Wall clock time and date at job start Wed Apr 1 2020 03:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46787 * 2 1 4 4 N 1.46899 * 109.46926 * 179.97438 * 3 2 1 5 5 C 1.48050 * 110.99894 * 69.87624 * 4 3 2 6 6 C 1.51194 * 105.67573 * 91.76957 * 5 4 3 7 7 C 1.38264 * 131.73510 * 197.46685 * 6 5 4 8 8 C 1.38268 * 120.19060 * 180.02562 * 7 6 5 9 9 C 1.38113 * 120.08999 * 0.02671 * 8 7 6 10 10 C 1.38922 * 119.91417 * 359.97438 * 9 8 7 11 11 N 1.39725 * 120.06181 * 180.02562 * 10 9 8 12 12 C 1.34773 * 120.00261 * 34.03058 * 11 10 9 13 13 O 1.21377 * 119.99849 * 5.65711 * 12 11 10 14 14 C 1.49360 * 120.00147 * 185.65474 * 12 11 10 15 15 O 1.21355 * 119.99860 * 0.02562 * 14 12 11 16 16 N 1.34780 * 119.99868 * 179.97438 * 14 12 11 17 17 C 1.46500 * 119.99502 * 179.97438 * 16 14 12 18 18 H 1.08996 * 109.47386 * 325.00237 * 17 16 14 19 19 C 1.52998 * 109.46941 * 85.00623 * 17 16 14 20 20 C 1.50706 * 109.46867 * 205.00075 * 17 16 14 21 21 H 1.08004 * 119.99951 * 334.84652 * 20 17 16 22 22 C 1.37879 * 119.99747 * 154.84153 * 20 17 16 23 23 N 1.31512 * 119.99604 * 174.92376 * 22 20 17 24 24 Si 1.86795 * 120.00219 * 354.92683 * 22 20 17 25 25 H 1.48502 * 109.47077 * 275.04230 * 24 22 20 26 26 H 1.48507 * 109.46996 * 35.03939 * 24 22 20 27 27 H 1.48494 * 109.47200 * 155.04071 * 24 22 20 28 28 C 1.38299 * 108.25636 * 17.76593 * 6 5 4 29 29 C 1.48052 * 111.00105 * 184.85619 * 4 3 2 30 30 H 1.09000 * 109.46910 * 299.99459 * 1 2 3 31 31 H 1.09002 * 109.47495 * 59.99786 * 1 2 3 32 32 H 1.09000 * 109.47022 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46910 * 240.00541 * 2 1 3 34 34 H 1.09003 * 109.46973 * 120.00156 * 2 1 3 35 35 H 1.09000 * 109.46954 * 60.00568 * 3 2 1 36 36 H 1.08992 * 109.47339 * 300.00333 * 3 2 1 37 37 H 1.09009 * 110.20987 * 332.71775 * 5 4 3 38 38 H 1.09006 * 110.27625 * 210.85682 * 5 4 3 39 39 H 1.08001 * 119.90140 * 0.03081 * 7 6 5 40 40 H 1.07996 * 119.95483 * 179.97438 * 8 7 6 41 41 H 1.07999 * 120.04489 * 180.02562 * 9 8 7 42 42 H 0.96999 * 119.99876 * 214.03327 * 11 10 9 43 43 H 0.96999 * 119.99786 * 0.02562 * 16 14 12 44 44 H 1.08995 * 109.47080 * 174.98783 * 19 17 16 45 45 H 1.09003 * 109.46910 * 294.98411 * 19 17 16 46 46 H 1.09004 * 109.47251 * 54.98265 * 19 17 16 47 47 H 0.97004 * 119.99844 * 180.02562 * 23 22 20 48 48 H 1.09001 * 110.21229 * 27.27367 * 29 4 3 49 49 H 1.08999 * 110.21199 * 149.09497 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0400 0.9669 -1.2969 6 6 4.2287 2.2073 -2.1406 7 6 4.3869 2.3781 -3.5035 8 6 4.5449 3.6462 -4.0316 9 6 4.5458 4.7480 -3.1987 10 6 4.3873 4.5810 -1.8287 11 7 4.3872 5.6935 -0.9834 12 6 3.8673 6.8623 -1.4077 13 8 3.3074 6.9226 -2.4829 14 6 3.9800 8.0832 -0.5547 15 8 4.5401 8.0229 0.5201 16 7 3.4604 9.2521 -0.9793 17 6 3.5705 10.4495 -0.1424 18 1 3.4966 10.1669 0.9077 19 6 4.9194 11.1259 -0.3949 20 6 2.4572 11.4058 -0.4849 21 1 2.0009 11.3751 -1.4634 22 6 2.0212 12.3197 0.4509 23 7 1.1203 13.2193 0.1213 24 14 2.7101 12.2801 2.1867 25 1 1.9486 11.2975 2.9992 26 1 4.1404 11.8833 2.1427 27 1 2.5888 13.6278 2.7982 28 6 4.2345 3.3059 -1.3005 29 6 4.0395 2.8199 0.1176 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 3.3264 0.2935 -1.7718 38 1 4.9948 0.4614 -1.1518 39 1 4.3869 1.5186 -4.1574 40 1 4.6685 3.7752 -5.0966 41 1 4.6689 5.7381 -3.6120 42 1 4.7614 5.6246 -0.0911 43 1 3.0131 9.3003 -1.8386 44 1 4.9654 12.0631 0.1597 45 1 5.7232 10.4681 -0.0640 46 1 5.0308 11.3281 -1.4602 47 1 0.8138 13.8625 0.7795 48 1 3.3254 3.4552 0.6416 49 1 4.9935 2.8124 0.6447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122828103.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:45 Heat of formation + Delta-G solvation = -33.146539 kcal Electronic energy + Delta-G solvation = -29862.554766 eV Core-core repulsion = 25789.582123 eV Total energy + Delta-G solvation = -4072.972643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.32922 -40.23442 -38.52568 -37.34154 -35.54983 -34.74734 -34.18961 -32.45394 -30.63915 -30.48133 -30.00342 -27.81182 -26.66556 -25.44633 -24.95645 -23.09736 -22.26470 -21.54078 -21.10155 -20.29496 -19.74947 -18.85514 -17.29907 -16.88093 -16.48695 -16.40620 -15.87164 -15.72171 -15.55723 -15.27310 -14.99109 -14.55655 -14.27679 -14.22438 -13.72700 -13.55940 -13.38009 -13.33034 -13.12405 -12.68566 -12.58492 -12.48241 -12.41864 -12.18542 -11.94104 -11.77536 -11.68713 -11.53059 -11.34075 -11.25781 -11.22207 -10.97039 -10.92360 -10.55896 -10.52800 -9.94917 -9.34702 -9.28533 -9.12633 -8.80271 -8.78758 -8.42626 -8.31193 -6.29482 -4.33990 0.91347 1.07094 1.75565 2.51648 3.20397 3.28654 3.33531 3.36937 3.52818 3.60535 3.91136 4.04577 4.25377 4.35862 4.56535 4.70211 4.79118 4.84858 4.86595 4.97914 5.02394 5.10158 5.13462 5.21948 5.30481 5.32263 5.37368 5.41095 5.47811 5.52628 5.67401 5.71397 5.81535 5.91134 5.97999 6.06753 6.18413 6.18964 6.27554 6.38634 6.42083 6.52389 6.60905 6.72432 6.74144 6.89140 7.07202 7.17396 7.33371 7.66960 7.97433 8.34884 8.47961 8.72114 9.29693 10.82122 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.002417 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.473643 B =11582.970342 C =12565.445032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C 0.038 3.962 4 N -0.499 5.499 5 C 0.076 3.924 6 C -0.107 4.107 7 C -0.116 4.116 8 C -0.096 4.096 9 C -0.119 4.119 10 C 0.175 3.825 11 N -0.652 5.652 12 C 0.508 3.492 13 O -0.500 6.500 14 C 0.495 3.505 15 O -0.538 6.538 16 N -0.661 5.661 17 C 0.233 3.767 18 H 0.052 0.948 19 C -0.152 4.152 20 C -0.537 4.537 21 H 0.082 0.918 22 C 0.083 3.917 23 N -0.885 5.885 24 Si 0.871 3.129 25 H -0.272 1.272 26 H -0.257 1.257 27 H -0.284 1.284 28 C -0.154 4.154 29 C 0.080 3.920 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.422 0.578 43 H 0.408 0.592 44 H 0.060 0.940 45 H 0.031 0.969 46 H 0.049 0.951 47 H 0.269 0.731 48 H 0.081 0.919 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.772 -26.214 -3.734 27.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.090 4.090 4 N -0.219 5.219 5 C -0.052 4.052 6 C -0.109 4.109 7 C -0.135 4.135 8 C -0.115 4.115 9 C -0.139 4.139 10 C 0.080 3.920 11 N -0.299 5.299 12 C 0.291 3.709 13 O -0.373 6.373 14 C 0.274 3.726 15 O -0.417 6.417 16 N -0.311 5.311 17 C 0.131 3.869 18 H 0.070 0.930 19 C -0.211 4.211 20 C -0.574 4.574 21 H 0.100 0.900 22 C -0.122 4.122 23 N -0.521 5.521 24 Si 0.697 3.303 25 H -0.198 1.198 26 H -0.181 1.181 27 H -0.210 1.210 28 C -0.158 4.158 29 C -0.048 4.048 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.156 0.844 42 H 0.260 0.740 43 H 0.243 0.757 44 H 0.079 0.921 45 H 0.050 0.950 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.099 0.901 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.773 -26.262 -3.159 27.074 hybrid contribution -0.100 0.755 0.141 0.775 sum 5.673 -25.507 -3.018 26.304 Atomic orbital electron populations 1.21745 0.95429 1.01824 1.02063 1.21514 0.95603 0.95936 1.02589 1.22449 0.87255 0.97684 1.01619 1.65221 1.08646 1.18088 1.29988 1.21819 1.01617 0.94388 0.87378 1.20940 1.00341 0.95770 0.93892 1.20467 1.02230 0.97420 0.93379 1.20978 0.99022 0.91636 0.99842 1.21160 1.00818 1.00427 0.91519 1.17171 0.99874 0.84589 0.90359 1.43246 1.59314 1.08601 1.18722 1.20883 0.78219 0.84745 0.87038 1.90761 1.39440 1.84905 1.22173 1.19742 0.81726 0.84563 0.86579 1.90723 1.43620 1.85294 1.22013 1.46445 1.53031 1.08309 1.23267 1.19284 0.94874 0.81272 0.91508 0.93017 1.22315 0.97330 1.00248 1.01178 1.20962 1.17988 1.16306 1.02180 0.90001 1.24869 0.94130 0.94585 0.98643 1.69874 1.29721 1.17317 1.35202 0.86968 0.80883 0.77730 0.84678 1.19784 1.18132 1.20985 1.20833 1.04906 0.92294 0.97738 1.21698 1.01758 0.89068 0.92319 0.92506 0.92751 0.92452 0.92021 0.91044 0.90328 0.94099 0.89818 0.88388 0.85934 0.85198 0.84352 0.73989 0.75682 0.92101 0.95040 0.93193 0.92092 0.90065 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.12 -0.83 5.97 -26.73 -0.16 -0.99 16 3 C 0.04 0.33 4.64 -3.82 -0.02 0.31 16 4 N -0.50 -4.46 5.50 -234.91 -1.29 -5.76 16 5 C 0.08 0.61 6.41 -4.10 -0.03 0.59 16 6 C -0.11 -1.06 6.12 -104.35 -0.64 -1.70 16 7 C -0.12 -1.08 10.04 -39.56 -0.40 -1.48 16 8 C -0.10 -0.99 10.04 -39.62 -0.40 -1.38 16 9 C -0.12 -1.51 8.65 -39.37 -0.34 -1.85 16 10 C 0.17 2.23 6.26 -83.78 -0.52 1.71 16 11 N -0.65 -8.78 5.29 -10.31 -0.05 -8.83 16 12 C 0.51 8.28 7.61 -11.63 -0.09 8.19 16 13 O -0.50 -8.82 14.22 5.47 0.08 -8.74 16 14 C 0.50 9.32 7.85 -11.63 -0.09 9.23 16 15 O -0.54 -10.98 16.15 5.49 0.09 -10.89 16 16 N -0.66 -13.41 5.06 -55.39 -0.28 -13.69 16 17 C 0.23 5.38 2.12 -69.08 -0.15 5.23 16 18 H 0.05 1.28 5.34 -51.93 -0.28 1.00 16 19 C -0.15 -3.22 9.10 37.16 0.34 -2.88 16 20 C -0.54 -14.20 9.06 -34.44 -0.31 -14.51 16 21 H 0.08 2.31 8.02 -52.48 -0.42 1.89 16 22 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 23 N -0.89 -25.70 13.96 55.43 0.77 -24.93 16 24 Si 0.87 20.71 26.20 -169.99 -4.45 16.26 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.26 -5.88 6.15 56.52 0.35 -5.53 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 C -0.15 -1.71 6.14 -104.14 -0.64 -2.35 16 29 C 0.08 0.76 6.61 -4.11 -0.03 0.73 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.41 6.53 -51.93 -0.34 0.07 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.68 7.97 -51.93 -0.41 0.27 16 36 H 0.04 0.41 8.00 -51.93 -0.42 -0.01 16 37 H 0.08 0.59 6.17 -51.92 -0.32 0.27 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.14 1.89 6.48 -52.49 -0.34 1.55 16 42 H 0.42 5.07 8.30 -40.82 -0.34 4.73 16 43 H 0.41 7.85 8.03 -40.82 -0.33 7.52 16 44 H 0.06 1.31 6.74 -51.93 -0.35 0.96 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.08 0.80 7.69 -51.93 -0.40 0.40 16 49 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 397.56 15.07 5.99 5.99 Total: -1.00 -30.36 397.56 -9.71 -40.07 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -7.36 Total: 10.13 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -3.20 Total: 0.39 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.85 Total: -53.21 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.17 Total: -19.63 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.45 Total: 16.26 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.36 -9.71 -40.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122828103.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.922 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds