.05619 0.89336 1.20014 1.00099 1.04214 0.88529 1.20840 0.91935 1.01317 0.99264 1.20873 0.97021 1.00883 0.94272 1.20181 0.97515 1.02947 0.91777 1.18142 0.94163 1.04903 0.83468 1.45360 1.06848 1.68822 1.04712 1.21342 0.85129 0.96912 0.93845 1.22033 0.98875 0.98355 1.00912 1.20093 0.84074 0.84960 0.81711 1.90671 1.63215 1.31408 1.58356 1.46530 1.33731 1.06718 1.48414 1.18767 0.80138 0.98128 0.86816 0.93312 1.22070 1.02346 0.96633 0.99430 1.21216 1.11381 1.02473 1.22158 0.92091 1.24894 0.95132 0.97101 0.96637 1.69901 1.13737 1.34019 1.34415 0.86437 0.77312 0.83057 0.80223 1.20539 1.21057 1.19866 1.16033 0.80699 0.80552 0.84638 1.91056 1.76467 1.58057 1.16817 0.92090 0.92213 0.92433 0.91410 0.91123 0.89390 0.88843 0.85562 0.85170 0.85010 0.84993 0.87889 0.88305 0.89013 0.88789 0.77839 0.89116 0.96638 0.95489 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.14 -1.07 6.26 -26.73 -0.17 -1.24 16 3 C 0.13 1.10 5.98 -4.04 -0.02 1.07 16 4 N -0.54 -6.19 2.78 -118.90 -0.33 -6.53 16 5 C 0.09 0.93 6.83 -83.80 -0.57 0.35 16 6 C -0.11 -0.81 10.02 -39.47 -0.40 -1.21 16 7 C -0.11 -0.75 10.03 -39.55 -0.40 -1.14 16 8 C -0.11 -0.80 10.03 -39.55 -0.40 -1.20 16 9 C -0.10 -0.96 10.02 -39.48 -0.40 -1.36 16 10 C 0.09 1.09 6.83 -83.80 -0.57 0.52 16 11 N -0.54 -7.28 2.78 -118.90 -0.33 -7.61 16 12 C 0.15 2.13 5.26 -4.04 -0.02 2.11 16 13 C -0.16 -2.36 6.02 -27.89 -0.17 -2.53 16 14 C 0.51 9.97 7.79 -10.99 -0.09 9.89 16 15 O -0.56 -12.97 15.65 5.55 0.09 -12.88 16 16 N -0.71 -14.75 5.07 -54.93 -0.28 -15.03 16 17 C 0.26 6.74 2.56 -69.08 -0.18 6.56 16 18 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 19 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 20 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 16 21 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 22 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 23 N -0.88 -25.02 11.32 55.43 0.63 -24.40 16 24 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.68 10.07 8.45 -87.16 -0.74 9.34 16 29 O -0.55 -9.96 17.48 5.20 0.09 -9.87 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.84 8.03 -51.93 -0.42 0.42 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 39 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 41 H 0.10 1.67 8.00 -51.93 -0.42 1.25 16 42 H 0.10 1.32 8.10 -51.93 -0.42 0.90 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.39 7.07 8.54 -40.82 -0.35 6.72 16 46 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 47 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 411.23 15.07 6.20 6.20 Total: -1.00 -33.66 411.23 -10.52 -44.19 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.77 Total: 5.56 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -3.79 Total: 4.55 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.31 Total: -53.56 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: 0.18 Total: -22.76 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.66 -10.52 -44.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318488.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.239 kcal (2) G-P(sol) polarization free energy of solvation -33.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds