Wall clock time and date at job start Wed Apr 1 2020 03:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46964 * 2 1 4 4 N 1.46501 * 109.46686 * 180.02562 * 3 2 1 5 5 C 1.34778 * 119.99853 * 180.02562 * 4 3 2 6 6 O 1.21549 * 119.99935 * 359.97438 * 5 4 3 7 7 C 1.47861 * 120.00197 * 179.97438 * 5 4 3 8 8 C 1.39705 * 120.06802 * 359.72510 * 7 5 4 9 9 C 1.38066 * 120.13761 * 179.74099 * 8 7 5 10 10 C 1.38092 * 120.29881 * 0.55351 * 9 8 7 11 11 C 1.39673 * 120.14572 * 359.70249 * 10 9 8 12 12 C 1.47859 * 120.07385 * 179.97438 * 11 10 9 13 13 O 1.21553 * 119.99644 * 222.77669 * 12 11 10 14 14 N 1.34771 * 119.99864 * 42.77359 * 12 11 10 15 15 C 1.46961 * 120.59855 * 5.63429 * 14 12 11 16 16 C 1.53811 * 108.39711 * 124.75612 * 15 14 12 17 17 N 1.46967 * 108.57826 * 49.64373 * 16 15 14 18 18 C 1.36934 * 120.59481 * 124.62492 * 17 16 15 19 19 H 1.07999 * 120.00107 * 213.41091 * 18 17 16 20 20 C 1.38815 * 120.00050 * 33.40436 * 18 17 16 21 21 N 1.31614 * 119.99900 * 18.31758 * 20 18 17 22 22 Si 1.86801 * 119.99883 * 198.31175 * 20 18 17 23 23 H 1.48499 * 109.47014 * 90.00612 * 22 20 18 24 24 H 1.48498 * 109.47033 * 210.00256 * 22 20 18 25 25 H 1.48495 * 109.47466 * 330.00572 * 22 20 18 26 26 C 1.46966 * 118.80773 * 304.64411 * 17 16 15 27 27 C 1.46967 * 120.59295 * 185.91736 * 14 12 11 28 28 C 1.39292 * 120.07507 * 179.97438 * 7 5 4 29 29 H 1.09004 * 109.47086 * 300.00326 * 1 2 3 30 30 H 1.09005 * 109.46683 * 59.99758 * 1 2 3 31 31 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46941 * 240.00088 * 2 1 3 33 33 H 1.08991 * 109.46743 * 119.99970 * 2 1 3 34 34 H 1.09000 * 109.47006 * 59.99998 * 3 2 1 35 35 H 1.09000 * 109.47090 * 300.00154 * 3 2 1 36 36 H 0.96996 * 119.99971 * 359.97438 * 4 3 2 37 37 H 1.07993 * 119.93290 * 0.02562 * 8 7 5 38 38 H 1.08002 * 119.84547 * 180.25175 * 9 8 7 39 39 H 1.08003 * 119.92945 * 179.71732 * 10 9 8 40 40 H 1.08997 * 109.61095 * 244.54458 * 15 14 12 41 41 H 1.09004 * 109.60478 * 5.05544 * 15 14 12 42 42 H 1.08996 * 109.74344 * 289.85225 * 16 15 14 43 43 H 1.09000 * 109.53206 * 169.30664 * 16 15 14 44 44 H 0.97004 * 119.99877 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.60805 * 295.47965 * 26 17 16 46 46 H 1.09000 * 109.74527 * 175.05936 * 26 17 16 47 47 H 1.09007 * 109.60544 * 354.94676 * 27 14 12 48 48 H 1.08996 * 109.61176 * 115.28388 * 27 14 12 49 49 H 1.07998 * 120.14505 * 0.02562 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1790 2.6096 -0.0002 6 8 3.5712 3.6623 0.0002 7 6 5.6576 2.6097 -0.0003 8 6 6.3575 1.4006 0.0051 9 6 7.7382 1.3989 -0.0004 10 6 8.4363 2.5904 0.0004 11 6 7.7489 3.8062 0.0005 12 6 8.4980 5.0810 0.0019 13 8 8.1391 5.9960 0.7170 14 7 9.5788 5.2283 -0.7896 15 6 9.9524 4.1791 -1.7484 16 6 10.0425 4.8103 -3.1482 17 7 10.8721 6.0204 -3.0636 18 6 11.9708 6.1697 -3.8672 19 1 12.8386 6.6993 -3.5026 20 6 11.9692 5.6404 -5.1505 21 7 10.8310 5.3220 -5.7296 22 14 13.5825 5.3801 -6.0554 23 1 14.1003 4.0194 -5.7626 24 1 13.3587 5.5206 -7.5167 25 1 14.5711 6.3931 -5.6064 26 6 10.5017 7.0672 -2.1008 27 6 10.4085 6.4384 -0.7051 28 6 6.3556 3.8151 -0.0004 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9900 0.6024 -0.0006 37 1 5.8176 0.4654 0.0088 38 1 8.2745 0.4615 -0.0003 39 1 9.5163 2.5821 0.0008 40 1 10.9187 3.7576 -1.4714 41 1 9.1947 3.3955 -1.7469 42 1 9.0445 5.0746 -3.4977 43 1 10.4989 4.1014 -3.8390 44 1 10.8299 4.9524 -6.6265 45 1 9.5365 7.4922 -2.3759 46 1 11.2594 7.8508 -2.0992 47 1 9.9520 7.1473 -0.0142 48 1 11.4055 6.1745 -0.3526 49 1 5.8192 4.7524 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073100640.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:51 Heat of formation + Delta-G solvation = -39.932850 kcal Electronic energy + Delta-G solvation = -29864.413770 eV Core-core repulsion = 25791.146850 eV Total energy + Delta-G solvation = -4073.266920 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.77114 -40.93606 -39.15333 -38.39276 -36.87047 -35.69090 -34.04989 -33.36465 -32.35142 -32.17781 -31.57951 -28.79103 -27.46401 -25.99575 -24.85182 -24.70137 -23.86516 -22.61129 -22.39669 -21.55616 -20.47855 -19.31588 -18.31226 -17.75220 -17.49726 -17.07626 -16.94875 -16.81007 -16.65081 -16.42728 -15.61028 -15.53089 -15.51423 -15.42504 -15.11272 -15.06113 -14.79287 -14.64986 -14.10839 -13.85866 -13.71283 -13.42562 -13.32934 -13.16998 -12.94660 -12.90536 -12.66244 -12.59308 -12.50208 -12.23135 -12.06960 -12.03561 -11.96496 -11.74678 -11.68163 -11.22645 -10.98717 -10.61164 -10.32764 -10.13194 -9.94944 -9.86256 -8.63908 -7.90591 -5.43815 -0.37476 0.00411 1.45304 1.49869 1.50851 1.60073 1.73825 1.97593 2.09232 2.50751 2.75519 3.23472 3.34161 3.56214 3.57966 3.80844 3.89108 3.98112 4.06084 4.08084 4.19238 4.22249 4.28221 4.33781 4.37875 4.48288 4.55200 4.63416 4.65935 4.72894 4.75231 4.77663 4.84212 4.87631 5.01604 5.12843 5.15476 5.16117 5.20150 5.23181 5.25374 5.28034 5.44698 5.46184 5.53114 5.65025 5.72220 6.35024 6.36418 6.43773 6.99857 7.09187 7.10234 7.74572 8.33013 9.14565 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.002283 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.164434 B =12259.694833 C =13058.434144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.113 3.887 4 N -0.707 5.707 5 C 0.555 3.445 6 O -0.586 6.586 7 C -0.153 4.153 8 C -0.047 4.047 9 C -0.114 4.114 10 C -0.059 4.059 11 C -0.148 4.148 12 C 0.550 3.450 13 O -0.586 6.586 14 N -0.593 5.593 15 C 0.091 3.909 16 C 0.167 3.833 17 N -0.605 5.605 18 C -0.271 4.271 19 H 0.068 0.932 20 C -0.041 4.041 21 N -0.932 5.932 22 Si 0.970 3.030 23 H -0.277 1.277 24 H -0.299 1.299 25 H -0.270 1.270 26 C 0.131 3.869 27 C 0.105 3.895 28 C -0.034 4.034 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.418 0.582 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.153 0.847 40 H 0.088 0.912 41 H 0.105 0.895 42 H -0.009 1.009 43 H 0.069 0.931 44 H 0.253 0.747 45 H 0.000 1.000 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.650 -19.857 13.163 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.010 4.010 4 N -0.360 5.360 5 C 0.344 3.656 6 O -0.467 6.467 7 C -0.156 4.156 8 C -0.065 4.065 9 C -0.131 4.131 10 C -0.077 4.077 11 C -0.151 4.151 12 C 0.340 3.660 13 O -0.468 6.468 14 N -0.323 5.323 15 C -0.032 4.032 16 C 0.041 3.959 17 N -0.328 5.328 18 C -0.401 4.401 19 H 0.086 0.914 20 C -0.237 4.237 21 N -0.576 5.576 22 Si 0.798 3.202 23 H -0.203 1.203 24 H -0.226 1.226 25 H -0.195 1.195 26 C 0.004 3.996 27 C -0.018 4.018 28 C -0.054 4.054 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.257 0.743 37 H 0.194 0.806 38 H 0.202 0.798 39 H 0.170 0.830 40 H 0.106 0.894 41 H 0.123 0.877 42 H 0.009 0.991 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.018 0.982 46 H 0.094 0.906 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.294 -18.697 13.352 26.058 hybrid contribution 0.599 0.646 -0.996 1.330 sum -11.695 -18.052 12.355 24.805 Atomic orbital electron populations 1.21706 0.94327 1.02893 1.02087 1.21696 0.97103 0.93397 1.04111 1.21547 0.78484 0.99388 1.01564 1.45749 1.07903 1.08078 1.74255 1.18474 0.87520 0.84008 0.75636 1.90780 1.70810 1.33280 1.51811 1.19795 0.92433 0.94644 1.08770 1.21901 0.95081 0.96799 0.92746 1.21573 0.93751 0.98922 0.98855 1.21914 1.01705 0.90837 0.93264 1.19731 0.93567 0.93736 1.08029 1.18821 0.79982 0.87728 0.79478 1.90716 1.68448 1.43303 1.44369 1.48034 1.26549 1.20656 1.37074 1.22876 1.01752 0.89711 0.88901 1.21001 0.92460 0.89060 0.93415 1.44202 1.30281 1.15774 1.42585 1.19460 0.92293 1.35011 0.93328 0.91395 1.25964 0.99555 1.01599 0.96606 1.70207 1.26073 1.47190 1.14112 0.85240 0.79641 0.78529 0.76801 1.20331 1.22557 1.19457 1.21360 0.97480 0.91729 0.88986 1.22091 0.94772 0.86822 0.98149 1.21073 0.92556 0.98330 0.93461 0.92617 0.92826 0.90849 0.89957 0.89708 0.92429 0.92737 0.74257 0.80573 0.79794 0.82960 0.89410 0.87666 0.99077 0.91228 0.93842 0.98204 0.90586 0.89843 0.89794 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 71.98 0.71 -0.38 16 2 C -0.13 -0.86 6.05 30.60 0.19 -0.68 16 3 C 0.11 1.63 5.67 86.38 0.49 2.12 16 4 N -0.71 -10.61 5.51 -465.95 -2.57 -13.18 16 5 C 0.56 14.01 7.77 86.79 0.67 14.69 16 6 O -0.59 -20.91 16.34 -3.87 -0.06 -20.98 16 7 C -0.15 -3.58 5.87 -20.12 -0.12 -3.69 16 8 C -0.05 -0.61 9.54 22.58 0.22 -0.39 16 9 C -0.11 -1.41 10.02 22.19 0.22 -1.19 16 10 C -0.06 -1.18 7.38 22.58 0.17 -1.01 16 11 C -0.15 -4.41 5.05 -20.12 -0.10 -4.51 16 12 C 0.55 20.55 7.29 86.79 0.63 21.19 16 13 O -0.59 -26.03 16.37 -3.88 -0.06 -26.09 16 14 N -0.59 -21.51 2.94 -820.56 -2.41 -23.92 16 15 C 0.09 3.06 5.21 86.57 0.45 3.51 16 16 C 0.17 7.65 5.51 86.56 0.48 8.13 16 17 N -0.60 -29.78 2.93 -697.36 -2.05 -31.83 16 18 C -0.27 -14.34 9.51 84.03 0.80 -13.54 16 19 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 20 C -0.04 -2.17 4.84 84.86 0.41 -1.76 16 21 N -0.93 -53.58 11.66 21.65 0.25 -53.33 16 22 Si 0.97 42.81 29.59 68.60 2.03 44.84 16 23 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.30 -13.47 7.11 99.48 0.71 -12.77 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 C 0.13 5.68 6.67 86.41 0.58 6.25 16 27 C 0.11 3.89 6.60 86.41 0.57 4.46 16 28 C -0.03 -1.07 9.21 22.79 0.21 -0.86 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.42 2.77 6.50 -92.71 -0.60 2.17 16 37 H 0.18 0.53 6.39 -2.91 -0.02 0.51 16 38 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 39 H 0.15 2.61 6.81 -2.91 -0.02 2.59 16 40 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.11 2.98 4.76 -2.38 -0.01 2.97 16 42 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 43 H 0.07 3.45 6.44 -2.39 -0.02 3.43 16 44 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 45 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.08 3.11 7.94 -2.39 -0.02 3.09 16 47 H 0.08 3.09 6.99 -2.38 -0.02 3.07 16 48 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 49 H 0.11 4.00 7.64 -2.91 -0.02 3.98 16 Total: -1.00 -80.84 396.04 2.07 -78.77 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.36 Total: 13.39 kcal Atomic # 6 Polarization: 25.75 SS G_CDS: 6.57 Total: 32.32 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -6.77 Total: -122.26 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -0.13 Total: -47.07 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -80.84 2.07 -78.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073100640.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.833 kcal (2) G-P(sol) polarization free energy of solvation -80.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds