Wall clock time and date at job start Wed Apr 1 2020 03:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46873 * 2 1 4 4 N 1.46498 * 109.46939 * 180.02562 * 3 2 1 5 5 C 1.37096 * 119.99731 * 267.31286 * 4 3 2 6 6 H 1.07999 * 119.99700 * 139.90620 * 5 4 3 7 7 C 1.38947 * 120.00384 * 319.91099 * 5 4 3 8 8 N 1.31404 * 120.00224 * 161.35975 * 7 5 4 9 9 Si 1.86803 * 119.99717 * 341.36405 * 7 5 4 10 10 H 1.48498 * 109.47042 * 88.47611 * 9 7 5 11 11 H 1.48495 * 109.46993 * 208.47352 * 9 7 5 12 12 H 1.48495 * 109.47203 * 328.47651 * 9 7 5 13 13 C 1.34781 * 120.00222 * 87.31798 * 4 3 2 14 14 O 1.21291 * 119.99509 * 179.97438 * 13 4 3 15 15 C 1.50695 * 119.99798 * 359.97438 * 13 4 3 16 16 N 1.46499 * 109.46802 * 180.02562 * 15 13 4 17 17 C 1.34784 * 120.00005 * 180.02562 * 16 15 13 18 18 O 1.21583 * 119.99838 * 4.83918 * 17 16 15 19 19 N 1.34778 * 119.99933 * 184.84266 * 17 16 15 20 20 C 1.47240 * 121.33910 * 175.53643 * 19 17 16 21 21 C 1.52792 * 107.88274 * 115.69776 * 20 19 17 22 22 C 1.50610 * 110.84539 * 47.46903 * 21 20 19 23 23 C 1.38978 * 117.60199 * 160.41935 * 22 21 20 24 24 C 1.37913 * 120.57927 * 179.38365 * 23 22 21 25 25 C 1.38258 * 119.82421 * 0.02562 * 24 23 22 26 26 C 1.37955 * 119.72172 * 0.20206 * 25 24 23 27 27 C 1.37661 * 122.87135 * 340.17930 * 22 21 20 28 28 C 1.46683 * 121.34383 * 355.56017 * 19 17 16 29 29 H 1.08993 * 109.47131 * 300.00316 * 1 2 3 30 30 H 1.08995 * 109.46870 * 60.00483 * 1 2 3 31 31 H 1.09003 * 109.46394 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47227 * 239.99725 * 2 1 3 33 33 H 1.08995 * 109.46870 * 119.99517 * 2 1 3 34 34 H 1.08992 * 109.46982 * 59.99875 * 3 2 1 35 35 H 1.09004 * 109.46837 * 299.99664 * 3 2 1 36 36 H 0.96999 * 120.00239 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.47104 * 60.00269 * 15 13 4 38 38 H 1.08995 * 109.47353 * 300.00104 * 15 13 4 39 39 H 0.97000 * 120.00617 * 0.02562 * 16 15 13 40 40 H 1.08993 * 109.78362 * 356.10158 * 20 19 17 41 41 H 1.09000 * 109.82126 * 235.31424 * 20 19 17 42 42 H 1.09004 * 109.19922 * 287.12272 * 21 20 19 43 43 H 1.08996 * 109.16825 * 167.80224 * 21 20 19 44 44 H 1.08001 * 119.71276 * 359.40826 * 23 22 21 45 45 H 1.08001 * 120.08491 * 180.02562 * 24 23 22 46 46 H 1.08000 * 120.13889 * 180.21456 * 25 24 23 47 47 H 1.07999 * 119.74601 * 179.97438 * 26 25 24 48 48 H 1.08993 * 109.44013 * 104.19782 * 28 19 17 49 49 H 1.09000 * 109.43742 * 344.32532 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1909 1.4981 1.1851 6 1 5.0806 0.9015 1.3227 7 6 3.7415 2.3217 2.2099 8 7 4.1505 2.1201 3.4423 9 14 2.5556 3.7157 1.8357 10 1 1.1603 3.2143 1.9186 11 1 2.7485 4.8081 2.8230 12 1 2.8153 4.2329 0.4682 13 6 4.1784 1.3881 -1.1668 14 8 5.3914 1.3886 -1.1672 15 6 3.4244 1.3267 -2.4701 16 7 4.3760 1.2743 -3.5828 17 6 3.9263 1.2149 -4.8520 18 8 2.7344 1.2936 -5.0788 19 7 4.7978 1.0683 -5.8696 20 6 4.3340 0.9028 -7.2572 21 6 4.8116 2.1126 -8.0590 22 6 6.2675 2.3913 -7.7926 23 6 6.9556 3.1634 -8.7209 24 6 8.2876 3.4668 -8.5316 25 6 8.9465 2.9996 -7.4095 26 6 8.2671 2.2290 -6.4887 27 6 6.9269 1.9206 -6.6796 28 6 6.2464 1.0668 -5.6392 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 1.9563 -0.8901 36 1 3.8365 2.6948 4.1578 37 1 2.7974 2.2128 -2.5693 38 1 2.7981 0.4348 -2.4859 39 1 5.3298 1.2822 -3.4061 40 1 3.2455 0.8524 -7.2788 41 1 4.7540 -0.0095 -7.6808 42 1 4.2221 2.9850 -7.7768 43 1 4.6729 1.9149 -9.1218 44 1 6.4428 3.5293 -9.5982 45 1 8.8145 4.0678 -9.2580 46 1 9.9886 3.2370 -7.2544 47 1 8.7816 1.8635 -5.6123 48 1 6.6231 0.0461 -5.7047 49 1 6.4565 1.4673 -4.6475 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116733052.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:36 Heat of formation + Delta-G solvation = -21.364697 kcal Electronic energy + Delta-G solvation = -30412.599957 eV Core-core repulsion = 26340.138213 eV Total energy + Delta-G solvation = -4072.461744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.73898 -39.50344 -38.75224 -36.20204 -35.70826 -34.30175 -33.09903 -32.78139 -31.64347 -31.53258 -29.68060 -27.84855 -25.99526 -25.76822 -24.43319 -23.57366 -22.44382 -21.43645 -21.16271 -19.61243 -19.14434 -17.97826 -17.10438 -16.99793 -16.21119 -16.08844 -15.84501 -15.53218 -15.17797 -14.99532 -14.76580 -14.49860 -14.29521 -14.19170 -13.86565 -13.55335 -13.39460 -13.22009 -13.05131 -12.80022 -12.66527 -12.45203 -12.34567 -12.27445 -11.94563 -11.87222 -11.74131 -11.43714 -11.26660 -11.06429 -10.93213 -10.87241 -10.56187 -10.11172 -10.06568 -9.86371 -9.14142 -9.12808 -8.94977 -8.80417 -8.68742 -8.55629 -7.83700 -6.44397 -4.07107 1.10644 1.14300 2.57979 2.98023 3.17636 3.22865 3.25259 3.49282 3.57142 3.91607 4.09861 4.36342 4.39704 4.46844 4.65736 4.78374 4.86720 4.89799 5.03316 5.06881 5.18324 5.28604 5.33434 5.35502 5.37204 5.44409 5.45654 5.61578 5.67207 5.70053 5.75647 5.78377 5.83595 5.88520 5.90401 6.10100 6.18414 6.20121 6.27822 6.31674 6.32476 6.38770 6.54582 6.59430 6.75357 6.77574 6.97121 7.48023 8.03715 8.19553 8.38926 8.66955 8.84661 9.22428 9.61773 10.67061 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.002681 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.734009 B =10440.277780 C =11522.565578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.080 3.920 4 N -0.457 5.457 5 C -0.315 4.315 6 H 0.106 0.894 7 C 0.063 3.937 8 N -0.863 5.863 9 Si 0.877 3.123 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.264 1.264 13 C 0.458 3.542 14 O -0.565 6.565 15 C 0.120 3.880 16 N -0.727 5.727 17 C 0.714 3.286 18 O -0.593 6.593 19 N -0.631 5.631 20 C 0.131 3.869 21 C -0.098 4.098 22 C -0.067 4.067 23 C -0.122 4.122 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.111 4.111 27 C -0.093 4.093 28 C 0.150 3.850 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.275 0.725 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.406 0.594 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.126 0.874 48 H 0.082 0.918 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.562 -0.911 -21.910 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.043 4.043 4 N -0.178 5.178 5 C -0.442 4.442 6 H 0.123 0.877 7 C -0.143 4.143 8 N -0.499 5.499 9 Si 0.705 3.295 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.188 1.188 13 C 0.246 3.754 14 O -0.447 6.447 15 C -0.009 4.009 16 N -0.386 5.386 17 C 0.416 3.584 18 O -0.472 6.472 19 N -0.369 5.369 20 C 0.008 3.992 21 C -0.136 4.136 22 C -0.067 4.067 23 C -0.140 4.140 24 C -0.138 4.138 25 C -0.140 4.140 26 C -0.129 4.129 27 C -0.094 4.094 28 C 0.027 3.973 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.246 0.754 40 H 0.118 0.882 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.144 0.856 48 H 0.100 0.900 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.284 -0.810 -21.776 21.829 hybrid contribution -0.073 0.929 0.121 0.940 sum 1.211 0.119 -21.655 21.689 Atomic orbital electron populations 1.21729 0.95971 1.01407 1.01645 1.21868 0.95168 0.97464 1.02908 1.22094 0.82822 0.97213 1.02164 1.43669 1.03924 1.64824 1.05398 1.19013 1.12119 1.25615 0.87482 0.87678 1.25371 0.97256 0.96896 0.94807 1.69706 1.43645 1.37334 0.99231 0.87029 0.80493 0.82694 0.79318 1.19715 1.21331 1.18809 1.20168 0.88209 0.82336 0.84711 1.90528 1.13680 1.54054 1.86469 1.21046 0.91511 1.03295 0.85000 1.44983 1.11277 1.78785 1.03575 1.15636 0.84702 0.77740 0.80373 1.90888 1.14020 1.58618 1.83649 1.47110 1.05155 1.77793 1.06857 1.21429 1.01647 0.96828 0.79265 1.20879 0.92261 0.99800 1.00701 1.19502 0.95614 0.97585 0.94027 1.21168 0.94711 0.98902 0.99229 1.21079 0.94767 1.00051 0.97886 1.21068 1.00015 0.98316 0.94605 1.21099 0.93612 0.98565 0.99661 1.19793 0.94328 0.99455 0.95850 1.20446 0.79914 0.99242 0.97734 0.92744 0.92870 0.92783 0.92244 0.90585 0.90281 0.91815 0.91457 0.89721 0.89649 0.75429 0.88175 0.91060 0.89998 0.89667 0.86148 0.86125 0.85887 0.85555 0.89965 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.70 16 2 C -0.14 -2.29 6.22 -26.73 -0.17 -2.46 16 3 C 0.08 1.58 3.85 -4.04 -0.02 1.57 16 4 N -0.46 -10.73 2.15 -114.81 -0.25 -10.98 16 5 C -0.32 -8.66 9.34 -14.93 -0.14 -8.80 16 6 H 0.11 3.24 7.96 -52.49 -0.42 2.82 16 7 C 0.06 1.71 5.34 -17.47 -0.09 1.61 16 8 N -0.86 -24.50 13.96 55.50 0.77 -23.72 16 9 Si 0.88 20.30 25.18 -169.99 -4.28 16.02 16 10 H -0.27 -5.75 6.41 56.52 0.36 -5.39 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 13 C 0.46 10.29 7.69 -10.99 -0.08 10.20 16 14 O -0.56 -14.27 15.57 5.55 0.09 -14.18 16 15 C 0.12 2.19 4.75 -5.20 -0.02 2.17 16 16 N -0.73 -12.34 5.43 -66.42 -0.36 -12.70 16 17 C 0.71 11.71 8.32 -86.91 -0.72 10.98 16 18 O -0.59 -11.27 15.85 5.29 0.08 -11.19 16 19 N -0.63 -8.15 2.93 -180.12 -0.53 -8.68 16 20 C 0.13 1.37 6.43 -3.74 -0.02 1.35 16 21 C -0.10 -0.90 5.86 -28.03 -0.16 -1.07 16 22 C -0.07 -0.69 5.76 -104.60 -0.60 -1.29 16 23 C -0.12 -1.10 9.59 -39.43 -0.38 -1.48 16 24 C -0.12 -1.03 10.04 -39.69 -0.40 -1.42 16 25 C -0.12 -1.08 10.05 -39.68 -0.40 -1.48 16 26 C -0.11 -1.09 9.62 -39.46 -0.38 -1.46 16 27 C -0.09 -1.00 5.82 -104.55 -0.61 -1.61 16 28 C 0.15 1.66 6.08 -5.04 -0.03 1.63 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.95 6.90 -51.93 -0.36 0.59 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.08 1.66 3.28 -51.93 -0.17 1.49 16 35 H 0.06 1.10 6.55 -51.93 -0.34 0.76 16 36 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.08 1.52 7.40 -51.93 -0.38 1.14 16 38 H 0.09 1.47 6.83 -51.93 -0.35 1.11 16 39 H 0.41 6.74 5.09 -40.82 -0.21 6.53 16 40 H 0.10 1.13 7.09 -51.93 -0.37 0.76 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 44 H 0.12 0.84 8.05 -52.49 -0.42 0.42 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 47 H 0.13 1.06 8.05 -52.49 -0.42 0.63 16 48 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.09 1.09 5.95 -51.93 -0.31 0.78 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -32.94 389.03 -9.63 -42.57 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -7.16 Total: 10.26 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -3.86 Total: 6.73 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.36 Total: -56.08 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: 0.17 Total: -25.37 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.28 Total: 16.02 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.94 -9.63 -42.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116733052.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.204 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds