Wall clock time and date at job start Wed Apr 1 2020 03:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46964 * 2 1 4 4 N 1.46501 * 109.46686 * 180.02562 * 3 2 1 5 5 C 1.34778 * 119.99853 * 180.02562 * 4 3 2 6 6 O 1.21549 * 119.99935 * 359.97438 * 5 4 3 7 7 C 1.47861 * 120.00197 * 179.97438 * 5 4 3 8 8 C 1.39705 * 120.06802 * 359.72510 * 7 5 4 9 9 C 1.38066 * 120.13761 * 179.74099 * 8 7 5 10 10 C 1.38092 * 120.29881 * 0.55351 * 9 8 7 11 11 C 1.39673 * 120.14572 * 359.70249 * 10 9 8 12 12 C 1.47859 * 120.07385 * 179.97438 * 11 10 9 13 13 O 1.21553 * 119.99644 * 222.77669 * 12 11 10 14 14 N 1.34771 * 119.99864 * 42.77359 * 12 11 10 15 15 C 1.46961 * 120.59855 * 5.63429 * 14 12 11 16 16 C 1.53811 * 108.39711 * 124.75612 * 15 14 12 17 17 N 1.46967 * 108.57826 * 49.64373 * 16 15 14 18 18 C 1.36934 * 120.59481 * 124.62492 * 17 16 15 19 19 H 1.07999 * 120.00107 * 213.41091 * 18 17 16 20 20 C 1.38815 * 120.00050 * 33.40436 * 18 17 16 21 21 N 1.31614 * 119.99900 * 18.31758 * 20 18 17 22 22 Si 1.86801 * 119.99883 * 198.31175 * 20 18 17 23 23 H 1.48499 * 109.47014 * 90.00612 * 22 20 18 24 24 H 1.48498 * 109.47033 * 210.00256 * 22 20 18 25 25 H 1.48495 * 109.47466 * 330.00572 * 22 20 18 26 26 C 1.46966 * 118.80773 * 304.64411 * 17 16 15 27 27 C 1.46967 * 120.59295 * 185.91736 * 14 12 11 28 28 C 1.39292 * 120.07507 * 179.97438 * 7 5 4 29 29 H 1.09004 * 109.47086 * 300.00326 * 1 2 3 30 30 H 1.09005 * 109.46683 * 59.99758 * 1 2 3 31 31 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46941 * 240.00088 * 2 1 3 33 33 H 1.08991 * 109.46743 * 119.99970 * 2 1 3 34 34 H 1.09000 * 109.47006 * 59.99998 * 3 2 1 35 35 H 1.09000 * 109.47090 * 300.00154 * 3 2 1 36 36 H 0.96996 * 119.99971 * 359.97438 * 4 3 2 37 37 H 1.07993 * 119.93290 * 0.02562 * 8 7 5 38 38 H 1.08002 * 119.84547 * 180.25175 * 9 8 7 39 39 H 1.08003 * 119.92945 * 179.71732 * 10 9 8 40 40 H 1.08997 * 109.61095 * 244.54458 * 15 14 12 41 41 H 1.09004 * 109.60478 * 5.05544 * 15 14 12 42 42 H 1.08996 * 109.74344 * 289.85225 * 16 15 14 43 43 H 1.09000 * 109.53206 * 169.30664 * 16 15 14 44 44 H 0.97004 * 119.99877 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.60805 * 295.47965 * 26 17 16 46 46 H 1.09000 * 109.74527 * 175.05936 * 26 17 16 47 47 H 1.09007 * 109.60544 * 354.94676 * 27 14 12 48 48 H 1.08996 * 109.61176 * 115.28388 * 27 14 12 49 49 H 1.07998 * 120.14505 * 0.02562 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1790 2.6096 -0.0002 6 8 3.5712 3.6623 0.0002 7 6 5.6576 2.6097 -0.0003 8 6 6.3575 1.4006 0.0051 9 6 7.7382 1.3989 -0.0004 10 6 8.4363 2.5904 0.0004 11 6 7.7489 3.8062 0.0005 12 6 8.4980 5.0810 0.0019 13 8 8.1391 5.9960 0.7170 14 7 9.5788 5.2283 -0.7896 15 6 9.9524 4.1791 -1.7484 16 6 10.0425 4.8103 -3.1482 17 7 10.8721 6.0204 -3.0636 18 6 11.9708 6.1697 -3.8672 19 1 12.8386 6.6993 -3.5026 20 6 11.9692 5.6404 -5.1505 21 7 10.8310 5.3220 -5.7296 22 14 13.5825 5.3801 -6.0554 23 1 14.1003 4.0194 -5.7626 24 1 13.3587 5.5206 -7.5167 25 1 14.5711 6.3931 -5.6064 26 6 10.5017 7.0672 -2.1008 27 6 10.4085 6.4384 -0.7051 28 6 6.3556 3.8151 -0.0004 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9900 0.6024 -0.0006 37 1 5.8176 0.4654 0.0088 38 1 8.2745 0.4615 -0.0003 39 1 9.5163 2.5821 0.0008 40 1 10.9187 3.7576 -1.4714 41 1 9.1947 3.3955 -1.7469 42 1 9.0445 5.0746 -3.4977 43 1 10.4989 4.1014 -3.8390 44 1 10.8299 4.9524 -6.6265 45 1 9.5365 7.4922 -2.3759 46 1 11.2594 7.8508 -2.0992 47 1 9.9520 7.1473 -0.0142 48 1 11.4055 6.1745 -0.3526 49 1 5.8192 4.7524 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073100640.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:52 Heat of formation + Delta-G solvation = -17.443594 kcal Electronic energy + Delta-G solvation = -29863.438562 eV Core-core repulsion = 25791.146850 eV Total energy + Delta-G solvation = -4072.291713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.65327 -39.74252 -38.06479 -36.76433 -36.12478 -33.96677 -33.21886 -31.94851 -31.26254 -30.87171 -30.10072 -27.11932 -26.74054 -24.49415 -23.76613 -23.23035 -22.53191 -22.01733 -21.21399 -20.29850 -19.13249 -17.98959 -16.88498 -16.60231 -16.38508 -16.14373 -15.85745 -15.71926 -15.13492 -14.80714 -14.72547 -14.45638 -14.31384 -13.96673 -13.74372 -13.53902 -13.35582 -13.31759 -13.19661 -13.02873 -12.62342 -12.50054 -12.34398 -12.08132 -11.64746 -11.58518 -11.53528 -11.38805 -11.34665 -10.86147 -10.81404 -10.51872 -10.30101 -10.18510 -10.12750 -9.87736 -9.59402 -9.43298 -9.16928 -9.01686 -8.61151 -8.30391 -6.68894 -5.89462 -3.37884 0.54322 0.99258 2.52183 2.79479 3.05216 3.31213 3.33783 3.39328 3.40639 3.74140 4.32197 4.40776 4.43452 4.50384 4.51116 4.64588 4.74469 4.83560 4.97996 5.17194 5.17741 5.20716 5.23903 5.29541 5.32440 5.44890 5.56320 5.65829 5.70967 5.74085 5.74744 5.80786 5.87822 6.01293 6.03251 6.05715 6.09937 6.16477 6.17501 6.31109 6.39361 6.56967 6.78262 6.88706 7.13454 7.17747 7.33291 7.71849 7.80880 7.95970 8.35603 8.43379 9.08513 9.70229 10.31235 11.18020 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.002283 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.164434 B =12259.694833 C =13058.434144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.730 5.730 5 C 0.561 3.439 6 O -0.531 6.531 7 C -0.145 4.145 8 C -0.071 4.071 9 C -0.132 4.132 10 C -0.059 4.059 11 C -0.123 4.123 12 C 0.552 3.448 13 O -0.547 6.547 14 N -0.588 5.588 15 C 0.072 3.928 16 C 0.162 3.838 17 N -0.589 5.589 18 C -0.263 4.263 19 H 0.066 0.934 20 C 0.010 3.990 21 N -0.896 5.896 22 Si 0.903 3.097 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.278 1.278 26 C 0.131 3.869 27 C 0.096 3.904 28 C -0.008 4.008 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.400 0.600 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.026 0.974 43 H 0.089 0.911 44 H 0.256 0.744 45 H 0.025 0.975 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.065 0.935 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.817 -15.431 12.240 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.383 5.383 5 C 0.349 3.651 6 O -0.408 6.408 7 C -0.148 4.148 8 C -0.090 4.090 9 C -0.150 4.150 10 C -0.078 4.078 11 C -0.126 4.126 12 C 0.340 3.660 13 O -0.426 6.426 14 N -0.319 5.319 15 C -0.052 4.052 16 C 0.035 3.965 17 N -0.312 5.312 18 C -0.392 4.392 19 H 0.083 0.917 20 C -0.191 4.191 21 N -0.539 5.539 22 Si 0.732 3.268 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.203 1.203 26 C 0.004 3.996 27 C -0.028 4.028 28 C -0.028 4.028 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.235 0.765 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.044 0.956 43 H 0.107 0.893 44 H 0.066 0.934 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.102 0.898 48 H 0.083 0.917 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.469 -14.211 12.405 23.179 hybrid contribution 1.068 -0.732 -0.718 1.480 sum -12.401 -14.943 11.687 22.664 Atomic orbital electron populations 1.21680 0.94428 1.02212 1.02466 1.21745 0.97136 0.95750 1.02797 1.21438 0.79128 0.97264 1.02772 1.45893 1.07477 1.08543 1.76404 1.18241 0.87115 0.83698 0.76059 1.90804 1.69823 1.31116 1.49016 1.19760 0.92662 0.94237 1.08158 1.21370 0.94708 0.96625 0.96267 1.21032 0.93783 0.98323 1.01864 1.21668 1.00856 0.91326 0.93911 1.19961 0.93919 0.94006 1.04724 1.18247 0.80507 0.86833 0.80439 1.90753 1.67670 1.41476 1.42749 1.47967 1.26406 1.20636 1.36940 1.23051 0.99687 0.89956 0.92502 1.21149 0.94949 0.89711 0.90662 1.43928 1.30441 1.14478 1.42317 1.19138 0.91670 1.35471 0.92921 0.91669 1.25200 0.96598 1.01442 0.95811 1.70055 1.24015 1.45881 1.13926 0.86297 0.83408 0.78285 0.78800 1.21287 1.21717 1.20273 1.21308 0.98601 0.91760 0.87909 1.22268 0.93672 0.86506 1.00358 1.21273 0.92239 0.98325 0.90942 0.92295 0.92236 0.92129 0.91175 0.91265 0.91286 0.91213 0.76502 0.85502 0.84607 0.84451 0.91534 0.90381 0.95554 0.89289 0.93449 0.95746 0.91371 0.89832 0.91686 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.30 16 2 C -0.14 -0.65 6.05 -26.73 -0.16 -0.81 16 3 C 0.12 0.90 5.67 -4.04 -0.02 0.88 16 4 N -0.73 -6.22 5.51 -61.24 -0.34 -6.56 16 5 C 0.56 7.11 7.77 -12.32 -0.10 7.02 16 6 O -0.53 -8.88 16.34 5.32 0.09 -8.80 16 7 C -0.15 -1.77 5.87 -105.02 -0.62 -2.39 16 8 C -0.07 -0.63 9.54 -39.10 -0.37 -1.00 16 9 C -0.13 -1.19 10.02 -39.70 -0.40 -1.58 16 10 C -0.06 -0.69 7.38 -39.10 -0.29 -0.98 16 11 C -0.12 -1.85 5.05 -105.02 -0.53 -2.38 16 12 C 0.55 10.06 7.29 -12.33 -0.09 9.97 16 13 O -0.55 -11.54 16.37 5.32 0.09 -11.45 16 14 N -0.59 -10.67 2.94 -173.33 -0.51 -11.18 16 15 C 0.07 1.25 5.21 -3.37 -0.02 1.23 16 16 C 0.16 3.64 5.51 -3.37 -0.02 3.62 16 17 N -0.59 -14.25 2.93 -171.77 -0.50 -14.75 16 18 C -0.26 -6.92 9.51 -15.06 -0.14 -7.06 16 19 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 20 C 0.01 0.26 4.84 -17.43 -0.08 0.17 16 21 N -0.90 -25.22 11.66 55.49 0.65 -24.57 16 22 Si 0.90 20.84 29.59 -169.99 -5.03 15.81 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 C 0.13 2.77 6.67 -3.60 -0.02 2.74 16 27 C 0.10 1.75 6.60 -3.60 -0.02 1.73 16 28 C -0.01 -0.12 9.21 -38.78 -0.36 -0.48 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.40 2.18 6.50 -40.82 -0.27 1.91 16 37 H 0.13 0.64 6.39 -52.49 -0.34 0.31 16 38 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.14 1.47 6.81 -52.48 -0.36 1.11 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.18 4.76 -51.93 -0.25 0.93 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.09 2.17 6.44 -51.93 -0.33 1.83 16 44 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 1.37 7.94 -51.93 -0.41 0.96 16 47 H 0.08 1.51 6.99 -51.92 -0.36 1.15 16 48 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 49 H 0.14 2.40 7.64 -52.49 -0.40 2.00 16 LS Contribution 396.04 15.07 5.97 5.97 Total: -1.00 -34.02 396.04 -9.81 -43.83 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.34 Total: 1.31 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: -2.88 Total: 10.38 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.70 Total: -57.06 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.17 Total: -20.25 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.02 -9.81 -43.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073100640.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.386 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds