Wall clock time and date at job start Wed Apr 1 2020 03:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46873 * 2 1 4 4 N 1.46498 * 109.46939 * 180.02562 * 3 2 1 5 5 C 1.37096 * 119.99731 * 267.31286 * 4 3 2 6 6 H 1.07999 * 119.99700 * 139.90620 * 5 4 3 7 7 C 1.38947 * 120.00384 * 319.91099 * 5 4 3 8 8 N 1.31404 * 120.00224 * 161.35975 * 7 5 4 9 9 Si 1.86803 * 119.99717 * 341.36405 * 7 5 4 10 10 H 1.48498 * 109.47042 * 88.47611 * 9 7 5 11 11 H 1.48495 * 109.46993 * 208.47352 * 9 7 5 12 12 H 1.48495 * 109.47203 * 328.47651 * 9 7 5 13 13 C 1.34781 * 120.00222 * 87.31798 * 4 3 2 14 14 O 1.21291 * 119.99509 * 179.97438 * 13 4 3 15 15 C 1.50695 * 119.99798 * 359.97438 * 13 4 3 16 16 N 1.46499 * 109.46802 * 180.02562 * 15 13 4 17 17 C 1.34784 * 120.00005 * 180.02562 * 16 15 13 18 18 O 1.21583 * 119.99838 * 4.83918 * 17 16 15 19 19 N 1.34778 * 119.99933 * 184.84266 * 17 16 15 20 20 C 1.47240 * 121.33910 * 175.53643 * 19 17 16 21 21 C 1.52792 * 107.88274 * 115.69776 * 20 19 17 22 22 C 1.50610 * 110.84539 * 47.46903 * 21 20 19 23 23 C 1.38978 * 117.60199 * 160.41935 * 22 21 20 24 24 C 1.37913 * 120.57927 * 179.38365 * 23 22 21 25 25 C 1.38258 * 119.82421 * 0.02562 * 24 23 22 26 26 C 1.37955 * 119.72172 * 0.20206 * 25 24 23 27 27 C 1.37661 * 122.87135 * 340.17930 * 22 21 20 28 28 C 1.46683 * 121.34383 * 355.56017 * 19 17 16 29 29 H 1.08993 * 109.47131 * 300.00316 * 1 2 3 30 30 H 1.08995 * 109.46870 * 60.00483 * 1 2 3 31 31 H 1.09003 * 109.46394 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47227 * 239.99725 * 2 1 3 33 33 H 1.08995 * 109.46870 * 119.99517 * 2 1 3 34 34 H 1.08992 * 109.46982 * 59.99875 * 3 2 1 35 35 H 1.09004 * 109.46837 * 299.99664 * 3 2 1 36 36 H 0.96999 * 120.00239 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.47104 * 60.00269 * 15 13 4 38 38 H 1.08995 * 109.47353 * 300.00104 * 15 13 4 39 39 H 0.97000 * 120.00617 * 0.02562 * 16 15 13 40 40 H 1.08993 * 109.78362 * 356.10158 * 20 19 17 41 41 H 1.09000 * 109.82126 * 235.31424 * 20 19 17 42 42 H 1.09004 * 109.19922 * 287.12272 * 21 20 19 43 43 H 1.08996 * 109.16825 * 167.80224 * 21 20 19 44 44 H 1.08001 * 119.71276 * 359.40826 * 23 22 21 45 45 H 1.08001 * 120.08491 * 180.02562 * 24 23 22 46 46 H 1.08000 * 120.13889 * 180.21456 * 25 24 23 47 47 H 1.07999 * 119.74601 * 179.97438 * 26 25 24 48 48 H 1.08993 * 109.44013 * 104.19782 * 28 19 17 49 49 H 1.09000 * 109.43742 * 344.32532 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1909 1.4981 1.1851 6 1 5.0806 0.9015 1.3227 7 6 3.7415 2.3217 2.2099 8 7 4.1505 2.1201 3.4423 9 14 2.5556 3.7157 1.8357 10 1 1.1603 3.2143 1.9186 11 1 2.7485 4.8081 2.8230 12 1 2.8153 4.2329 0.4682 13 6 4.1784 1.3881 -1.1668 14 8 5.3914 1.3886 -1.1672 15 6 3.4244 1.3267 -2.4701 16 7 4.3760 1.2743 -3.5828 17 6 3.9263 1.2149 -4.8520 18 8 2.7344 1.2936 -5.0788 19 7 4.7978 1.0683 -5.8696 20 6 4.3340 0.9028 -7.2572 21 6 4.8116 2.1126 -8.0590 22 6 6.2675 2.3913 -7.7926 23 6 6.9556 3.1634 -8.7209 24 6 8.2876 3.4668 -8.5316 25 6 8.9465 2.9996 -7.4095 26 6 8.2671 2.2290 -6.4887 27 6 6.9269 1.9206 -6.6796 28 6 6.2464 1.0668 -5.6392 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 1.9563 -0.8901 36 1 3.8365 2.6948 4.1578 37 1 2.7974 2.2128 -2.5693 38 1 2.7981 0.4348 -2.4859 39 1 5.3298 1.2822 -3.4061 40 1 3.2455 0.8524 -7.2788 41 1 4.7540 -0.0095 -7.6808 42 1 4.2221 2.9850 -7.7768 43 1 4.6729 1.9149 -9.1218 44 1 6.4428 3.5293 -9.5982 45 1 8.8145 4.0678 -9.2580 46 1 9.9886 3.2370 -7.2544 47 1 8.7816 1.8635 -5.6123 48 1 6.6231 0.0461 -5.7047 49 1 6.4565 1.4673 -4.6475 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116733052.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:35 Heat of formation + Delta-G solvation = -41.566978 kcal Electronic energy + Delta-G solvation = -30413.475994 eV Core-core repulsion = 26340.138213 eV Total energy + Delta-G solvation = -4073.337781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.80275 -40.86565 -40.06826 -37.50677 -37.10021 -35.68302 -34.68690 -33.83969 -33.36241 -32.36832 -30.54049 -29.31068 -27.44593 -26.84105 -26.00066 -24.55023 -23.15887 -22.80681 -22.16289 -21.13310 -20.45337 -19.15420 -18.94618 -18.12264 -17.69770 -17.26409 -17.15104 -16.87554 -16.40128 -16.05037 -15.86537 -15.73004 -15.56048 -15.46928 -14.94487 -14.88301 -14.61945 -14.53063 -14.27170 -14.12449 -13.94149 -13.70860 -13.43974 -13.38841 -13.19009 -13.09404 -13.04665 -12.52828 -12.46270 -12.40905 -12.12801 -11.98921 -11.90348 -11.67268 -11.49223 -11.41148 -11.04536 -10.54925 -10.36602 -9.80908 -9.76193 -9.56480 -9.50995 -8.53211 -6.21085 0.39534 0.45095 1.16206 1.29281 1.40852 1.43645 1.76060 2.00518 2.14573 2.51288 2.77491 2.85843 2.94040 3.60426 3.65551 3.75089 3.93642 3.94452 4.08353 4.10045 4.20158 4.27288 4.29676 4.30984 4.33753 4.44740 4.46845 4.59188 4.59998 4.63953 4.65734 4.74573 4.83024 4.93278 4.97136 5.09009 5.17824 5.19439 5.22411 5.28470 5.34895 5.44663 5.53406 5.56408 5.59087 5.63213 5.85384 6.00889 6.10118 6.46616 6.78902 6.85226 7.19814 7.39932 7.70615 8.63030 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.002681 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.734009 B =10440.277780 C =11522.565578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.074 3.926 4 N -0.467 5.467 5 C -0.329 4.329 6 H 0.050 0.950 7 C 0.018 3.982 8 N -0.908 5.908 9 Si 0.940 3.060 10 H -0.233 1.233 11 H -0.287 1.287 12 H -0.263 1.263 13 C 0.456 3.544 14 O -0.601 6.601 15 C 0.134 3.866 16 N -0.731 5.731 17 C 0.712 3.288 18 O -0.620 6.620 19 N -0.627 5.627 20 C 0.127 3.873 21 C -0.091 4.091 22 C -0.082 4.082 23 C -0.127 4.127 24 C -0.123 4.123 25 C -0.129 4.129 26 C -0.125 4.125 27 C -0.111 4.111 28 C 0.150 3.850 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.281 0.719 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.407 0.593 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.114 0.886 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.141 0.859 47 H 0.132 0.868 48 H 0.097 0.903 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 -0.040 -24.816 24.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C -0.048 4.048 4 N -0.188 5.188 5 C -0.457 4.457 6 H 0.068 0.932 7 C -0.185 4.185 8 N -0.545 5.545 9 Si 0.764 3.236 10 H -0.157 1.157 11 H -0.214 1.214 12 H -0.187 1.187 13 C 0.245 3.755 14 O -0.486 6.486 15 C 0.006 3.994 16 N -0.390 5.390 17 C 0.414 3.586 18 O -0.501 6.501 19 N -0.363 5.363 20 C 0.005 3.995 21 C -0.129 4.129 22 C -0.083 4.083 23 C -0.144 4.144 24 C -0.141 4.141 25 C -0.147 4.147 26 C -0.143 4.143 27 C -0.112 4.112 28 C 0.027 3.973 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.246 0.754 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.132 0.868 44 H 0.159 0.841 45 H 0.162 0.838 46 H 0.159 0.841 47 H 0.150 0.850 48 H 0.115 0.885 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.399 0.037 -24.716 24.719 hybrid contribution 0.610 0.595 0.962 1.285 sum 0.211 0.632 -23.753 23.763 Atomic orbital electron populations 1.21703 0.92966 1.02944 1.02541 1.21817 0.97669 0.95394 1.02072 1.22339 0.80126 0.99296 1.03044 1.43758 1.05615 1.65077 1.04352 1.18617 1.11480 1.25852 0.89714 0.93210 1.26097 0.99398 0.98893 0.94092 1.69818 1.45728 1.38611 1.00371 0.86016 0.80054 0.78712 0.78819 1.15750 1.21369 1.18694 1.20867 0.88015 0.80655 0.85915 1.90504 1.15601 1.55200 1.87294 1.20872 0.91146 1.04550 0.82823 1.44968 1.11081 1.79270 1.03724 1.15709 0.84751 0.77636 0.80511 1.90860 1.15209 1.60036 1.84045 1.47203 1.05561 1.76468 1.07078 1.21656 1.01287 0.98537 0.78037 1.20843 0.91448 0.98518 1.02096 1.19705 0.96146 0.98134 0.94267 1.21450 0.95043 0.98356 0.99584 1.21430 0.94835 0.99722 0.98086 1.21369 1.00991 0.97816 0.94492 1.21280 0.93580 0.99085 1.00356 1.19835 0.94852 1.00315 0.96163 1.20518 0.78886 1.00317 0.97539 0.92779 0.91001 0.91043 0.91414 0.93211 0.91307 0.88701 0.90951 0.88585 0.87931 0.75362 0.89096 0.88950 0.91278 0.86803 0.84070 0.83796 0.84109 0.85008 0.88490 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.91 71.98 0.71 -2.79 16 2 C -0.13 -4.24 6.22 30.60 0.19 -4.05 16 3 C 0.07 2.79 3.85 86.38 0.33 3.12 16 4 N -0.47 -22.14 2.15 -635.54 -1.36 -23.51 16 5 C -0.33 -18.90 9.34 84.04 0.78 -18.11 16 6 H 0.05 3.33 7.96 -2.91 -0.02 3.31 16 7 C 0.02 1.00 5.34 84.93 0.45 1.45 16 8 N -0.91 -53.36 13.96 21.66 0.30 -53.06 16 9 Si 0.94 41.45 25.18 68.60 1.73 43.18 16 10 H -0.23 -8.86 6.41 99.48 0.64 -8.22 16 11 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 13 C 0.46 20.72 7.69 87.65 0.67 21.40 16 14 O -0.60 -31.52 15.57 -3.06 -0.05 -31.56 16 15 C 0.13 4.76 4.75 85.63 0.41 5.17 16 16 N -0.73 -24.48 5.43 -482.30 -2.62 -27.10 16 17 C 0.71 22.75 8.32 179.05 1.49 24.24 16 18 O -0.62 -22.82 15.85 -3.98 -0.06 -22.88 16 19 N -0.63 -15.60 2.93 -842.03 -2.47 -18.07 16 20 C 0.13 2.44 6.43 86.17 0.55 3.00 16 21 C -0.09 -1.50 5.86 29.75 0.17 -1.32 16 22 C -0.08 -1.54 5.76 -19.85 -0.11 -1.65 16 23 C -0.13 -1.97 9.59 22.37 0.21 -1.76 16 24 C -0.12 -1.80 10.04 22.20 0.22 -1.58 16 25 C -0.13 -2.07 10.05 22.21 0.22 -1.85 16 26 C -0.12 -2.33 9.62 22.35 0.22 -2.12 16 27 C -0.11 -2.27 5.82 -19.82 -0.12 -2.39 16 28 C 0.15 3.25 6.08 85.63 0.52 3.77 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 2.06 6.90 -2.39 -0.02 2.04 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.07 2.73 3.28 -2.39 -0.01 2.72 16 35 H 0.09 2.97 6.55 -2.38 -0.02 2.96 16 36 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.10 3.23 7.40 -2.39 -0.02 3.21 16 38 H 0.10 3.32 6.83 -2.39 -0.02 3.30 16 39 H 0.41 13.67 5.09 -92.71 -0.47 13.20 16 40 H 0.09 1.94 7.09 -2.39 -0.02 1.93 16 41 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.11 1.19 8.11 -2.39 -0.02 1.17 16 44 H 0.14 1.53 8.05 -2.91 -0.02 1.51 16 45 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 46 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 47 H 0.13 2.18 8.05 -2.91 -0.02 2.16 16 48 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 49 H 0.08 1.95 5.95 -2.39 -0.01 1.94 16 Total: -1.00 -74.85 389.03 2.84 -72.01 By element: Atomic # 1 Polarization: 36.05 SS G_CDS: 0.43 Total: 36.48 kcal Atomic # 6 Polarization: 17.59 SS G_CDS: 6.94 Total: 24.53 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -6.15 Total: -121.74 kcal Atomic # 8 Polarization: -54.33 SS G_CDS: -0.11 Total: -54.44 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 1.73 Total: 43.18 kcal Total: -74.85 2.84 -72.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116733052.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.442 kcal (2) G-P(sol) polarization free energy of solvation -74.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds