Wall clock time and date at job start Wed Apr 1 2020 02:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47254 * 2 1 4 4 H 1.09003 * 109.46760 * 54.31840 * 3 2 1 5 5 C 1.50704 * 109.46905 * 174.31442 * 3 2 1 6 6 H 1.07991 * 119.99890 * 91.74992 * 5 3 2 7 7 C 1.37876 * 119.99975 * 271.74491 * 5 3 2 8 8 N 1.31512 * 120.00256 * 183.12451 * 7 5 3 9 9 Si 1.86802 * 120.00108 * 3.12633 * 7 5 3 10 10 H 1.48499 * 109.47142 * 264.97531 * 9 7 5 11 11 H 1.48501 * 109.47114 * 24.97243 * 9 7 5 12 12 H 1.48496 * 109.47441 * 144.97416 * 9 7 5 13 13 N 1.46494 * 109.47496 * 294.31644 * 3 2 1 14 14 C 1.34782 * 120.00105 * 84.99801 * 13 3 2 15 15 O 1.21358 * 119.99876 * 0.02562 * 14 13 3 16 16 C 1.49323 * 119.99908 * 180.02562 * 14 13 3 17 17 O 1.21394 * 120.00410 * 0.02562 * 16 14 13 18 18 N 1.34773 * 119.99744 * 180.02562 * 16 14 13 19 19 C 1.39896 * 120.00026 * 184.36327 * 18 16 14 20 20 C 1.38749 * 120.10473 * 329.92326 * 19 18 16 21 21 C 1.38192 * 119.99815 * 179.74520 * 20 19 18 22 22 C 1.38322 * 120.20814 * 0.55747 * 21 20 19 23 23 C 1.38206 * 120.21153 * 359.70050 * 22 21 20 24 24 C 1.38724 * 119.99921 * 0.02562 * 23 22 21 25 25 N 1.39832 * 120.10378 * 180.02562 * 24 23 22 26 26 C 1.48533 * 111.00211 * 3.79647 * 25 24 23 27 27 C 1.54941 * 103.22829 * 159.71989 * 26 25 24 28 28 C 1.54592 * 102.92078 * 322.58738 * 27 26 25 29 29 C 1.47900 * 111.00457 * 121.19807 * 25 24 23 30 30 H 1.08994 * 109.47266 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46828 * 299.99853 * 1 2 3 32 32 H 1.09003 * 109.47644 * 59.99080 * 1 2 3 33 33 H 1.09010 * 109.46630 * 240.00874 * 2 1 3 34 34 H 1.08995 * 109.47351 * 120.00927 * 2 1 3 35 35 H 0.96999 * 120.00566 * 179.97438 * 8 7 5 36 36 H 0.96997 * 119.99881 * 264.99923 * 13 3 2 37 37 H 0.97005 * 120.00189 * 4.36168 * 18 16 14 38 38 H 1.08004 * 119.99921 * 0.02562 * 20 19 18 39 39 H 1.07994 * 119.89476 * 180.29855 * 21 20 19 40 40 H 1.07994 * 119.88869 * 179.71605 * 22 21 20 41 41 H 1.07998 * 120.00017 * 180.02562 * 23 22 21 42 42 H 1.08994 * 110.67095 * 278.15888 * 26 25 24 43 43 H 1.09001 * 110.66166 * 41.29046 * 26 25 24 44 44 H 1.08999 * 110.72144 * 204.22785 * 27 26 25 45 45 H 1.08999 * 110.71983 * 80.94594 * 27 26 25 46 46 H 1.08998 * 110.31272 * 263.04066 * 28 27 26 47 47 H 1.09003 * 110.30356 * 140.86813 * 28 27 26 48 48 H 1.09003 * 109.91326 * 333.50656 * 29 25 24 49 49 H 1.09000 * 109.91956 * 94.79759 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9848 0.8348 5 6 3.5405 1.4447 0.1408 6 1 4.1654 1.4432 -0.7400 7 6 4.1153 1.4488 1.3940 8 7 5.4231 1.5129 1.5174 9 14 3.0366 1.3634 2.9167 10 1 2.7798 2.7370 3.4191 11 1 1.7466 0.7126 2.5735 12 1 3.7257 0.5726 3.9678 13 7 1.6667 2.0925 -1.2586 14 6 0.4507 2.6590 -1.3897 15 8 -0.3347 2.6310 -0.4650 16 6 0.0700 3.3211 -2.6728 17 8 0.8554 3.3488 -3.5981 18 7 -1.1457 3.8880 -2.8037 19 6 -1.5372 4.4275 -4.0337 20 6 -0.5870 4.9547 -4.8965 21 6 -0.9755 5.4823 -6.1132 22 6 -2.3118 5.4975 -6.4703 23 6 -3.2661 4.9795 -5.6153 24 6 -2.8851 4.4426 -4.3942 25 7 -3.8488 3.9175 -3.5276 26 6 -5.1981 3.9529 -4.1477 27 6 -5.9916 2.9030 -3.3300 28 6 -4.9418 1.7969 -3.0763 29 6 -3.5775 2.4937 -3.2333 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 1.8933 -0.5138 -0.8902 34 1 1.8934 -0.5139 0.8898 35 1 5.8275 1.5161 2.3991 36 1 2.2945 2.1153 -1.9976 37 1 -1.7493 3.9219 -2.0451 38 1 0.4568 4.9485 -4.6190 39 1 -0.2340 5.8878 -6.7855 40 1 -2.6101 5.9152 -7.4204 41 1 -4.3084 4.9928 -5.8977 42 1 -5.6447 4.9414 -4.0409 43 1 -5.1466 3.6641 -5.1975 44 1 -6.8286 2.5146 -3.9103 45 1 -6.3383 3.3291 -2.3886 46 1 -5.0465 0.9999 -3.8124 47 1 -5.0489 1.3980 -2.0676 48 1 -3.0233 2.0434 -4.0569 49 1 -3.0079 2.4077 -2.3080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128314497.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:07 Heat of formation + Delta-G solvation = -24.564974 kcal Electronic energy + Delta-G solvation = -31017.589448 eV Core-core repulsion = 26944.988930 eV Total energy + Delta-G solvation = -4072.600519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.27263 -40.01714 -38.58226 -37.60261 -35.66163 -34.79071 -32.85585 -32.41293 -31.54799 -30.26933 -29.21173 -28.44573 -27.75713 -24.93404 -23.64098 -22.89687 -22.23301 -21.16826 -20.87803 -20.22436 -19.68859 -18.63858 -17.75223 -17.02765 -16.81679 -16.35495 -15.91533 -15.80310 -15.36483 -15.12980 -14.89089 -14.47932 -14.20525 -14.07584 -13.79835 -13.61908 -13.40294 -13.18439 -12.89425 -12.62275 -12.45243 -12.25012 -12.03424 -11.97101 -11.92207 -11.76654 -11.64783 -11.43897 -11.13497 -11.00387 -10.86675 -10.80961 -10.77666 -10.46521 -10.04831 -9.84233 -9.81816 -9.29197 -9.15454 -8.81995 -8.58092 -8.25013 -7.87432 -6.28171 -4.32632 1.01919 1.23183 1.84683 2.61093 3.20998 3.30529 3.35830 3.38792 3.56272 3.79595 4.01379 4.24194 4.27043 4.31330 4.64917 4.69192 4.86097 4.90650 4.92731 5.04922 5.12796 5.16218 5.25654 5.32015 5.41627 5.45673 5.46939 5.63946 5.66720 5.72063 5.82033 5.94040 5.95303 5.97063 6.09100 6.11241 6.29490 6.44296 6.50959 6.54801 6.63820 6.65882 6.78159 6.85467 6.99040 7.09733 7.19448 7.23521 7.37239 7.76181 8.03231 8.38609 8.54913 8.74712 9.31521 10.83319 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.003009 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.887604 B = 9302.875534 C =10641.158261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C 0.238 3.762 4 H 0.054 0.946 5 C -0.536 4.536 6 H 0.082 0.918 7 C 0.083 3.917 8 N -0.885 5.885 9 Si 0.868 3.132 10 H -0.275 1.275 11 H -0.252 1.252 12 H -0.283 1.283 13 N -0.661 5.661 14 C 0.495 3.505 15 O -0.532 6.532 16 C 0.504 3.496 17 O -0.504 6.504 18 N -0.642 5.642 19 C 0.133 3.867 20 C -0.106 4.106 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.151 4.151 24 C 0.074 3.926 25 N -0.471 5.471 26 C 0.032 3.968 27 C -0.124 4.124 28 C -0.131 4.131 29 C 0.035 3.965 30 H 0.033 0.967 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.269 0.731 36 H 0.406 0.594 37 H 0.425 0.575 38 H 0.150 0.850 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.131 0.869 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.053 0.947 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.450 4.509 -13.588 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C 0.136 3.864 4 H 0.072 0.928 5 C -0.574 4.574 6 H 0.100 0.900 7 C -0.122 4.122 8 N -0.521 5.521 9 Si 0.694 3.306 10 H -0.200 1.200 11 H -0.176 1.176 12 H -0.209 1.209 13 N -0.310 5.310 14 C 0.274 3.726 15 O -0.411 6.411 16 C 0.287 3.713 17 O -0.378 6.378 18 N -0.289 5.289 19 C 0.037 3.963 20 C -0.127 4.127 21 C -0.142 4.142 22 C -0.133 4.133 23 C -0.172 4.172 24 C -0.026 4.026 25 N -0.188 5.188 26 C -0.094 4.094 27 C -0.162 4.162 28 C -0.169 4.169 29 C -0.091 4.091 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.242 0.758 37 H 0.265 0.735 38 H 0.168 0.832 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.148 0.852 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.071 0.929 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.219 4.701 -12.835 25.240 hybrid contribution -0.335 -0.339 0.198 0.516 sum -21.553 4.362 -12.636 25.362 Atomic orbital electron populations 1.21912 0.97418 0.99156 1.01801 1.22176 0.93739 0.99221 1.01723 1.19310 0.96106 0.89141 0.81826 0.92811 1.20975 0.88260 1.53251 0.94870 0.90042 1.24883 0.94944 0.93499 0.98883 1.69879 1.09650 1.48227 1.24342 0.86994 0.81689 0.79083 0.82802 1.20026 1.17583 1.20920 1.46435 1.13279 1.52518 1.18769 1.19689 0.84442 0.81373 0.87141 1.90736 1.50591 1.59526 1.40259 1.20927 0.81888 0.78959 0.89524 1.90703 1.49599 1.56764 1.40733 1.43285 1.17573 1.55847 1.12234 1.17460 0.91534 0.99656 0.87679 1.21457 1.00749 0.96418 0.94059 1.21037 0.95985 1.00593 0.96632 1.20996 0.92952 0.99972 0.99421 1.21071 1.00238 1.03375 0.92532 1.18798 0.90217 1.02038 0.91518 1.61906 1.01780 1.16868 1.38221 1.23426 0.88064 1.00701 0.97236 1.22506 0.97480 0.95478 1.00750 1.22421 0.93606 0.97955 1.02944 1.23034 0.98016 0.85727 1.02285 0.94793 0.92869 0.93550 0.92646 0.91560 0.92143 0.75801 0.73545 0.83214 0.85675 0.86002 0.85179 0.89351 0.92179 0.90646 0.90384 0.91169 0.90346 0.92869 0.89349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.53 37.16 0.32 -2.40 16 2 C -0.13 -2.69 5.11 -26.73 -0.14 -2.83 16 3 C 0.24 5.43 1.77 -69.08 -0.12 5.30 16 4 H 0.05 1.32 5.38 -51.93 -0.28 1.04 16 5 C -0.54 -14.10 9.06 -34.44 -0.31 -14.41 16 6 H 0.08 2.29 8.04 -52.49 -0.42 1.87 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -25.72 13.96 55.43 0.77 -24.95 16 9 Si 0.87 20.59 26.25 -169.99 -4.46 16.12 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.25 -5.70 5.80 56.52 0.33 -5.38 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 N -0.66 -13.31 5.02 -55.41 -0.28 -13.58 16 14 C 0.49 9.24 6.48 -11.64 -0.08 9.17 16 15 O -0.53 -10.57 13.62 5.49 0.07 -10.50 16 16 C 0.50 8.34 7.75 -11.65 -0.09 8.25 16 17 O -0.50 -8.91 13.62 5.46 0.07 -8.84 16 18 N -0.64 -9.15 4.10 -10.16 -0.04 -9.19 16 19 C 0.13 1.80 6.15 -83.50 -0.51 1.28 16 20 C -0.11 -1.42 8.74 -39.41 -0.34 -1.77 16 21 C -0.12 -1.34 10.04 -39.57 -0.40 -1.74 16 22 C -0.11 -1.09 10.04 -39.56 -0.40 -1.48 16 23 C -0.15 -1.49 8.83 -39.41 -0.35 -1.84 16 24 C 0.07 0.86 5.39 -83.54 -0.45 0.41 16 25 N -0.47 -4.94 5.00 -166.97 -0.83 -5.78 16 26 C 0.03 0.25 5.31 -1.90 -0.01 0.24 16 27 C -0.12 -0.85 7.06 -24.87 -0.18 -1.02 16 28 C -0.13 -1.06 6.93 -25.38 -0.18 -1.24 16 29 C 0.03 0.37 5.37 -2.76 -0.01 0.35 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 1.04 7.89 -51.93 -0.41 0.63 16 32 H 0.05 0.85 5.63 -51.93 -0.29 0.56 16 33 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 34 H 0.07 1.42 6.54 -51.93 -0.34 1.08 16 35 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.41 7.86 8.05 -40.82 -0.33 7.53 16 37 H 0.43 5.84 6.69 -40.82 -0.27 5.57 16 38 H 0.15 2.22 5.84 -52.48 -0.31 1.91 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.13 0.99 5.79 -52.49 -0.30 0.68 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.43 6.35 -51.93 -0.33 0.10 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.61 7.74 -51.93 -0.40 0.21 16 49 H 0.09 1.04 6.73 -51.93 -0.35 0.69 16 LS Contribution 381.71 15.07 5.75 5.75 Total: -1.00 -29.62 381.71 -9.34 -38.95 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -7.05 Total: 13.55 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -3.34 Total: -1.55 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.38 Total: -53.50 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.15 Total: -19.34 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.46 Total: 16.12 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.62 -9.34 -38.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128314497.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.388 kcal (2) G-P(sol) polarization free energy of solvation -29.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds