Wall clock time and date at job start Wed Apr 1 2020 03:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46787 * 2 1 4 4 N 1.46899 * 109.46926 * 179.97438 * 3 2 1 5 5 C 1.48050 * 110.99894 * 69.87624 * 4 3 2 6 6 C 1.51194 * 105.67573 * 91.76957 * 5 4 3 7 7 C 1.38264 * 131.73510 * 197.46685 * 6 5 4 8 8 C 1.38268 * 120.19060 * 180.02562 * 7 6 5 9 9 C 1.38113 * 120.08999 * 0.02671 * 8 7 6 10 10 C 1.38922 * 119.91417 * 359.97438 * 9 8 7 11 11 N 1.39725 * 120.06181 * 180.02562 * 10 9 8 12 12 C 1.34773 * 120.00261 * 34.03058 * 11 10 9 13 13 O 1.21377 * 119.99849 * 5.65711 * 12 11 10 14 14 C 1.49360 * 120.00147 * 185.65474 * 12 11 10 15 15 O 1.21355 * 119.99860 * 0.02562 * 14 12 11 16 16 N 1.34780 * 119.99868 * 179.97438 * 14 12 11 17 17 C 1.46500 * 119.99502 * 179.97438 * 16 14 12 18 18 H 1.08996 * 109.47386 * 325.00237 * 17 16 14 19 19 C 1.52998 * 109.46941 * 85.00623 * 17 16 14 20 20 C 1.50706 * 109.46867 * 205.00075 * 17 16 14 21 21 H 1.08004 * 119.99951 * 334.84652 * 20 17 16 22 22 C 1.37879 * 119.99747 * 154.84153 * 20 17 16 23 23 N 1.31512 * 119.99604 * 174.92376 * 22 20 17 24 24 Si 1.86795 * 120.00219 * 354.92683 * 22 20 17 25 25 H 1.48502 * 109.47077 * 275.04230 * 24 22 20 26 26 H 1.48507 * 109.46996 * 35.03939 * 24 22 20 27 27 H 1.48494 * 109.47200 * 155.04071 * 24 22 20 28 28 C 1.38299 * 108.25636 * 17.76593 * 6 5 4 29 29 C 1.48052 * 111.00105 * 184.85619 * 4 3 2 30 30 H 1.09000 * 109.46910 * 299.99459 * 1 2 3 31 31 H 1.09002 * 109.47495 * 59.99786 * 1 2 3 32 32 H 1.09000 * 109.47022 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46910 * 240.00541 * 2 1 3 34 34 H 1.09003 * 109.46973 * 120.00156 * 2 1 3 35 35 H 1.09000 * 109.46954 * 60.00568 * 3 2 1 36 36 H 1.08992 * 109.47339 * 300.00333 * 3 2 1 37 37 H 1.09009 * 110.20987 * 332.71775 * 5 4 3 38 38 H 1.09006 * 110.27625 * 210.85682 * 5 4 3 39 39 H 1.08001 * 119.90140 * 0.03081 * 7 6 5 40 40 H 1.07996 * 119.95483 * 179.97438 * 8 7 6 41 41 H 1.07999 * 120.04489 * 180.02562 * 9 8 7 42 42 H 0.96999 * 119.99876 * 214.03327 * 11 10 9 43 43 H 0.96999 * 119.99786 * 0.02562 * 16 14 12 44 44 H 1.08995 * 109.47080 * 174.98783 * 19 17 16 45 45 H 1.09003 * 109.46910 * 294.98411 * 19 17 16 46 46 H 1.09004 * 109.47251 * 54.98265 * 19 17 16 47 47 H 0.97004 * 119.99844 * 180.02562 * 23 22 20 48 48 H 1.09001 * 110.21229 * 27.27367 * 29 4 3 49 49 H 1.08999 * 110.21199 * 149.09497 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0400 0.9669 -1.2969 6 6 4.2287 2.2073 -2.1406 7 6 4.3869 2.3781 -3.5035 8 6 4.5449 3.6462 -4.0316 9 6 4.5458 4.7480 -3.1987 10 6 4.3873 4.5810 -1.8287 11 7 4.3872 5.6935 -0.9834 12 6 3.8673 6.8623 -1.4077 13 8 3.3074 6.9226 -2.4829 14 6 3.9800 8.0832 -0.5547 15 8 4.5401 8.0229 0.5201 16 7 3.4604 9.2521 -0.9793 17 6 3.5705 10.4495 -0.1424 18 1 3.4966 10.1669 0.9077 19 6 4.9194 11.1259 -0.3949 20 6 2.4572 11.4058 -0.4849 21 1 2.0009 11.3751 -1.4634 22 6 2.0212 12.3197 0.4509 23 7 1.1203 13.2193 0.1213 24 14 2.7101 12.2801 2.1867 25 1 1.9486 11.2975 2.9992 26 1 4.1404 11.8833 2.1427 27 1 2.5888 13.6278 2.7982 28 6 4.2345 3.3059 -1.3005 29 6 4.0395 2.8199 0.1176 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 3.3264 0.2935 -1.7718 38 1 4.9948 0.4614 -1.1518 39 1 4.3869 1.5186 -4.1574 40 1 4.6685 3.7752 -5.0966 41 1 4.6689 5.7381 -3.6120 42 1 4.7614 5.6246 -0.0911 43 1 3.0131 9.3003 -1.8386 44 1 4.9654 12.0631 0.1597 45 1 5.7232 10.4681 -0.0640 46 1 5.0308 11.3281 -1.4602 47 1 0.8138 13.8625 0.7795 48 1 3.3254 3.4552 0.6416 49 1 4.9935 2.8124 0.6447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122828103.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:44 Heat of formation + Delta-G solvation = -54.462664 kcal Electronic energy + Delta-G solvation = -29863.479103 eV Core-core repulsion = 25789.582123 eV Total energy + Delta-G solvation = -4073.896980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.36723 -41.36767 -39.90395 -38.24917 -37.12591 -36.01697 -34.82308 -34.43491 -31.86390 -31.42463 -31.25337 -28.60061 -27.39098 -27.33786 -26.31129 -23.86131 -23.37454 -22.44259 -22.09186 -21.56571 -21.07539 -20.25798 -18.74442 -18.31082 -17.64431 -17.21094 -17.17839 -17.08659 -16.62285 -16.38180 -16.08682 -15.66125 -15.46366 -15.18531 -15.06203 -14.74664 -14.57182 -14.39900 -14.27925 -14.12652 -13.81272 -13.43206 -13.33417 -13.18404 -13.14159 -13.03522 -12.84768 -12.81330 -12.49184 -12.38486 -12.32017 -12.27310 -11.85024 -11.83758 -11.58058 -11.49760 -11.33516 -10.88808 -10.72856 -10.13228 -9.86338 -9.58096 -9.26218 -8.40595 -6.49074 -0.13993 0.24127 0.54288 1.20325 1.33282 1.35851 1.45578 2.02933 2.26530 2.57251 2.66487 2.84937 2.97363 3.27749 3.36901 3.62537 3.93009 4.05696 4.08725 4.18864 4.23764 4.35861 4.36806 4.40818 4.51229 4.56192 4.62954 4.65361 4.66659 4.72145 4.78485 4.80476 4.88320 4.95106 4.97676 5.07769 5.16074 5.19742 5.20168 5.26144 5.37516 5.39226 5.39491 5.44012 5.46846 5.69290 5.78681 5.91104 5.93796 6.05508 6.43693 6.53759 6.66052 6.90666 7.18935 8.74467 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.002417 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.473643 B =11582.970342 C =12565.445032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C 0.039 3.961 4 N -0.500 5.500 5 C 0.078 3.922 6 C -0.110 4.110 7 C -0.108 4.108 8 C -0.098 4.098 9 C -0.139 4.139 10 C 0.148 3.852 11 N -0.635 5.635 12 C 0.516 3.484 13 O -0.517 6.517 14 C 0.499 3.501 15 O -0.551 6.551 16 N -0.668 5.668 17 C 0.237 3.763 18 H 0.041 0.959 19 C -0.147 4.147 20 C -0.537 4.537 21 H 0.052 0.948 22 C 0.032 3.968 23 N -0.930 5.930 24 Si 0.928 3.072 25 H -0.272 1.272 26 H -0.241 1.241 27 H -0.278 1.278 28 C -0.159 4.159 29 C 0.079 3.921 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.025 0.975 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.122 0.878 42 H 0.428 0.572 43 H 0.411 0.589 44 H 0.057 0.943 45 H 0.044 0.956 46 H 0.057 0.943 47 H 0.272 0.728 48 H 0.074 0.926 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.045 -29.186 -3.472 30.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.089 4.089 4 N -0.220 5.220 5 C -0.049 4.049 6 C -0.112 4.112 7 C -0.127 4.127 8 C -0.116 4.116 9 C -0.159 4.159 10 C 0.054 3.946 11 N -0.282 5.282 12 C 0.298 3.702 13 O -0.392 6.392 14 C 0.279 3.721 15 O -0.431 6.431 16 N -0.317 5.317 17 C 0.134 3.866 18 H 0.059 0.941 19 C -0.205 4.205 20 C -0.575 4.575 21 H 0.070 0.930 22 C -0.169 4.169 23 N -0.568 5.568 24 Si 0.751 3.249 25 H -0.198 1.198 26 H -0.165 1.165 27 H -0.203 1.203 28 C -0.162 4.162 29 C -0.049 4.049 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.044 0.956 37 H 0.117 0.883 38 H 0.131 0.869 39 H 0.172 0.828 40 H 0.170 0.830 41 H 0.140 0.860 42 H 0.267 0.733 43 H 0.247 0.753 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.071 -29.285 -2.900 30.266 hybrid contribution -0.504 1.534 -0.037 1.615 sum 6.568 -27.751 -2.937 28.669 Atomic orbital electron populations 1.21744 0.95186 1.02413 1.01674 1.21470 0.95752 0.94731 1.03045 1.22457 0.87213 0.98634 1.00612 1.65268 1.08681 1.17417 1.30621 1.21934 1.02735 0.93729 0.86544 1.21296 0.99498 0.96113 0.94281 1.20841 1.00203 0.97995 0.93622 1.21269 0.98252 0.91354 1.00768 1.21204 1.02145 1.00620 0.91930 1.17343 1.02111 0.84674 0.90445 1.43071 1.58142 1.07986 1.19020 1.20256 0.78770 0.84737 0.86393 1.90761 1.40681 1.85116 1.22668 1.20045 0.80714 0.84832 0.86479 1.90706 1.44008 1.85642 1.22700 1.46232 1.53923 1.08338 1.23228 1.19066 0.94670 0.81635 0.91252 0.94070 1.22214 0.96382 1.00103 1.01822 1.21141 1.18548 1.16881 1.00931 0.92962 1.25629 0.94504 0.94237 1.02501 1.69989 1.31612 1.18522 1.36678 0.86063 0.81011 0.77929 0.79899 1.19758 1.16456 1.20289 1.21016 1.04418 0.91925 0.98869 1.21750 1.02168 0.89392 0.91574 0.92826 0.93248 0.91369 0.91180 0.90860 0.90882 0.95649 0.88329 0.86868 0.82789 0.83016 0.86030 0.73266 0.75283 0.92382 0.93652 0.92375 0.91877 0.90730 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.11 -1.35 5.97 30.60 0.18 -1.16 16 3 C 0.04 0.62 4.64 86.31 0.40 1.02 16 4 N -0.50 -7.91 5.50 -897.11 -4.93 -12.84 16 5 C 0.08 1.02 6.41 85.49 0.55 1.57 16 6 C -0.11 -1.90 6.12 -19.69 -0.12 -2.02 16 7 C -0.11 -1.69 10.04 22.28 0.22 -1.46 16 8 C -0.10 -1.83 10.04 22.25 0.22 -1.60 16 9 C -0.14 -3.45 8.65 22.40 0.19 -3.26 16 10 C 0.15 3.70 6.26 38.20 0.24 3.94 16 11 N -0.64 -16.98 5.29 -304.89 -1.61 -18.59 16 12 C 0.52 16.89 7.61 87.24 0.66 17.55 16 13 O -0.52 -18.54 14.22 -3.33 -0.05 -18.58 16 14 C 0.50 18.74 7.85 87.24 0.68 19.42 16 15 O -0.55 -22.12 16.15 -3.26 -0.05 -22.18 16 16 N -0.67 -27.27 5.06 -447.52 -2.27 -29.53 16 17 C 0.24 10.92 2.12 44.25 0.09 11.02 16 18 H 0.04 2.00 5.34 -2.39 -0.01 1.99 16 19 C -0.15 -6.06 9.10 71.98 0.66 -5.40 16 20 C -0.54 -28.98 9.06 25.60 0.23 -28.75 16 21 H 0.05 3.06 8.02 -2.91 -0.02 3.04 16 22 C 0.03 1.77 5.47 84.66 0.46 2.23 16 23 N -0.93 -55.20 13.96 21.45 0.30 -54.90 16 24 Si 0.93 42.57 26.20 68.60 1.80 44.37 16 25 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 26 H -0.24 -10.37 6.15 99.48 0.61 -9.76 16 27 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 28 C -0.16 -3.30 6.14 -19.55 -0.12 -3.42 16 29 C 0.08 1.41 6.61 85.49 0.57 1.97 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.73 6.53 -2.39 -0.02 0.71 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 1.22 7.97 -2.39 -0.02 1.20 16 36 H 0.03 0.48 8.00 -2.39 -0.02 0.46 16 37 H 0.10 1.03 6.17 -2.38 -0.01 1.01 16 38 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 40 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.12 3.38 6.48 -2.91 -0.02 3.37 16 42 H 0.43 10.11 8.30 -92.71 -0.77 9.34 16 43 H 0.41 16.22 8.03 -92.71 -0.74 15.48 16 44 H 0.06 2.41 6.74 -2.39 -0.02 2.39 16 45 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 47 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 48 H 0.07 1.42 7.69 -2.39 -0.02 1.40 16 49 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -65.50 397.56 -1.59 -67.09 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: -0.62 Total: 34.55 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 5.84 Total: 10.61 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -8.51 Total: -115.87 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -0.10 Total: -40.76 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.80 Total: 44.37 kcal Total: -65.50 -1.59 -67.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122828103.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.632 kcal (2) G-P(sol) polarization free energy of solvation -65.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds