Wall clock time and date at job start Wed Apr 1 2020 03:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47606 * 2 1 4 4 N 1.46494 * 109.47480 * 180.02562 * 3 2 1 5 5 C 1.39285 * 125.82026 * 90.00127 * 4 3 2 6 6 C 1.38664 * 133.33525 * 359.95792 * 5 4 3 7 7 C 1.38110 * 119.85254 * 180.02562 * 6 5 4 8 8 C 1.38436 * 120.27846 * 0.04337 * 7 6 5 9 9 C 1.38102 * 120.28798 * 359.95817 * 8 7 6 10 10 C 1.38661 * 119.85191 * 0.02562 * 9 8 7 11 11 N 1.39284 * 133.33700 * 179.97438 * 10 9 8 12 12 C 1.46508 * 125.81547 * 0.05227 * 11 10 9 13 13 C 1.52991 * 109.46868 * 90.00266 * 12 11 10 14 14 C 1.50700 * 109.46951 * 179.97438 * 13 12 11 15 15 O 1.21290 * 120.00213 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99952 * 180.02562 * 14 13 12 17 17 C 1.37100 * 120.00185 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99791 * 322.21739 * 17 16 14 19 19 C 1.38948 * 120.00482 * 142.21088 * 17 16 14 20 20 N 1.31406 * 120.00278 * 157.14022 * 19 17 16 21 21 Si 1.86804 * 119.99877 * 337.14089 * 19 17 16 22 22 H 1.48500 * 109.47048 * 95.20122 * 21 19 17 23 23 H 1.48495 * 109.47239 * 215.20223 * 21 19 17 24 24 H 1.48504 * 109.46925 * 335.20312 * 21 19 17 25 25 C 1.46496 * 120.00159 * 359.97438 * 16 14 13 26 26 C 1.53003 * 109.47185 * 82.98031 * 25 16 14 27 27 C 1.34637 * 108.36384 * 179.78126 * 11 10 9 28 28 O 1.21681 * 125.16211 * 180.26089 * 27 11 10 29 29 H 1.09000 * 109.47462 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47178 * 299.99927 * 1 2 3 31 31 H 1.09004 * 109.47201 * 59.99906 * 1 2 3 32 32 H 1.09007 * 109.46729 * 239.99838 * 2 1 3 33 33 H 1.09000 * 109.47021 * 120.00824 * 2 1 3 34 34 H 1.09000 * 109.47604 * 300.00467 * 3 2 1 35 35 H 1.09007 * 109.47209 * 60.00132 * 3 2 1 36 36 H 1.08004 * 120.07004 * 0.02562 * 6 5 4 37 37 H 1.07993 * 119.85505 * 180.02562 * 7 6 5 38 38 H 1.08000 * 119.85442 * 179.97438 * 8 7 6 39 39 H 1.08005 * 120.07587 * 180.02562 * 9 8 7 40 40 H 1.08996 * 109.46577 * 210.00253 * 12 11 10 41 41 H 1.08996 * 109.46921 * 330.00187 * 12 11 10 42 42 H 1.08993 * 109.47575 * 299.99932 * 13 12 11 43 43 H 1.09006 * 109.47240 * 60.00144 * 13 12 11 44 44 H 0.97003 * 119.99912 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.47286 * 202.97804 * 25 16 14 46 46 H 1.09001 * 109.47686 * 322.98082 * 25 16 14 47 47 H 1.09001 * 109.46824 * 300.00056 * 26 25 16 48 48 H 1.09001 * 109.47292 * 59.99483 * 26 25 16 49 49 H 1.09002 * 109.47452 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.3197 1.4425 -1.1304 6 6 4.0582 1.4420 -2.4921 7 6 5.1050 1.4418 -3.3931 8 6 6.4139 1.4413 -2.9424 9 6 6.6842 1.4417 -1.5881 10 6 5.6399 1.4422 -0.6759 11 7 5.5865 1.4423 0.7160 12 6 6.7408 1.4429 1.6182 13 6 7.1419 2.8855 1.9322 14 6 8.3288 2.8862 2.8607 15 8 8.8072 1.8360 3.2342 16 7 8.8587 4.0537 3.2762 17 6 9.9389 4.0543 4.1205 18 1 10.0120 3.3148 4.9043 19 6 10.9396 5.0061 3.9679 20 7 11.7153 5.3126 4.9833 21 14 11.1822 5.8501 2.3192 22 1 10.4490 7.1415 2.3115 23 1 12.6292 6.1011 2.0997 24 1 10.6611 4.9786 1.2356 25 6 8.2813 5.3221 2.8247 26 6 7.0775 5.6749 3.7006 27 6 4.2934 1.4478 1.0908 28 8 3.8974 1.4539 2.2414 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.0383 1.4417 -2.8473 37 1 4.9014 1.4419 -4.4537 38 1 7.2272 1.4407 -3.6530 39 1 7.7067 1.4417 -1.2403 40 1 6.4792 0.9290 2.5431 41 1 7.5754 0.9295 1.1408 42 1 7.4034 3.3995 1.0073 43 1 6.3072 3.3990 2.4096 44 1 12.4137 5.9773 4.8768 45 1 9.0303 6.1102 2.9019 46 1 7.9602 5.2264 1.7874 47 1 6.3285 4.8868 3.6234 48 1 7.3985 5.7706 4.7379 49 1 6.6476 6.6185 3.3644 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067687713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:01 Heat of formation + Delta-G solvation = -22.369400 kcal Electronic energy + Delta-G solvation = -30820.996274 eV Core-core repulsion = 26748.490962 eV Total energy + Delta-G solvation = -4072.505311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.56929 -40.80308 -39.36353 -37.71230 -37.15649 -36.95511 -34.85804 -34.35713 -32.55727 -31.41905 -31.09570 -29.87977 -28.25871 -26.99177 -25.07402 -24.44137 -23.53081 -23.38138 -22.69608 -21.31384 -20.62569 -18.97293 -18.96258 -18.60060 -17.80055 -17.72712 -17.29580 -17.13908 -16.48326 -16.15214 -15.94081 -15.69477 -15.32860 -15.23979 -14.88893 -14.83943 -14.73549 -14.61167 -14.28327 -14.13928 -14.04162 -13.74744 -13.62270 -13.23333 -13.09016 -13.02949 -12.91619 -12.75230 -12.59945 -12.46246 -12.36264 -11.98276 -11.97293 -11.79858 -11.66397 -11.59534 -11.52367 -11.34694 -11.10545 -10.49347 -9.78635 -9.32778 -8.81317 -8.54503 -6.17122 0.28766 0.45379 1.00677 1.17968 1.29687 1.43418 1.72465 1.84137 2.13492 2.16192 2.63725 2.82323 2.92697 3.50150 3.55484 3.71447 3.79272 3.85124 3.92829 3.96559 4.04770 4.18395 4.20739 4.30211 4.33395 4.35664 4.39895 4.41378 4.48028 4.57458 4.57710 4.72257 4.75304 4.82331 4.85407 4.91784 4.93940 5.08545 5.10600 5.19754 5.28669 5.30123 5.37606 5.50388 5.56455 5.62433 5.72455 5.84813 6.00945 6.31964 6.49205 6.88559 7.04237 7.24046 7.78394 8.62652 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.002969 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.755110 B = 9428.356867 C =10402.387818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.125 3.875 4 N -0.534 5.534 5 C 0.074 3.926 6 C -0.099 4.099 7 C -0.101 4.101 8 C -0.104 4.104 9 C -0.116 4.116 10 C 0.062 3.938 11 N -0.538 5.538 12 C 0.159 3.841 13 C -0.134 4.134 14 C 0.465 3.535 15 O -0.612 6.612 16 N -0.473 5.473 17 C -0.336 4.336 18 H 0.042 0.958 19 C 0.013 3.987 20 N -0.907 5.907 21 Si 0.948 3.052 22 H -0.239 1.239 23 H -0.286 1.286 24 H -0.254 1.254 25 C 0.078 3.922 26 C -0.157 4.157 27 C 0.662 3.338 28 O -0.600 6.600 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.037 0.963 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.158 0.842 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.129 0.871 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.281 0.719 45 H 0.068 0.932 46 H 0.097 0.903 47 H 0.054 0.946 48 H 0.040 0.960 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.135 -3.173 -25.188 33.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.005 3.995 4 N -0.255 5.255 5 C -0.026 4.026 6 C -0.120 4.120 7 C -0.120 4.120 8 C -0.124 4.124 9 C -0.137 4.137 10 C -0.038 4.038 11 N -0.259 5.259 12 C 0.037 3.963 13 C -0.175 4.175 14 C 0.254 3.746 15 O -0.497 6.497 16 N -0.194 5.194 17 C -0.464 4.464 18 H 0.060 0.940 19 C -0.189 4.189 20 N -0.544 5.544 21 Si 0.770 3.230 22 H -0.164 1.164 23 H -0.212 1.212 24 H -0.178 1.178 25 C -0.044 4.044 26 C -0.215 4.215 27 C 0.365 3.635 28 O -0.479 6.479 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.142 0.858 35 H 0.099 0.901 36 H 0.175 0.825 37 H 0.186 0.814 38 H 0.176 0.824 39 H 0.147 0.853 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.112 0.888 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.115 0.885 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.075 -3.562 -23.973 32.118 hybrid contribution 0.922 0.127 0.985 1.355 sum -20.153 -3.435 -22.988 30.764 Atomic orbital electron populations 1.21657 0.92551 1.02886 1.02977 1.21863 0.98119 0.95495 1.01966 1.21927 0.73298 0.98911 1.05316 1.45276 1.07615 1.68624 1.03938 1.18433 0.87230 1.06845 0.90136 1.20442 1.02105 1.02513 0.86921 1.21319 0.91021 0.98778 1.00916 1.21260 0.98589 0.99107 0.93419 1.20403 0.97100 1.03474 0.92719 1.18499 0.95766 1.07287 0.82277 1.45233 1.06073 1.68731 1.05843 1.21044 0.85695 0.96435 0.93155 1.21877 0.96515 0.98749 1.00386 1.20799 0.86684 0.83762 0.83345 1.90536 1.65680 1.32445 1.61086 1.43883 1.27867 1.04923 1.42718 1.18602 1.00438 1.17123 1.10234 0.94047 1.26185 0.94499 0.97220 1.01017 1.69885 1.20958 1.31832 1.31775 0.85848 0.77921 0.79664 0.79602 1.16417 1.21225 1.17770 1.22080 0.96619 0.86339 0.99344 1.22092 0.96853 1.02601 0.99972 1.16283 0.81311 0.81050 0.84868 1.90986 1.77420 1.60694 1.18831 0.91741 0.92701 0.90261 0.90641 0.94389 0.85808 0.90146 0.82490 0.81434 0.82429 0.85310 0.90882 0.87938 0.86860 0.88838 0.90926 0.91356 0.88516 0.92712 0.94051 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.91 71.98 0.71 -0.72 16 2 C -0.14 -2.07 6.26 30.59 0.19 -1.88 16 3 C 0.13 2.09 5.98 86.38 0.52 2.61 16 4 N -0.53 -12.80 2.78 -648.43 -1.81 -14.61 16 5 C 0.07 1.52 6.83 38.39 0.26 1.78 16 6 C -0.10 -1.20 10.02 22.34 0.22 -0.98 16 7 C -0.10 -0.95 10.03 22.29 0.22 -0.72 16 8 C -0.10 -1.30 10.03 22.28 0.22 -1.07 16 9 C -0.12 -2.24 10.02 22.34 0.22 -2.02 16 10 C 0.06 1.51 6.83 38.39 0.26 1.77 16 11 N -0.54 -16.59 2.78 -648.42 -1.81 -18.39 16 12 C 0.16 5.50 5.26 86.37 0.45 5.95 16 13 C -0.13 -4.77 4.63 29.85 0.14 -4.64 16 14 C 0.46 22.25 7.57 87.66 0.66 22.91 16 15 O -0.61 -34.64 15.85 -3.06 -0.05 -34.69 16 16 N -0.47 -23.45 2.18 -635.54 -1.39 -24.84 16 17 C -0.34 -20.17 9.35 84.04 0.79 -19.38 16 18 H 0.04 2.93 7.92 -2.91 -0.02 2.91 16 19 C 0.01 0.76 5.24 84.93 0.45 1.20 16 20 N -0.91 -54.48 13.96 21.66 0.30 -54.18 16 21 Si 0.95 41.47 25.11 68.60 1.72 43.19 16 22 H -0.24 -9.13 6.67 99.48 0.66 -8.47 16 23 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 24 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 25 C 0.08 3.02 4.46 86.38 0.39 3.41 16 26 C -0.16 -5.33 10.11 71.98 0.73 -4.60 16 27 C 0.66 21.88 8.45 179.14 1.51 23.39 16 28 O -0.60 -24.50 17.48 -4.29 -0.07 -24.57 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.55 8.03 -2.38 -0.02 1.53 16 36 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 37 H 0.17 0.40 8.06 -2.91 -0.02 0.37 16 38 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 39 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 40 H 0.07 2.92 8.00 -2.39 -0.02 2.90 16 41 H 0.10 3.37 8.10 -2.39 -0.02 3.35 16 42 H 0.11 3.37 7.42 -2.39 -0.02 3.35 16 43 H 0.09 3.27 6.35 -2.38 -0.02 3.26 16 44 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 45 H 0.07 2.74 3.72 -2.39 -0.01 2.73 16 46 H 0.10 2.99 6.74 -2.39 -0.02 2.97 16 47 H 0.05 1.82 6.38 -2.39 -0.02 1.80 16 48 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -84.13 400.34 5.76 -78.37 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.90 Total: 22.71 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: 7.95 Total: 27.01 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -4.70 Total: -112.02 kcal Atomic # 8 Polarization: -59.14 SS G_CDS: -0.12 Total: -59.26 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.72 Total: 43.19 kcal Total: -84.13 5.76 -78.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067687713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.001 kcal (2) G-P(sol) polarization free energy of solvation -84.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds