Wall clock time and date at job start Wed Apr 1 2020 03:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47606 * 2 1 4 4 N 1.46494 * 109.47480 * 180.02562 * 3 2 1 5 5 C 1.39285 * 125.82026 * 90.00127 * 4 3 2 6 6 C 1.38664 * 133.33525 * 359.95792 * 5 4 3 7 7 C 1.38110 * 119.85254 * 180.02562 * 6 5 4 8 8 C 1.38436 * 120.27846 * 0.04337 * 7 6 5 9 9 C 1.38102 * 120.28798 * 359.95817 * 8 7 6 10 10 C 1.38661 * 119.85191 * 0.02562 * 9 8 7 11 11 N 1.39284 * 133.33700 * 179.97438 * 10 9 8 12 12 C 1.46508 * 125.81547 * 0.05227 * 11 10 9 13 13 C 1.52991 * 109.46868 * 90.00266 * 12 11 10 14 14 C 1.50700 * 109.46951 * 179.97438 * 13 12 11 15 15 O 1.21290 * 120.00213 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99952 * 180.02562 * 14 13 12 17 17 C 1.37100 * 120.00185 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99791 * 322.21739 * 17 16 14 19 19 C 1.38948 * 120.00482 * 142.21088 * 17 16 14 20 20 N 1.31406 * 120.00278 * 157.14022 * 19 17 16 21 21 Si 1.86804 * 119.99877 * 337.14089 * 19 17 16 22 22 H 1.48500 * 109.47048 * 95.20122 * 21 19 17 23 23 H 1.48495 * 109.47239 * 215.20223 * 21 19 17 24 24 H 1.48504 * 109.46925 * 335.20312 * 21 19 17 25 25 C 1.46496 * 120.00159 * 359.97438 * 16 14 13 26 26 C 1.53003 * 109.47185 * 82.98031 * 25 16 14 27 27 C 1.34637 * 108.36384 * 179.78126 * 11 10 9 28 28 O 1.21681 * 125.16211 * 180.26089 * 27 11 10 29 29 H 1.09000 * 109.47462 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47178 * 299.99927 * 1 2 3 31 31 H 1.09004 * 109.47201 * 59.99906 * 1 2 3 32 32 H 1.09007 * 109.46729 * 239.99838 * 2 1 3 33 33 H 1.09000 * 109.47021 * 120.00824 * 2 1 3 34 34 H 1.09000 * 109.47604 * 300.00467 * 3 2 1 35 35 H 1.09007 * 109.47209 * 60.00132 * 3 2 1 36 36 H 1.08004 * 120.07004 * 0.02562 * 6 5 4 37 37 H 1.07993 * 119.85505 * 180.02562 * 7 6 5 38 38 H 1.08000 * 119.85442 * 179.97438 * 8 7 6 39 39 H 1.08005 * 120.07587 * 180.02562 * 9 8 7 40 40 H 1.08996 * 109.46577 * 210.00253 * 12 11 10 41 41 H 1.08996 * 109.46921 * 330.00187 * 12 11 10 42 42 H 1.08993 * 109.47575 * 299.99932 * 13 12 11 43 43 H 1.09006 * 109.47240 * 60.00144 * 13 12 11 44 44 H 0.97003 * 119.99912 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.47286 * 202.97804 * 25 16 14 46 46 H 1.09001 * 109.47686 * 322.98082 * 25 16 14 47 47 H 1.09001 * 109.46824 * 300.00056 * 26 25 16 48 48 H 1.09001 * 109.47292 * 59.99483 * 26 25 16 49 49 H 1.09002 * 109.47452 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.3197 1.4425 -1.1304 6 6 4.0582 1.4420 -2.4921 7 6 5.1050 1.4418 -3.3931 8 6 6.4139 1.4413 -2.9424 9 6 6.6842 1.4417 -1.5881 10 6 5.6399 1.4422 -0.6759 11 7 5.5865 1.4423 0.7160 12 6 6.7408 1.4429 1.6182 13 6 7.1419 2.8855 1.9322 14 6 8.3288 2.8862 2.8607 15 8 8.8072 1.8360 3.2342 16 7 8.8587 4.0537 3.2762 17 6 9.9389 4.0543 4.1205 18 1 10.0120 3.3148 4.9043 19 6 10.9396 5.0061 3.9679 20 7 11.7153 5.3126 4.9833 21 14 11.1822 5.8501 2.3192 22 1 10.4490 7.1415 2.3115 23 1 12.6292 6.1011 2.0997 24 1 10.6611 4.9786 1.2356 25 6 8.2813 5.3221 2.8247 26 6 7.0775 5.6749 3.7006 27 6 4.2934 1.4478 1.0908 28 8 3.8974 1.4539 2.2414 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.0383 1.4417 -2.8473 37 1 4.9014 1.4419 -4.4537 38 1 7.2272 1.4407 -3.6530 39 1 7.7067 1.4417 -1.2403 40 1 6.4792 0.9290 2.5431 41 1 7.5754 0.9295 1.1408 42 1 7.4034 3.3995 1.0073 43 1 6.3072 3.3990 2.4096 44 1 12.4137 5.9773 4.8768 45 1 9.0303 6.1102 2.9019 46 1 7.9602 5.2264 1.7874 47 1 6.3285 4.8868 3.6234 48 1 7.3985 5.7706 4.7379 49 1 6.6476 6.6185 3.3644 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067687713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:02 Heat of formation + Delta-G solvation = -2.014911 kcal Electronic energy + Delta-G solvation = -30820.113637 eV Core-core repulsion = 26748.490962 eV Total energy + Delta-G solvation = -4071.622675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.59844 -38.97633 -38.43003 -36.70614 -35.98077 -35.26575 -33.91977 -32.38599 -31.35391 -30.31785 -29.72771 -28.97210 -27.21675 -25.44784 -23.60127 -22.88849 -22.77271 -22.49773 -21.86090 -20.32364 -18.81984 -18.10388 -17.62765 -16.92377 -16.58161 -16.15132 -16.13132 -15.65318 -15.34291 -15.00314 -14.90446 -14.43307 -14.18456 -14.09217 -14.00356 -13.74070 -13.33664 -13.13133 -13.10371 -12.71895 -12.53734 -12.49770 -12.36184 -12.28755 -12.23475 -11.91440 -11.82406 -11.44777 -11.30650 -11.13262 -11.06302 -10.93369 -10.68085 -10.60878 -10.51001 -10.40849 -10.11528 -9.87584 -9.10671 -8.64295 -8.48509 -7.88049 -7.77920 -6.41533 -3.97591 1.02596 1.19712 2.02691 2.86344 3.01211 3.08881 3.19394 3.24039 3.52677 3.68223 4.12754 4.27061 4.38307 4.40918 4.55715 4.71189 4.81200 4.83684 4.92264 4.96085 5.04437 5.10346 5.20414 5.21242 5.24874 5.35308 5.38354 5.46576 5.48655 5.59596 5.63688 5.69534 5.75330 5.78750 5.87664 5.91133 5.93375 6.07302 6.11851 6.21294 6.26508 6.29250 6.42048 6.42713 6.48438 6.69241 6.75234 7.25268 7.52561 8.15978 8.27631 8.47755 8.94074 9.30315 9.73948 10.70449 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.002969 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.755110 B = 9428.356867 C =10402.387818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.132 3.868 4 N -0.541 5.541 5 C 0.088 3.912 6 C -0.108 4.108 7 C -0.115 4.115 8 C -0.111 4.111 9 C -0.103 4.103 10 C 0.097 3.903 11 N -0.536 5.536 12 C 0.149 3.851 13 C -0.156 4.156 14 C 0.470 3.530 15 O -0.567 6.567 16 N -0.462 5.462 17 C -0.315 4.315 18 H 0.105 0.895 19 C 0.061 3.939 20 N -0.861 5.861 21 Si 0.874 3.126 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.264 1.264 25 C 0.086 3.914 26 C -0.163 4.163 27 C 0.678 3.322 28 O -0.550 6.550 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.274 0.726 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.067 0.933 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.049 -4.929 -19.269 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.011 3.989 4 N -0.263 5.263 5 C -0.013 4.013 6 C -0.129 4.129 7 C -0.135 4.135 8 C -0.131 4.131 9 C -0.124 4.124 10 C -0.005 4.005 11 N -0.256 5.256 12 C 0.029 3.971 13 C -0.197 4.197 14 C 0.258 3.742 15 O -0.449 6.449 16 N -0.184 5.184 17 C -0.442 4.442 18 H 0.123 0.877 19 C -0.145 4.145 20 N -0.497 5.497 21 Si 0.701 3.299 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.188 1.188 25 C -0.037 4.037 26 C -0.222 4.222 27 C 0.381 3.619 28 O -0.425 6.425 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.086 0.914 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.949 -5.337 -17.989 26.667 hybrid contribution 0.277 0.773 -0.804 1.149 sum -18.672 -4.564 -18.792 26.882 Atomic orbital electron populations 1.21680 0.94452 1.02328 1.02128 1.21929 0.96592 0.96368 1.03227 1.21617 0.75014 0.98097 1.04178 1.45219 1.06720 1.69791 1.04570 1.18091 0.88188 1.05733 0.89314 1.19997 1.00032 1.04339 0.88526 1.20819 0.91942 1.01528 0.99195 1.20861 0.96989 1.00961 0.94264 1.20203 0.97625 1.02842 0.91777 1.18152 0.94113 1.04663 0.83572 1.45435 1.06941 1.68525 1.04727 1.21375 0.84771 0.97406 0.93596 1.22051 0.99265 0.97558 1.00864 1.19914 0.85943 0.84725 0.83602 1.90567 1.64072 1.30741 1.59543 1.43753 1.28560 1.02883 1.43167 1.19031 0.97532 1.17611 1.10040 0.87721 1.25358 0.95581 0.96623 0.96935 1.69771 1.20080 1.30588 1.29284 0.87005 0.77678 0.79426 0.85806 1.20213 1.21280 1.18830 1.21803 0.96246 0.88795 0.96893 1.22143 0.97728 1.00395 1.01898 1.16030 0.80713 0.80562 0.84616 1.91044 1.76538 1.58151 1.16775 0.92119 0.92233 0.92455 0.91422 0.91123 0.89456 0.88881 0.85617 0.85231 0.85074 0.84976 0.88004 0.88411 0.89787 0.89344 0.91585 0.90585 0.92373 0.92941 0.91371 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.14 -1.16 6.26 -26.74 -0.17 -1.33 16 3 C 0.13 1.20 5.98 -4.05 -0.02 1.18 16 4 N -0.54 -6.73 2.78 -118.91 -0.33 -7.06 16 5 C 0.09 1.01 6.83 -83.80 -0.57 0.44 16 6 C -0.11 -0.92 10.02 -39.47 -0.40 -1.31 16 7 C -0.11 -0.87 10.03 -39.56 -0.40 -1.26 16 8 C -0.11 -0.94 10.03 -39.56 -0.40 -1.33 16 9 C -0.10 -1.12 10.02 -39.48 -0.40 -1.52 16 10 C 0.10 1.25 6.83 -83.80 -0.57 0.68 16 11 N -0.54 -8.13 2.78 -118.91 -0.33 -8.47 16 12 C 0.15 2.48 5.26 -4.04 -0.02 2.46 16 13 C -0.16 -2.78 4.63 -27.89 -0.13 -2.91 16 14 C 0.47 10.90 7.57 -10.99 -0.08 10.82 16 15 O -0.57 -15.05 15.85 5.55 0.09 -14.96 16 16 N -0.46 -11.23 2.18 -114.81 -0.25 -11.49 16 17 C -0.32 -8.94 9.35 -14.93 -0.14 -9.08 16 18 H 0.11 3.35 7.92 -52.49 -0.42 2.93 16 19 C 0.06 1.69 5.24 -17.47 -0.09 1.59 16 20 N -0.86 -24.89 13.96 55.50 0.77 -24.11 16 21 Si 0.87 20.40 25.11 -169.99 -4.27 16.14 16 22 H -0.28 -5.99 6.67 56.52 0.38 -5.62 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 25 C 0.09 1.75 4.46 -4.04 -0.02 1.73 16 26 C -0.16 -2.88 10.11 37.16 0.38 -2.51 16 27 C 0.68 10.87 8.45 -87.16 -0.74 10.14 16 28 O -0.55 -10.55 17.48 5.21 0.09 -10.46 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.90 8.03 -51.93 -0.42 0.48 16 36 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 40 H 0.10 1.86 8.00 -51.93 -0.42 1.44 16 41 H 0.10 1.54 8.10 -51.93 -0.42 1.12 16 42 H 0.08 1.35 7.42 -51.93 -0.39 0.96 16 43 H 0.09 1.56 6.35 -51.93 -0.33 1.23 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.08 1.63 3.72 -51.93 -0.19 1.44 16 46 H 0.06 1.02 6.74 -51.93 -0.35 0.67 16 47 H 0.05 0.89 6.38 -51.93 -0.33 0.56 16 48 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 400.34 15.07 6.03 6.03 Total: -1.00 -34.41 400.34 -9.08 -43.49 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.49 Total: 3.63 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -3.40 Total: 7.26 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.14 Total: -51.13 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: 0.18 Total: -25.42 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.27 Total: 16.14 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.41 -9.08 -43.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067687713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.478 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds