Wall clock time and date at job start Wed Apr 1 2020 03:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 N 1.46500 * 109.46998 * 179.97438 * 3 2 1 5 5 C 1.39285 * 125.82170 * 89.99868 * 4 3 2 6 6 C 1.38662 * 133.32800 * 359.95641 * 5 4 3 7 7 C 1.38110 * 119.84482 * 179.97438 * 6 5 4 8 8 C 1.38439 * 120.28718 * 0.05027 * 7 6 5 9 9 C 1.38108 * 120.27936 * 359.95182 * 8 7 6 10 10 C 1.38653 * 119.85293 * 0.02562 * 9 8 7 11 11 N 1.39285 * 133.33766 * 179.97438 * 10 9 8 12 12 C 1.46507 * 125.81423 * 0.06020 * 11 10 9 13 13 C 1.52999 * 109.47276 * 90.00046 * 12 11 10 14 14 C 1.50695 * 109.46842 * 179.97438 * 13 12 11 15 15 O 1.21283 * 120.00668 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99920 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00124 * 179.97438 * 16 14 13 18 18 H 1.08994 * 109.47413 * 325.00240 * 17 16 14 19 19 C 1.53007 * 109.47231 * 85.00529 * 17 16 14 20 20 C 1.50707 * 109.47227 * 205.00222 * 17 16 14 21 21 H 1.07993 * 119.99897 * 359.97438 * 20 17 16 22 22 C 1.37879 * 119.99751 * 180.02562 * 20 17 16 23 23 N 1.31513 * 120.00145 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 119.99581 * 179.97438 * 22 20 17 25 25 H 1.48508 * 109.47097 * 89.99832 * 24 22 20 26 26 H 1.48497 * 109.47082 * 209.99621 * 24 22 20 27 27 H 1.48500 * 109.47295 * 329.99829 * 24 22 20 28 28 C 1.34641 * 108.36827 * 179.78124 * 11 10 9 29 29 O 1.21685 * 125.16536 * 180.26524 * 28 11 10 30 30 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 32 32 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 33 33 H 1.09000 * 109.47486 * 240.00171 * 2 1 3 34 34 H 1.09001 * 109.47362 * 119.99448 * 2 1 3 35 35 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 36 36 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 37 37 H 1.07998 * 120.07749 * 0.02562 * 6 5 4 38 38 H 1.08008 * 119.85449 * 180.02562 * 7 6 5 39 39 H 1.07995 * 119.85873 * 179.97438 * 8 7 6 40 40 H 1.08005 * 120.07343 * 180.02562 * 9 8 7 41 41 H 1.09006 * 109.46500 * 209.99789 * 12 11 10 42 42 H 1.08997 * 109.47050 * 329.99550 * 12 11 10 43 43 H 1.09000 * 109.46755 * 299.99934 * 13 12 11 44 44 H 1.08995 * 109.46974 * 59.99860 * 13 12 11 45 45 H 0.97003 * 120.00215 * 0.02562 * 16 14 13 46 46 H 1.08992 * 109.47244 * 179.97438 * 19 17 16 47 47 H 1.09003 * 109.46224 * 299.99961 * 19 17 16 48 48 H 1.08994 * 109.47157 * 59.99555 * 19 17 16 49 49 H 0.97001 * 119.99549 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.3205 1.4426 -1.1284 6 6 4.0601 1.4415 -2.4904 7 6 5.1076 1.4422 -3.3904 8 6 6.4163 1.4429 -2.9388 9 6 6.6854 1.4439 -1.5842 10 6 5.6404 1.4436 -0.6729 11 7 5.5858 1.4440 0.7189 12 6 6.7393 1.4459 1.6221 13 6 7.1388 2.8891 1.9362 14 6 8.3249 2.8909 2.8657 15 8 8.8034 1.8414 3.2406 16 7 8.8540 4.0590 3.2806 17 6 10.0067 4.0609 4.1847 18 1 9.9297 3.2197 4.8734 19 6 11.2951 3.9358 3.3688 20 6 10.0302 5.3493 4.9661 21 1 9.2635 6.0926 4.8050 22 6 11.0313 5.5796 5.8859 23 7 11.9653 4.6747 6.0816 24 14 11.0607 7.1769 6.8539 25 1 10.2862 7.0090 8.1098 26 1 12.4650 7.5310 7.1820 27 1 10.4543 8.2605 6.0395 28 6 4.2923 1.4484 1.0928 29 8 3.8953 1.4544 2.2430 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.6765 1.9563 -0.8899 36 1 1.6765 1.9564 0.8900 37 1 3.0405 1.4410 -2.8464 38 1 4.9049 1.4419 -4.4513 39 1 7.2301 1.4430 -3.6487 40 1 7.7076 1.4448 -1.2355 41 1 6.4773 0.9319 2.5470 42 1 7.5748 0.9331 1.1456 43 1 7.4006 3.4030 1.0113 44 1 6.3033 3.4018 2.4127 45 1 8.4712 4.8985 2.9811 46 1 12.1527 3.9376 4.0414 47 1 11.2780 3.0039 2.8036 48 1 11.3721 4.7770 2.6800 49 1 12.6693 4.8366 6.7290 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318488.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:09 Heat of formation + Delta-G solvation = -43.548345 kcal Electronic energy + Delta-G solvation = -29843.030263 eV Core-core repulsion = 25769.606564 eV Total energy + Delta-G solvation = -4073.423699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.57522 -40.69176 -39.37019 -37.67817 -37.05358 -36.72620 -34.81801 -34.35659 -32.71994 -31.23134 -30.72243 -29.73469 -27.88578 -27.35337 -25.57337 -23.54854 -23.39915 -23.10658 -22.51122 -21.30108 -21.10987 -19.09324 -18.96654 -18.47125 -17.70361 -17.37329 -17.16277 -17.11051 -16.55206 -16.16442 -15.99452 -15.93291 -15.30781 -15.04345 -14.90356 -14.85152 -14.58024 -14.47175 -14.17838 -14.06592 -13.73001 -13.65904 -13.22067 -13.09099 -13.00395 -12.91775 -12.89652 -12.76725 -12.47520 -12.39362 -12.27535 -12.14763 -11.98516 -11.80708 -11.64489 -11.55397 -11.35737 -11.13394 -10.82356 -10.60592 -9.80098 -9.33095 -8.82030 -8.19713 -6.37194 0.28706 0.44977 0.99226 1.42999 1.43826 1.54375 1.70931 1.71707 2.10686 2.35324 2.63557 2.82573 3.10529 3.50425 3.55065 3.66429 3.79807 3.89489 3.95390 4.06158 4.20392 4.22335 4.29757 4.35513 4.40038 4.45714 4.54956 4.56851 4.72672 4.74475 4.75212 4.81322 4.92119 4.93346 5.07810 5.07895 5.09715 5.18831 5.29392 5.36793 5.41619 5.56043 5.57781 5.62492 5.66674 5.71735 5.84036 5.87608 6.08369 6.31019 6.70026 6.88325 7.03107 7.29154 7.48056 8.86501 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015802 B = 0.002213 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.533129 B =12647.607849 C =13681.879356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.125 3.875 4 N -0.535 5.535 5 C 0.073 3.927 6 C -0.101 4.101 7 C -0.102 4.102 8 C -0.105 4.105 9 C -0.113 4.113 10 C 0.062 3.938 11 N -0.538 5.538 12 C 0.155 3.845 13 C -0.138 4.138 14 C 0.507 3.493 15 O -0.596 6.596 16 N -0.704 5.704 17 C 0.268 3.732 18 H -0.003 1.003 19 C -0.132 4.132 20 C -0.548 4.548 21 H 0.071 0.929 22 C 0.013 3.987 23 N -0.916 5.916 24 Si 0.973 3.027 25 H -0.280 1.280 26 H -0.282 1.282 27 H -0.260 1.260 28 C 0.661 3.339 29 O -0.600 6.600 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.155 0.845 38 H 0.167 0.833 39 H 0.159 0.841 40 H 0.134 0.866 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.124 0.876 44 H 0.096 0.904 45 H 0.405 0.595 46 H 0.066 0.934 47 H 0.016 0.984 48 H 0.042 0.958 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.224 -5.295 -25.738 33.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.005 3.995 4 N -0.255 5.255 5 C -0.028 4.028 6 C -0.122 4.122 7 C -0.121 4.121 8 C -0.124 4.124 9 C -0.134 4.134 10 C -0.038 4.038 11 N -0.258 5.258 12 C 0.033 3.967 13 C -0.179 4.179 14 C 0.293 3.707 15 O -0.478 6.478 16 N -0.352 5.352 17 C 0.165 3.835 18 H 0.015 0.985 19 C -0.191 4.191 20 C -0.586 4.586 21 H 0.090 0.910 22 C -0.187 4.187 23 N -0.554 5.554 24 Si 0.797 3.203 25 H -0.206 1.206 26 H -0.207 1.207 27 H -0.184 1.184 28 C 0.364 3.636 29 O -0.480 6.480 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.141 0.859 36 H 0.098 0.902 37 H 0.173 0.827 38 H 0.184 0.816 39 H 0.176 0.824 40 H 0.152 0.848 41 H 0.093 0.907 42 H 0.125 0.875 43 H 0.142 0.858 44 H 0.115 0.885 45 H 0.240 0.760 46 H 0.085 0.915 47 H 0.035 0.965 48 H 0.061 0.939 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.040 -6.048 -24.439 32.178 hybrid contribution 0.347 0.814 1.462 1.708 sum -19.693 -5.234 -22.977 30.711 Atomic orbital electron populations 1.21660 0.92607 1.02894 1.02955 1.21862 0.98088 0.95486 1.01981 1.21920 0.73395 0.98901 1.05259 1.45284 1.07612 1.68603 1.04039 1.18439 0.87379 1.06849 0.90094 1.20432 1.02056 1.02626 0.87048 1.21322 0.91139 0.98778 1.00876 1.21276 0.98488 0.99072 0.93593 1.20408 0.97179 1.03250 0.92550 1.18488 0.95673 1.07337 0.82302 1.45198 1.06016 1.68806 1.05801 1.21106 0.85878 0.96392 0.93305 1.21863 0.96221 0.99065 1.00751 1.20840 0.84631 0.83773 0.81430 1.90653 1.64632 1.32793 1.59756 1.46292 1.32922 1.08085 1.47924 1.18385 0.82098 0.96004 0.87020 0.98464 1.21875 1.01019 0.97267 0.98918 1.21541 1.11710 1.02848 1.22549 0.91041 1.25808 0.94719 1.00516 0.97626 1.70049 1.14362 1.35982 1.35029 0.85338 0.77355 0.79054 0.78540 1.20562 1.20707 1.18394 1.16304 0.81413 0.81064 0.84826 1.90995 1.77397 1.60690 1.18879 0.91725 0.92716 0.90305 0.90638 0.94327 0.85903 0.90192 0.82711 0.81596 0.82368 0.84838 0.90738 0.87482 0.85831 0.88549 0.75959 0.91515 0.96522 0.93915 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.91 71.98 0.71 -0.66 16 2 C -0.14 -1.97 6.26 30.60 0.19 -1.77 16 3 C 0.13 1.99 5.98 86.38 0.52 2.51 16 4 N -0.53 -12.12 2.78 -648.39 -1.81 -13.93 16 5 C 0.07 1.38 6.83 38.39 0.26 1.65 16 6 C -0.10 -1.12 10.02 22.34 0.22 -0.90 16 7 C -0.10 -0.84 10.03 22.29 0.22 -0.61 16 8 C -0.10 -1.11 10.03 22.29 0.22 -0.89 16 9 C -0.11 -1.88 10.02 22.34 0.22 -1.66 16 10 C 0.06 1.36 6.83 38.39 0.26 1.63 16 11 N -0.54 -15.00 2.78 -648.39 -1.81 -16.80 16 12 C 0.16 4.66 5.26 86.38 0.45 5.12 16 13 C -0.14 -4.08 6.02 29.85 0.18 -3.90 16 14 C 0.51 20.39 7.79 87.66 0.68 21.07 16 15 O -0.60 -29.09 15.65 -3.04 -0.05 -29.14 16 16 N -0.70 -29.69 5.07 -446.09 -2.26 -31.95 16 17 C 0.27 14.14 2.56 44.25 0.11 14.25 16 18 H 0.00 -0.16 7.58 -2.39 -0.02 -0.18 16 19 C -0.13 -6.68 9.26 71.98 0.67 -6.01 16 20 C -0.55 -29.53 8.73 25.60 0.22 -29.31 16 21 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 22 C 0.01 0.73 5.30 84.66 0.45 1.18 16 23 N -0.92 -53.09 11.32 21.45 0.24 -52.85 16 24 Si 0.97 42.66 29.54 68.60 2.03 44.68 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 28 C 0.66 20.60 8.45 179.14 1.51 22.11 16 29 O -0.60 -23.48 17.48 -4.30 -0.08 -23.56 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.49 8.03 -2.39 -0.02 1.47 16 37 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 38 H 0.17 0.26 8.06 -2.91 -0.02 0.23 16 39 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 41 H 0.07 2.64 8.00 -2.38 -0.02 2.62 16 42 H 0.11 2.97 8.10 -2.39 -0.02 2.95 16 43 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 44 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 45 H 0.41 14.43 8.54 -92.71 -0.79 13.64 16 46 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 47 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -78.01 411.23 3.56 -74.46 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.16 Total: 25.27 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 7.12 Total: 23.80 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -5.63 Total: -115.53 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -0.12 Total: -52.70 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -78.01 3.56 -74.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318488.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.910 kcal (2) G-P(sol) polarization free energy of solvation -78.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds