Wall clock time and date at job start Wed Apr 1 2020 02:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46890 * 2 1 4 4 H 1.08998 * 109.47480 * 305.00091 * 3 2 1 5 5 C 1.50699 * 109.46895 * 184.99912 * 3 2 1 6 6 H 1.08000 * 120.00265 * 240.00103 * 5 3 2 7 7 C 1.37880 * 119.99958 * 60.00494 * 5 3 2 8 8 N 1.31522 * 119.99970 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00168 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47338 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47306 * 120.00033 * 9 7 5 12 12 H 1.48504 * 109.47057 * 239.99981 * 9 7 5 13 13 N 1.46500 * 109.46940 * 65.00532 * 3 2 1 14 14 C 1.34783 * 119.99915 * 274.99396 * 13 3 2 15 15 O 1.21364 * 119.99850 * 359.97438 * 14 13 3 16 16 C 1.49325 * 119.99932 * 180.02562 * 14 13 3 17 17 O 1.21388 * 120.00098 * 359.97438 * 16 14 13 18 18 N 1.34771 * 119.99578 * 179.97438 * 16 14 13 19 19 C 1.39897 * 119.99508 * 174.44175 * 18 16 14 20 20 C 1.38745 * 120.10825 * 335.07229 * 19 18 16 21 21 C 1.38196 * 119.99728 * 179.74392 * 20 19 18 22 22 C 1.38317 * 120.21182 * 0.55663 * 21 20 19 23 23 C 1.38210 * 120.21002 * 359.70126 * 22 21 20 24 24 C 1.38732 * 119.99798 * 0.02562 * 23 22 21 25 25 N 1.39834 * 120.10294 * 180.02562 * 24 23 22 26 26 C 1.48532 * 111.00150 * 7.36538 * 25 24 23 27 27 C 1.54933 * 103.22815 * 159.72059 * 26 25 24 28 28 C 1.54595 * 102.92195 * 322.58300 * 27 26 25 29 29 C 1.47897 * 110.99824 * 124.75919 * 25 24 23 30 30 H 1.08995 * 109.47372 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46958 * 299.99995 * 1 2 3 32 32 H 1.09004 * 109.47495 * 59.99399 * 1 2 3 33 33 H 1.09003 * 109.46682 * 240.00457 * 2 1 3 34 34 H 1.08995 * 109.46928 * 120.00562 * 2 1 3 35 35 H 0.96992 * 119.99913 * 180.02562 * 8 7 5 36 36 H 0.97002 * 120.00556 * 94.99702 * 13 3 2 37 37 H 0.96998 * 120.00459 * 354.44357 * 18 16 14 38 38 H 1.07997 * 120.00031 * 0.02562 * 20 19 18 39 39 H 1.08001 * 119.89373 * 180.29973 * 21 20 19 40 40 H 1.07995 * 119.89645 * 179.72100 * 22 21 20 41 41 H 1.07997 * 120.00240 * 180.02562 * 23 22 21 42 42 H 1.09007 * 110.66482 * 278.15347 * 26 25 24 43 43 H 1.08997 * 110.66728 * 41.27891 * 26 25 24 44 44 H 1.09007 * 110.72142 * 204.22696 * 27 26 25 45 45 H 1.08997 * 110.72979 * 80.94565 * 27 26 25 46 46 H 1.09004 * 110.31001 * 263.04568 * 28 27 26 47 47 H 1.09000 * 110.30786 * 140.87867 * 28 27 26 48 48 H 1.09000 * 109.92071 * 333.51047 * 29 25 24 49 49 H 1.08999 * 109.92143 * 94.80622 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3367 -2.1730 9 14 6.0049 0.8800 -1.3812 10 1 6.5988 1.5451 -0.1937 11 1 6.4961 -0.5190 -1.4629 12 1 6.3999 1.6158 -2.6092 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3398 2.6327 0.4336 16 6 0.0403 3.3323 2.6429 17 8 0.8156 3.3644 3.5764 18 7 -1.1767 3.8997 2.7579 19 6 -1.5913 4.4225 3.9875 20 6 -1.0464 3.9394 5.1684 21 6 -1.4538 4.4612 6.3815 22 6 -2.4128 5.4570 6.4241 23 6 -2.9653 5.9408 5.2532 24 6 -2.5587 5.4273 4.0303 25 7 -3.1158 5.9156 2.8444 26 6 -3.9838 7.0916 3.1086 27 6 -4.0666 7.7886 1.7275 28 6 -2.6426 7.5963 1.1572 29 6 -2.0631 6.3909 1.9207 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.8292 -0.0617 -2.9495 36 1 2.2719 2.1230 1.9979 37 1 -1.7652 3.9455 1.9881 38 1 -0.3006 3.1589 5.1395 39 1 -1.0249 4.0873 7.2996 40 1 -2.7307 5.8579 7.3751 41 1 -3.7136 6.7187 5.2903 42 1 -4.9727 6.7733 3.4389 43 1 -3.5247 7.7507 3.8454 44 1 -4.2959 8.8480 1.8432 45 1 -4.8056 7.3002 1.0925 46 1 -2.0387 8.4853 1.3395 47 1 -2.6884 7.3815 0.0896 48 1 -1.1834 6.6978 2.4864 49 1 -1.7992 5.5993 1.2193 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128314739.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:10 Heat of formation + Delta-G solvation = -24.830089 kcal Electronic energy + Delta-G solvation = -30817.011135 eV Core-core repulsion = 26744.399121 eV Total energy + Delta-G solvation = -4072.612015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26498 -39.93678 -38.46387 -37.55767 -35.53149 -34.74364 -32.83578 -32.41807 -31.01198 -30.21843 -29.20180 -28.41529 -27.27317 -24.85782 -23.60769 -23.06646 -22.14151 -21.21114 -20.81155 -20.11607 -19.47838 -18.53776 -17.72512 -16.97724 -16.50555 -16.26205 -15.88204 -15.58168 -15.31700 -15.01046 -14.72969 -14.42420 -14.22771 -14.10995 -13.82378 -13.42559 -13.33451 -13.17103 -12.76444 -12.57567 -12.31597 -12.08090 -12.00213 -11.73872 -11.61492 -11.60103 -11.40417 -11.33651 -11.09314 -10.94651 -10.86212 -10.85102 -10.49918 -10.34115 -10.28251 -9.84827 -9.71234 -9.14794 -9.05422 -8.58802 -8.52362 -8.05757 -7.79698 -6.19223 -4.28865 1.04862 1.25620 1.94093 2.68070 3.21461 3.29832 3.33466 3.41907 3.64539 3.85405 4.07824 4.26496 4.32148 4.32961 4.67810 4.71930 4.91321 4.93640 5.03860 5.09962 5.13280 5.18286 5.27062 5.33933 5.43770 5.48135 5.49561 5.66136 5.69567 5.73336 5.84310 5.96228 6.11061 6.30713 6.32370 6.35697 6.46688 6.54447 6.57651 6.65660 6.93330 6.98619 7.08423 7.13727 7.22127 7.26135 7.48847 7.61974 7.76441 7.90638 8.06586 8.42269 8.60281 8.84326 9.38054 10.86184 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.002704 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.297568 B =10353.855327 C =11097.152669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.536 4.536 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.667 5.667 14 C 0.494 3.506 15 O -0.528 6.528 16 C 0.503 3.497 17 O -0.506 6.506 18 N -0.643 5.643 19 C 0.136 3.864 20 C -0.110 4.110 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.148 4.148 24 C 0.072 3.928 25 N -0.471 5.471 26 C 0.033 3.967 27 C -0.124 4.124 28 C -0.131 4.131 29 C 0.033 3.967 30 H 0.026 0.974 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.035 0.965 35 H 0.265 0.735 36 H 0.402 0.598 37 H 0.425 0.575 38 H 0.149 0.851 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.055 0.945 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.233 12.924 12.496 22.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.316 5.316 14 C 0.272 3.728 15 O -0.407 6.407 16 C 0.286 3.714 17 O -0.380 6.380 18 N -0.290 5.290 19 C 0.039 3.961 20 C -0.131 4.131 21 C -0.141 4.141 22 C -0.136 4.136 23 C -0.169 4.169 24 C -0.028 4.028 25 N -0.187 5.187 26 C -0.093 4.093 27 C -0.162 4.162 28 C -0.169 4.169 29 C -0.093 4.093 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.236 0.764 37 H 0.265 0.735 38 H 0.166 0.834 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.148 0.852 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.089 0.911 47 H 0.097 0.903 48 H 0.073 0.927 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.447 12.341 11.901 22.420 hybrid contribution 1.349 0.468 0.248 1.450 sum -13.098 12.810 12.149 21.983 Atomic orbital electron populations 1.21856 0.98277 0.98451 1.01045 1.21964 0.92657 0.99379 1.02778 1.19022 0.94793 0.89405 0.80076 0.92734 1.21244 0.90309 1.39360 1.06551 0.91720 1.24875 0.98832 0.94603 0.95248 1.69893 1.35179 1.37446 1.09355 0.86359 0.84539 0.77852 0.78195 1.19621 1.20791 1.20835 1.46464 1.13320 1.52566 1.19215 1.19586 0.84538 0.81597 0.87053 1.90750 1.51074 1.59534 1.39317 1.21043 0.81471 0.78995 0.89850 1.90688 1.50655 1.56384 1.40285 1.43430 1.17256 1.56415 1.11946 1.17477 0.97617 0.95298 0.85733 1.21372 1.00822 1.00599 0.90270 1.21005 0.97927 0.97737 0.97454 1.20975 0.97212 0.97733 0.97679 1.21016 1.03120 1.01536 0.91206 1.18778 0.97134 0.96300 0.90604 1.61906 1.16953 1.29643 1.10195 1.23415 0.97886 0.90365 0.97647 1.22511 0.97377 1.00509 0.95830 1.22426 0.96202 0.97477 1.00837 1.23077 0.93050 0.97736 0.95428 0.95455 0.94628 0.92934 0.87835 0.94657 0.92489 0.76405 0.73467 0.83388 0.85728 0.86016 0.85239 0.89340 0.92209 0.90623 0.90350 0.91111 0.90264 0.92670 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.52 37.16 0.32 -2.67 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.54 2.24 -69.09 -0.15 6.39 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -23.98 11.29 55.43 0.63 -23.36 16 9 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.67 -13.97 5.01 -55.41 -0.28 -14.25 16 14 C 0.49 9.69 6.45 -11.64 -0.08 9.61 16 15 O -0.53 -11.21 13.62 5.48 0.07 -11.13 16 16 C 0.50 8.62 7.69 -11.65 -0.09 8.53 16 17 O -0.51 -9.13 13.65 5.46 0.07 -9.05 16 18 N -0.64 -9.53 4.23 -10.16 -0.04 -9.58 16 19 C 0.14 1.89 6.14 -83.50 -0.51 1.38 16 20 C -0.11 -1.51 8.72 -39.41 -0.34 -1.85 16 21 C -0.12 -1.35 10.04 -39.57 -0.40 -1.75 16 22 C -0.12 -1.14 10.04 -39.56 -0.40 -1.53 16 23 C -0.15 -1.50 8.81 -39.41 -0.35 -1.85 16 24 C 0.07 0.86 5.45 -83.54 -0.46 0.41 16 25 N -0.47 -5.12 5.05 -166.97 -0.84 -5.96 16 26 C 0.03 0.27 5.19 -1.90 -0.01 0.26 16 27 C -0.12 -0.89 7.06 -24.87 -0.18 -1.06 16 28 C -0.13 -1.11 6.93 -25.37 -0.18 -1.29 16 29 C 0.03 0.36 5.21 -2.76 -0.01 0.34 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.03 0.74 5.65 -51.93 -0.29 0.45 16 32 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 33 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.40 7.92 8.01 -40.82 -0.33 7.59 16 37 H 0.43 6.12 6.07 -40.82 -0.25 5.87 16 38 H 0.15 2.22 5.79 -52.49 -0.30 1.92 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 41 H 0.13 1.02 5.92 -52.49 -0.31 0.71 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 44 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.05 0.66 7.69 -51.93 -0.40 0.26 16 49 H 0.09 1.06 6.41 -51.93 -0.33 0.72 16 LS Contribution 384.28 15.07 5.79 5.79 Total: -1.00 -28.57 384.28 -10.00 -38.57 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -7.01 Total: 14.43 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -3.37 Total: -0.79 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.54 Total: -53.15 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.15 Total: -20.19 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.57 -10.00 -38.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128314739.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.742 kcal (2) G-P(sol) polarization free energy of solvation -28.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds