Wall clock time and date at job start Wed Apr 1 2020 02:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46890 * 2 1 4 4 H 1.08998 * 109.47480 * 305.00091 * 3 2 1 5 5 C 1.50699 * 109.46895 * 184.99912 * 3 2 1 6 6 H 1.08000 * 120.00265 * 240.00103 * 5 3 2 7 7 C 1.37880 * 119.99958 * 60.00494 * 5 3 2 8 8 N 1.31522 * 119.99970 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00168 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47338 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47306 * 120.00033 * 9 7 5 12 12 H 1.48504 * 109.47057 * 239.99981 * 9 7 5 13 13 N 1.46500 * 109.46940 * 65.00532 * 3 2 1 14 14 C 1.34783 * 119.99915 * 274.99396 * 13 3 2 15 15 O 1.21364 * 119.99850 * 359.97438 * 14 13 3 16 16 C 1.49325 * 119.99932 * 180.02562 * 14 13 3 17 17 O 1.21388 * 120.00098 * 359.97438 * 16 14 13 18 18 N 1.34771 * 119.99578 * 179.97438 * 16 14 13 19 19 C 1.39897 * 119.99508 * 174.44175 * 18 16 14 20 20 C 1.38745 * 120.10825 * 335.07229 * 19 18 16 21 21 C 1.38196 * 119.99728 * 179.74392 * 20 19 18 22 22 C 1.38317 * 120.21182 * 0.55663 * 21 20 19 23 23 C 1.38210 * 120.21002 * 359.70126 * 22 21 20 24 24 C 1.38732 * 119.99798 * 0.02562 * 23 22 21 25 25 N 1.39834 * 120.10294 * 180.02562 * 24 23 22 26 26 C 1.48532 * 111.00150 * 7.36538 * 25 24 23 27 27 C 1.54933 * 103.22815 * 159.72059 * 26 25 24 28 28 C 1.54595 * 102.92195 * 322.58300 * 27 26 25 29 29 C 1.47897 * 110.99824 * 124.75919 * 25 24 23 30 30 H 1.08995 * 109.47372 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46958 * 299.99995 * 1 2 3 32 32 H 1.09004 * 109.47495 * 59.99399 * 1 2 3 33 33 H 1.09003 * 109.46682 * 240.00457 * 2 1 3 34 34 H 1.08995 * 109.46928 * 120.00562 * 2 1 3 35 35 H 0.96992 * 119.99913 * 180.02562 * 8 7 5 36 36 H 0.97002 * 120.00556 * 94.99702 * 13 3 2 37 37 H 0.96998 * 120.00459 * 354.44357 * 18 16 14 38 38 H 1.07997 * 120.00031 * 0.02562 * 20 19 18 39 39 H 1.08001 * 119.89373 * 180.29973 * 21 20 19 40 40 H 1.07995 * 119.89645 * 179.72100 * 22 21 20 41 41 H 1.07997 * 120.00240 * 180.02562 * 23 22 21 42 42 H 1.09007 * 110.66482 * 278.15347 * 26 25 24 43 43 H 1.08997 * 110.66728 * 41.27891 * 26 25 24 44 44 H 1.09007 * 110.72142 * 204.22696 * 27 26 25 45 45 H 1.08997 * 110.72979 * 80.94565 * 27 26 25 46 46 H 1.09004 * 110.31001 * 263.04568 * 28 27 26 47 47 H 1.09000 * 110.30786 * 140.87867 * 28 27 26 48 48 H 1.09000 * 109.92071 * 333.51047 * 29 25 24 49 49 H 1.08999 * 109.92143 * 94.80622 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3367 -2.1730 9 14 6.0049 0.8800 -1.3812 10 1 6.5988 1.5451 -0.1937 11 1 6.4961 -0.5190 -1.4629 12 1 6.3999 1.6158 -2.6092 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3398 2.6327 0.4336 16 6 0.0403 3.3323 2.6429 17 8 0.8156 3.3644 3.5764 18 7 -1.1767 3.8997 2.7579 19 6 -1.5913 4.4225 3.9875 20 6 -1.0464 3.9394 5.1684 21 6 -1.4538 4.4612 6.3815 22 6 -2.4128 5.4570 6.4241 23 6 -2.9653 5.9408 5.2532 24 6 -2.5587 5.4273 4.0303 25 7 -3.1158 5.9156 2.8444 26 6 -3.9838 7.0916 3.1086 27 6 -4.0666 7.7886 1.7275 28 6 -2.6426 7.5963 1.1572 29 6 -2.0631 6.3909 1.9207 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.8292 -0.0617 -2.9495 36 1 2.2719 2.1230 1.9979 37 1 -1.7652 3.9455 1.9881 38 1 -0.3006 3.1589 5.1395 39 1 -1.0249 4.0873 7.2996 40 1 -2.7307 5.8579 7.3751 41 1 -3.7136 6.7187 5.2903 42 1 -4.9727 6.7733 3.4389 43 1 -3.5247 7.7507 3.8454 44 1 -4.2959 8.8480 1.8432 45 1 -4.8056 7.3002 1.0925 46 1 -2.0387 8.4853 1.3395 47 1 -2.6884 7.3815 0.0896 48 1 -1.1834 6.6978 2.4864 49 1 -1.7992 5.5993 1.2193 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128314739.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:10 Heat of formation + Delta-G solvation = -42.571156 kcal Electronic energy + Delta-G solvation = -30817.780446 eV Core-core repulsion = 26744.399121 eV Total energy + Delta-G solvation = -4073.381325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.39995 -41.16664 -39.84445 -38.51071 -37.24668 -36.05269 -34.33993 -33.59620 -32.85003 -31.18032 -29.95625 -29.35728 -29.08754 -26.34603 -24.90410 -24.35060 -23.28202 -22.12265 -21.85894 -21.42404 -21.14417 -19.94842 -18.79966 -18.19102 -18.01277 -17.35900 -17.15906 -17.03780 -16.89515 -16.20646 -15.90827 -15.69842 -15.47453 -15.23135 -15.00970 -14.66205 -14.59149 -14.37784 -13.96435 -13.86768 -13.53761 -13.32116 -13.23298 -13.11044 -13.05452 -12.89684 -12.72681 -12.54052 -12.41404 -12.25091 -12.13735 -12.09971 -12.03190 -11.63148 -11.55342 -11.46858 -11.11661 -10.69410 -10.62655 -10.52930 -9.87501 -9.46451 -8.73140 -8.20158 -6.37237 -0.07679 0.36939 0.67559 1.29693 1.43135 1.45758 1.57068 2.12386 2.38075 2.60829 2.73235 2.96131 3.09713 3.45789 3.56103 3.64954 3.88765 3.98870 4.15429 4.24880 4.29598 4.38897 4.45026 4.45831 4.52105 4.57242 4.59775 4.68695 4.77730 4.81204 4.86977 4.92329 4.99417 5.05066 5.12263 5.18218 5.21290 5.28389 5.33209 5.36581 5.38360 5.54139 5.58743 5.65783 5.74741 5.76344 5.81476 5.98989 6.09064 6.21554 6.50807 6.65029 6.76227 7.07221 7.34646 8.85307 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.002704 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.297568 B =10353.855327 C =11097.152669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.277 3.723 4 H 0.015 0.985 5 C -0.553 4.553 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.281 1.281 13 N -0.669 5.669 14 C 0.495 3.505 15 O -0.546 6.546 16 C 0.510 3.490 17 O -0.518 6.518 18 N -0.629 5.629 19 C 0.101 3.899 20 C -0.129 4.129 21 C -0.127 4.127 22 C -0.104 4.104 23 C -0.146 4.146 24 C 0.069 3.931 25 N -0.482 5.482 26 C 0.031 3.969 27 C -0.117 4.117 28 C -0.130 4.130 29 C 0.034 3.966 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.267 0.733 36 H 0.408 0.592 37 H 0.425 0.575 38 H 0.128 0.872 39 H 0.145 0.855 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.102 0.898 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.039 0.961 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.421 14.667 14.609 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.033 0.967 5 C -0.591 4.591 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.794 3.206 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.207 1.207 13 N -0.319 5.319 14 C 0.275 3.725 15 O -0.425 6.425 16 C 0.293 3.707 17 O -0.394 6.394 18 N -0.275 5.275 19 C 0.005 3.995 20 C -0.149 4.149 21 C -0.146 4.146 22 C -0.123 4.123 23 C -0.167 4.167 24 C -0.031 4.031 25 N -0.198 5.198 26 C -0.095 4.095 27 C -0.155 4.155 28 C -0.168 4.168 29 C -0.092 4.092 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.243 0.757 37 H 0.266 0.734 38 H 0.145 0.855 39 H 0.162 0.838 40 H 0.176 0.824 41 H 0.177 0.823 42 H 0.120 0.880 43 H 0.089 0.911 44 H 0.117 0.883 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.058 0.942 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.674 14.110 14.045 25.339 hybrid contribution 1.598 -0.001 -0.355 1.637 sum -14.076 14.109 13.690 24.179 Atomic orbital electron populations 1.21709 0.96681 0.99671 1.00309 1.21819 0.94015 0.98589 1.01744 1.18649 0.94145 0.89543 0.80219 0.96704 1.21538 0.91140 1.39523 1.06910 0.91414 1.25687 1.03221 0.94146 0.94862 1.70017 1.36957 1.37953 1.09801 0.85337 0.79162 0.77936 0.78159 1.18943 1.20257 1.20694 1.46234 1.14170 1.53061 1.18390 1.19985 0.83752 0.80920 0.87861 1.90733 1.51475 1.59957 1.40365 1.20366 0.82344 0.79567 0.88452 1.90688 1.51193 1.57369 1.40110 1.43263 1.16104 1.55448 1.12698 1.17727 0.99604 0.97160 0.84978 1.21356 1.01134 1.00941 0.91496 1.21280 0.98258 0.97980 0.97090 1.21408 0.95540 0.96198 0.99104 1.21413 1.03219 1.01650 0.90388 1.18978 0.96441 0.95745 0.91890 1.61882 1.16947 1.31117 1.09885 1.23574 0.97895 0.89516 0.98500 1.22519 0.96077 1.01842 0.95098 1.22440 0.97366 0.96592 1.00450 1.22999 0.92954 0.98085 0.95189 0.93185 0.94372 0.94556 0.90185 0.94144 0.92344 0.75654 0.73447 0.85463 0.83750 0.82444 0.82321 0.88001 0.91072 0.88332 0.90441 0.90177 0.90447 0.94242 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 8.52 71.98 0.61 -4.91 16 2 C -0.12 -5.96 5.45 30.59 0.17 -5.80 16 3 C 0.28 14.05 2.24 44.24 0.10 14.15 16 4 H 0.02 0.88 7.58 -2.39 -0.02 0.86 16 5 C -0.55 -29.32 8.73 25.60 0.22 -29.10 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 7 C 0.02 1.15 5.29 84.65 0.45 1.60 16 8 N -0.91 -50.69 11.29 21.45 0.24 -50.45 16 9 Si 0.97 41.99 29.54 68.60 2.03 44.02 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 13 N -0.67 -29.11 5.01 -447.56 -2.24 -31.36 16 14 C 0.49 20.26 6.45 87.23 0.56 20.83 16 15 O -0.55 -24.24 13.62 -3.29 -0.04 -24.29 16 16 C 0.51 18.21 7.69 87.23 0.67 18.88 16 17 O -0.52 -19.35 13.65 -3.37 -0.05 -19.39 16 18 N -0.63 -19.36 4.23 -304.40 -1.29 -20.64 16 19 C 0.10 2.83 6.14 38.29 0.23 3.06 16 20 C -0.13 -3.52 8.72 22.38 0.20 -3.33 16 21 C -0.13 -2.58 10.04 22.28 0.22 -2.35 16 22 C -0.10 -1.65 10.04 22.28 0.22 -1.43 16 23 C -0.15 -2.50 8.81 22.38 0.20 -2.30 16 24 C 0.07 1.58 5.45 38.30 0.21 1.79 16 25 N -0.48 -9.94 5.05 -682.18 -3.45 -13.38 16 26 C 0.03 0.41 5.19 86.65 0.45 0.86 16 27 C -0.12 -1.38 7.06 31.80 0.22 -1.16 16 28 C -0.13 -2.07 6.93 31.47 0.22 -1.85 16 29 C 0.03 0.74 5.21 86.45 0.45 1.19 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.04 1.62 5.65 -2.39 -0.01 1.60 16 32 H 0.04 1.67 7.85 -2.39 -0.02 1.65 16 33 H 0.08 4.30 5.95 -2.39 -0.01 4.29 16 34 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 36 H 0.41 16.62 8.01 -92.71 -0.74 15.87 16 37 H 0.43 12.85 6.07 -92.71 -0.56 12.29 16 38 H 0.13 3.97 5.79 -2.91 -0.02 3.95 16 39 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 40 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.16 1.76 5.92 -2.91 -0.02 1.74 16 42 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.07 0.80 6.56 -2.39 -0.02 0.79 16 44 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 45 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.04 0.97 7.69 -2.39 -0.02 0.95 16 49 H 0.07 1.70 6.41 -2.39 -0.02 1.68 16 Total: -1.00 -63.58 384.28 0.30 -63.27 By element: Atomic # 1 Polarization: 42.40 SS G_CDS: -0.31 Total: 42.09 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 5.41 Total: 10.13 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -6.73 Total: -115.83 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -0.09 Total: -43.68 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -63.58 0.30 -63.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128314739.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.701 kcal (2) G-P(sol) polarization free energy of solvation -63.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds