Wall clock time and date at job start Wed Apr 1 2020 02:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47254 * 2 1 4 4 H 1.09003 * 109.46760 * 54.31840 * 3 2 1 5 5 C 1.50704 * 109.46905 * 174.31442 * 3 2 1 6 6 H 1.07991 * 119.99890 * 91.74992 * 5 3 2 7 7 C 1.37876 * 119.99975 * 271.74491 * 5 3 2 8 8 N 1.31512 * 120.00256 * 183.12451 * 7 5 3 9 9 Si 1.86802 * 120.00108 * 3.12633 * 7 5 3 10 10 H 1.48499 * 109.47142 * 264.97531 * 9 7 5 11 11 H 1.48501 * 109.47114 * 24.97243 * 9 7 5 12 12 H 1.48496 * 109.47441 * 144.97416 * 9 7 5 13 13 N 1.46494 * 109.47496 * 294.31644 * 3 2 1 14 14 C 1.34782 * 120.00105 * 84.99801 * 13 3 2 15 15 O 1.21358 * 119.99876 * 0.02562 * 14 13 3 16 16 C 1.49323 * 119.99908 * 180.02562 * 14 13 3 17 17 O 1.21394 * 120.00410 * 0.02562 * 16 14 13 18 18 N 1.34773 * 119.99744 * 180.02562 * 16 14 13 19 19 C 1.39896 * 120.00026 * 184.36327 * 18 16 14 20 20 C 1.38749 * 120.10473 * 329.92326 * 19 18 16 21 21 C 1.38192 * 119.99815 * 179.74520 * 20 19 18 22 22 C 1.38322 * 120.20814 * 0.55747 * 21 20 19 23 23 C 1.38206 * 120.21153 * 359.70050 * 22 21 20 24 24 C 1.38724 * 119.99921 * 0.02562 * 23 22 21 25 25 N 1.39832 * 120.10378 * 180.02562 * 24 23 22 26 26 C 1.48533 * 111.00211 * 3.79647 * 25 24 23 27 27 C 1.54941 * 103.22829 * 159.71989 * 26 25 24 28 28 C 1.54592 * 102.92078 * 322.58738 * 27 26 25 29 29 C 1.47900 * 111.00457 * 121.19807 * 25 24 23 30 30 H 1.08994 * 109.47266 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46828 * 299.99853 * 1 2 3 32 32 H 1.09003 * 109.47644 * 59.99080 * 1 2 3 33 33 H 1.09010 * 109.46630 * 240.00874 * 2 1 3 34 34 H 1.08995 * 109.47351 * 120.00927 * 2 1 3 35 35 H 0.96999 * 120.00566 * 179.97438 * 8 7 5 36 36 H 0.96997 * 119.99881 * 264.99923 * 13 3 2 37 37 H 0.97005 * 120.00189 * 4.36168 * 18 16 14 38 38 H 1.08004 * 119.99921 * 0.02562 * 20 19 18 39 39 H 1.07994 * 119.89476 * 180.29855 * 21 20 19 40 40 H 1.07994 * 119.88869 * 179.71605 * 22 21 20 41 41 H 1.07998 * 120.00017 * 180.02562 * 23 22 21 42 42 H 1.08994 * 110.67095 * 278.15888 * 26 25 24 43 43 H 1.09001 * 110.66166 * 41.29046 * 26 25 24 44 44 H 1.08999 * 110.72144 * 204.22785 * 27 26 25 45 45 H 1.08999 * 110.71983 * 80.94594 * 27 26 25 46 46 H 1.08998 * 110.31272 * 263.04066 * 28 27 26 47 47 H 1.09003 * 110.30356 * 140.86813 * 28 27 26 48 48 H 1.09003 * 109.91326 * 333.50656 * 29 25 24 49 49 H 1.09000 * 109.91956 * 94.79759 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9848 0.8348 5 6 3.5405 1.4447 0.1408 6 1 4.1654 1.4432 -0.7400 7 6 4.1153 1.4488 1.3940 8 7 5.4231 1.5129 1.5174 9 14 3.0366 1.3634 2.9167 10 1 2.7798 2.7370 3.4191 11 1 1.7466 0.7126 2.5735 12 1 3.7257 0.5726 3.9678 13 7 1.6667 2.0925 -1.2586 14 6 0.4507 2.6590 -1.3897 15 8 -0.3347 2.6310 -0.4650 16 6 0.0700 3.3211 -2.6728 17 8 0.8554 3.3488 -3.5981 18 7 -1.1457 3.8880 -2.8037 19 6 -1.5372 4.4275 -4.0337 20 6 -0.5870 4.9547 -4.8965 21 6 -0.9755 5.4823 -6.1132 22 6 -2.3118 5.4975 -6.4703 23 6 -3.2661 4.9795 -5.6153 24 6 -2.8851 4.4426 -4.3942 25 7 -3.8488 3.9175 -3.5276 26 6 -5.1981 3.9529 -4.1477 27 6 -5.9916 2.9030 -3.3300 28 6 -4.9418 1.7969 -3.0763 29 6 -3.5775 2.4937 -3.2333 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 1.8933 -0.5138 -0.8902 34 1 1.8934 -0.5139 0.8898 35 1 5.8275 1.5161 2.3991 36 1 2.2945 2.1153 -1.9976 37 1 -1.7493 3.9219 -2.0451 38 1 0.4568 4.9485 -4.6190 39 1 -0.2340 5.8878 -6.7855 40 1 -2.6101 5.9152 -7.4204 41 1 -4.3084 4.9928 -5.8977 42 1 -5.6447 4.9414 -4.0409 43 1 -5.1466 3.6641 -5.1975 44 1 -6.8286 2.5146 -3.9103 45 1 -6.3383 3.3291 -2.3886 46 1 -5.0465 0.9999 -3.8124 47 1 -5.0489 1.3980 -2.0676 48 1 -3.0233 2.0434 -4.0569 49 1 -3.0079 2.4077 -2.3080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128314497.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:06 Heat of formation + Delta-G solvation = -44.262419 kcal Electronic energy + Delta-G solvation = -31018.443594 eV Core-core repulsion = 26944.988930 eV Total energy + Delta-G solvation = -4073.454664 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.37809 -41.18985 -39.88876 -38.51118 -37.29923 -36.02384 -34.42965 -33.59371 -33.18427 -31.19375 -29.93605 -29.62947 -29.22203 -26.34125 -24.68679 -24.34922 -23.30232 -22.05640 -21.86397 -21.43810 -21.23163 -20.03347 -18.88054 -18.53126 -18.01798 -17.43345 -17.23878 -17.01501 -16.90906 -16.19139 -16.00001 -15.77807 -15.31675 -15.27313 -15.09416 -14.82504 -14.59476 -14.34730 -14.00937 -13.92071 -13.76246 -13.72130 -13.32546 -13.09000 -13.05187 -12.90774 -12.65930 -12.55569 -12.48712 -12.34336 -12.17957 -12.03731 -11.85533 -11.61633 -11.49694 -11.43746 -11.25917 -10.90409 -10.63577 -10.58343 -9.95787 -9.48734 -8.76732 -8.39899 -6.48061 -0.06423 0.36659 0.62308 1.25358 1.34604 1.36526 1.47302 2.09753 2.27554 2.57848 2.67761 2.95317 3.00194 3.42874 3.58109 3.67630 3.90838 4.00546 4.15676 4.25863 4.27266 4.29906 4.36661 4.40466 4.45352 4.48123 4.58139 4.62017 4.75619 4.81034 4.82390 4.88333 4.93777 5.06024 5.07565 5.13831 5.14147 5.19788 5.21638 5.29384 5.32718 5.38662 5.48914 5.56647 5.58847 5.75254 5.79319 5.88837 6.09214 6.22676 6.49103 6.56796 6.71697 6.97072 7.20609 8.75195 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.003009 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.887604 B = 9302.875534 C =10641.158261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.245 3.755 4 H 0.041 0.959 5 C -0.536 4.536 6 H 0.051 0.949 7 C 0.031 3.969 8 N -0.931 5.931 9 Si 0.925 3.075 10 H -0.276 1.276 11 H -0.235 1.235 12 H -0.277 1.277 13 N -0.668 5.668 14 C 0.499 3.501 15 O -0.541 6.541 16 C 0.509 3.491 17 O -0.520 6.520 18 N -0.627 5.627 19 C 0.101 3.899 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.102 4.102 23 C -0.149 4.149 24 C 0.073 3.927 25 N -0.482 5.482 26 C 0.029 3.971 27 C -0.118 4.118 28 C -0.129 4.129 29 C 0.036 3.964 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.271 0.729 36 H 0.409 0.591 37 H 0.426 0.574 38 H 0.127 0.873 39 H 0.143 0.857 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.038 0.962 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.279 4.763 -14.899 29.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.142 3.858 4 H 0.059 0.941 5 C -0.574 4.574 6 H 0.069 0.931 7 C -0.169 4.169 8 N -0.569 5.569 9 Si 0.749 3.251 10 H -0.202 1.202 11 H -0.157 1.157 12 H -0.202 1.202 13 N -0.317 5.317 14 C 0.279 3.721 15 O -0.421 6.421 16 C 0.292 3.708 17 O -0.396 6.396 18 N -0.273 5.273 19 C 0.005 3.995 20 C -0.146 4.146 21 C -0.148 4.148 22 C -0.121 4.121 23 C -0.170 4.170 24 C -0.027 4.027 25 N -0.199 5.199 26 C -0.096 4.096 27 C -0.156 4.156 28 C -0.167 4.167 29 C -0.090 4.090 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.245 0.755 37 H 0.266 0.734 38 H 0.145 0.855 39 H 0.161 0.839 40 H 0.175 0.825 41 H 0.177 0.823 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.116 0.884 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.056 0.944 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.101 4.967 -14.171 29.250 hybrid contribution 0.800 -0.338 0.455 0.981 sum -24.301 4.629 -13.716 28.286 Atomic orbital electron populations 1.21797 0.95414 1.00821 1.01279 1.22089 0.95445 0.97404 1.01766 1.19077 0.93659 0.90576 0.82512 0.94092 1.21174 0.90096 1.52253 0.93856 0.93104 1.25652 0.95982 0.93367 1.01933 1.69996 1.11458 1.50296 1.25194 0.86086 0.80744 0.79072 0.79236 1.20218 1.15749 1.20221 1.46216 1.14177 1.53271 1.18058 1.19945 0.83620 0.80691 0.87865 1.90720 1.50727 1.59684 1.40927 1.20379 0.82728 0.79397 0.88338 1.90708 1.50265 1.57757 1.40854 1.43109 1.16413 1.54817 1.12957 1.17682 0.92765 1.01543 0.87464 1.21415 0.99799 0.97941 0.95487 1.21291 0.97464 1.00248 0.95846 1.21411 0.92007 0.98238 1.00428 1.21462 1.01857 1.02181 0.91512 1.18974 0.89552 1.01867 0.92297 1.61882 1.02829 1.16567 1.38586 1.23580 0.86493 1.01740 0.97823 1.22513 0.97500 0.94580 1.00964 1.22429 0.92553 0.98478 1.03285 1.22961 0.99149 0.86182 1.00671 0.92028 0.93739 0.93681 0.92135 0.92043 0.91953 0.75549 0.73389 0.85491 0.83915 0.82544 0.82298 0.88207 0.91046 0.88442 0.90502 0.90219 0.90399 0.94373 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 8.53 71.98 0.61 -4.24 16 2 C -0.13 -5.24 5.11 30.59 0.16 -5.08 16 3 C 0.24 11.27 1.77 44.25 0.08 11.35 16 4 H 0.04 2.00 5.38 -2.39 -0.01 1.99 16 5 C -0.54 -29.08 9.06 25.60 0.23 -28.85 16 6 H 0.05 3.00 8.04 -2.92 -0.02 2.98 16 7 C 0.03 1.74 5.47 84.65 0.46 2.20 16 8 N -0.93 -55.78 13.96 21.45 0.30 -55.48 16 9 Si 0.93 42.77 26.25 68.60 1.80 44.57 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.23 -10.08 5.80 99.48 0.58 -9.50 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 13 N -0.67 -27.53 5.02 -447.56 -2.25 -29.78 16 14 C 0.50 18.95 6.48 87.23 0.57 19.51 16 15 O -0.54 -21.54 13.62 -3.27 -0.04 -21.59 16 16 C 0.51 17.35 7.75 87.23 0.68 18.02 16 17 O -0.52 -19.12 13.62 -3.38 -0.05 -19.17 16 18 N -0.63 -18.21 4.10 -304.39 -1.25 -19.46 16 19 C 0.10 2.72 6.15 38.29 0.24 2.95 16 20 C -0.13 -3.39 8.74 22.38 0.20 -3.20 16 21 C -0.13 -2.61 10.04 22.28 0.22 -2.38 16 22 C -0.10 -1.60 10.04 22.28 0.22 -1.37 16 23 C -0.15 -2.46 8.83 22.38 0.20 -2.27 16 24 C 0.07 1.58 5.39 38.30 0.21 1.79 16 25 N -0.48 -9.31 5.00 -682.18 -3.41 -12.72 16 26 C 0.03 0.36 5.31 86.65 0.46 0.82 16 27 C -0.12 -1.25 7.06 31.80 0.22 -1.03 16 28 C -0.13 -1.85 6.93 31.47 0.22 -1.63 16 29 C 0.04 0.73 5.37 86.45 0.46 1.19 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.04 1.66 7.89 -2.38 -0.02 1.64 16 32 H 0.04 1.60 5.63 -2.39 -0.01 1.59 16 33 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 34 H 0.06 2.56 6.54 -2.39 -0.02 2.54 16 35 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.41 16.49 8.05 -92.71 -0.75 15.74 16 37 H 0.43 11.93 6.69 -92.70 -0.62 11.31 16 38 H 0.13 3.96 5.84 -2.91 -0.02 3.94 16 39 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.16 1.68 5.79 -2.91 -0.02 1.66 16 42 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 0.74 6.35 -2.39 -0.02 0.72 16 44 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.04 0.87 7.74 -2.39 -0.02 0.85 16 49 H 0.07 1.63 6.73 -2.39 -0.02 1.61 16 Total: -1.00 -65.82 381.71 0.04 -65.78 By element: Atomic # 1 Polarization: 40.52 SS G_CDS: -0.50 Total: 40.03 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 5.44 Total: 7.81 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -6.61 Total: -117.44 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -0.09 Total: -40.76 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.80 Total: 44.57 kcal Total: -65.82 0.04 -65.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128314497.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.521 kcal (2) G-P(sol) polarization free energy of solvation -65.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds