Wall clock time and date at job start Wed Apr 1 2020 02:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47299 * 2 1 4 4 H 1.09000 * 109.46459 * 55.00008 * 3 2 1 5 5 C 1.50694 * 109.47165 * 174.99951 * 3 2 1 6 6 H 1.07994 * 120.00001 * 120.00404 * 5 3 2 7 7 C 1.37881 * 119.99986 * 300.00374 * 5 3 2 8 8 N 1.31515 * 120.00311 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99859 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47555 * 59.99671 * 9 7 5 11 11 H 1.48498 * 109.47116 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47026 * 299.99778 * 9 7 5 13 13 N 1.46495 * 109.47091 * 295.00441 * 3 2 1 14 14 C 1.34779 * 120.00402 * 84.99818 * 13 3 2 15 15 O 1.21357 * 119.99811 * 359.97438 * 14 13 3 16 16 C 1.49350 * 119.99936 * 179.97438 * 14 13 3 17 17 O 1.21374 * 120.00046 * 0.02562 * 16 14 13 18 18 N 1.34784 * 119.99782 * 179.97438 * 16 14 13 19 19 C 1.39718 * 119.99656 * 185.34302 * 18 16 14 20 20 C 1.39007 * 120.03714 * 214.77112 * 19 18 16 21 21 C 1.38124 * 120.07689 * 180.02562 * 20 19 18 22 22 C 1.38190 * 120.14726 * 0.02562 * 21 20 19 23 23 C 1.38952 * 120.07181 * 359.97438 * 22 21 20 24 24 N 1.39677 * 120.03360 * 180.02562 * 23 22 21 25 25 C 1.47898 * 111.00225 * 234.93624 * 24 23 22 26 26 C 1.53999 * 107.05795 * 214.15615 * 25 24 23 27 27 C 1.54590 * 105.14014 * 1.22620 * 26 25 24 28 28 C 1.48534 * 110.99681 * 117.53975 * 24 23 22 29 29 C 1.38772 * 120.03998 * 35.05824 * 19 18 16 30 30 H 1.08996 * 109.47182 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47579 * 299.99893 * 1 2 3 32 32 H 1.09006 * 109.47051 * 59.99530 * 1 2 3 33 33 H 1.09004 * 109.47402 * 240.00398 * 2 1 3 34 34 H 1.08997 * 109.47178 * 120.00736 * 2 1 3 35 35 H 0.96995 * 119.99928 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99608 * 264.99643 * 13 3 2 37 37 H 0.96998 * 119.99782 * 5.35310 * 18 16 14 38 38 H 1.08007 * 119.96128 * 0.03294 * 20 19 18 39 39 H 1.07998 * 119.92760 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.96234 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.91956 * 94.80269 * 25 24 23 42 42 H 1.09004 * 109.92076 * 333.51082 * 25 24 23 43 43 H 1.09004 * 110.30615 * 120.14118 * 26 25 24 44 44 H 1.08999 * 110.30648 * 242.30884 * 26 25 24 45 45 H 1.08992 * 110.72520 * 140.31475 * 27 26 25 46 46 H 1.09000 * 110.72110 * 263.59827 * 27 26 25 47 47 H 1.09001 * 110.66935 * 41.28745 * 28 24 23 48 48 H 1.08995 * 110.66876 * 278.15320 * 28 24 23 49 49 H 1.07994 * 120.07701 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0049 0.8811 1.3818 10 1 6.4995 2.2813 1.3822 11 1 6.3977 0.2176 2.6509 12 1 6.5975 0.1472 0.2348 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3669 15 8 -0.3401 2.6320 -0.4337 16 6 0.0402 3.3327 -2.6428 17 8 0.8154 3.3648 -3.5762 18 7 -1.1773 3.8992 -2.7581 19 6 -1.5896 4.4254 -3.9850 20 6 -2.3906 5.5609 -4.0212 21 6 -2.7991 6.0815 -5.2337 22 6 -2.4136 5.4756 -6.4143 23 6 -1.6129 4.3404 -6.3853 24 7 -1.2234 3.7289 -7.5792 25 6 -1.5990 2.2985 -7.5893 26 6 -0.5017 1.5488 -8.3674 27 6 0.5248 2.6342 -8.7647 28 6 0.2533 3.7609 -7.7364 29 6 -1.2047 3.8117 -5.1687 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8292 -0.0605 2.9502 36 1 2.2719 2.1232 -1.9977 37 1 -1.7672 3.9417 -1.9893 38 1 -2.6939 6.0367 -3.1003 39 1 -3.4211 6.9640 -5.2590 40 1 -2.7344 5.8855 -7.3607 41 1 -2.5604 2.1705 -8.0869 42 1 -1.6536 1.9216 -6.5680 43 1 -0.0320 0.7987 -7.7309 44 1 -0.9217 1.0811 -9.2579 45 1 1.5427 2.2576 -8.6645 46 1 0.3407 2.9859 -9.7799 47 1 0.7459 3.5436 -6.7886 48 1 0.5777 4.7251 -8.1276 49 1 -0.5859 2.9270 -5.1433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128456173.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:15 Heat of formation + Delta-G solvation = -33.565298 kcal Electronic energy + Delta-G solvation = -30398.479473 eV Core-core repulsion = 26325.488671 eV Total energy + Delta-G solvation = -4072.990802 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.03027 -39.99035 -38.60180 -37.62043 -35.53903 -34.74534 -32.63806 -32.43262 -31.05201 -30.01866 -29.09527 -28.57622 -27.32602 -24.97538 -23.54965 -23.03596 -21.95421 -21.16775 -20.86184 -20.29077 -19.53395 -18.60590 -17.76545 -16.66078 -16.37623 -16.22130 -15.98117 -15.66881 -15.43511 -15.17293 -14.80735 -14.32909 -14.24087 -14.09509 -13.70894 -13.39695 -13.37709 -13.06852 -12.78976 -12.57408 -12.28976 -12.13005 -11.98471 -11.66287 -11.63091 -11.57798 -11.39177 -11.36086 -11.23418 -11.03181 -10.89140 -10.80374 -10.46493 -10.39767 -10.31344 -9.75387 -9.20615 -9.17280 -8.89451 -8.77241 -8.60654 -8.29022 -8.08959 -6.21289 -4.31355 0.99553 1.13885 1.85794 2.62393 3.22376 3.27470 3.29562 3.46316 3.66491 3.70913 4.02744 4.29621 4.41874 4.57199 4.72054 4.77116 4.93888 5.02498 5.09822 5.10344 5.11009 5.25042 5.28882 5.41231 5.44245 5.56724 5.59356 5.64699 5.74578 5.79455 5.92620 6.07399 6.15156 6.23560 6.26336 6.30935 6.36099 6.50069 6.50264 6.66903 6.88937 6.94440 7.07669 7.12327 7.21995 7.22375 7.44244 7.58667 7.72871 7.85189 8.03424 8.38107 8.56340 8.80564 9.35589 10.84066 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.002638 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.665930 B =10611.201435 C =11571.527596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.539 4.539 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.667 5.667 14 C 0.494 3.506 15 O -0.528 6.528 16 C 0.507 3.493 17 O -0.506 6.506 18 N -0.653 5.653 19 C 0.159 3.841 20 C -0.146 4.146 21 C -0.095 4.095 22 C -0.112 4.112 23 C 0.097 3.903 24 N -0.482 5.482 25 C 0.036 3.964 26 C -0.132 4.132 27 C -0.123 4.123 28 C 0.035 3.965 29 C -0.150 4.150 30 H 0.026 0.974 31 H 0.052 0.948 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.104 0.896 35 H 0.267 0.733 36 H 0.401 0.599 37 H 0.423 0.577 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.059 0.941 48 H 0.084 0.916 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.425 6.734 -17.935 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.168 3.832 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.315 5.315 14 C 0.272 3.728 15 O -0.407 6.407 16 C 0.290 3.710 17 O -0.380 6.380 18 N -0.300 5.300 19 C 0.064 3.936 20 C -0.166 4.166 21 C -0.114 4.114 22 C -0.131 4.131 23 C 0.002 3.998 24 N -0.204 5.204 25 C -0.091 4.091 26 C -0.170 4.170 27 C -0.161 4.161 28 C -0.091 4.091 29 C -0.173 4.173 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.236 0.764 37 H 0.261 0.739 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.102 0.898 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.580 6.823 -18.094 22.540 hybrid contribution 1.343 -0.425 0.887 1.665 sum -10.237 6.397 -17.207 21.019 Atomic orbital electron populations 1.21855 0.98307 0.98442 1.01009 1.21967 0.92630 0.99389 1.02790 1.19018 0.94794 0.89382 0.80044 0.92724 1.21163 0.90281 1.39617 1.06645 0.91826 1.24870 0.98864 0.94544 0.95203 1.69868 1.35404 1.37304 1.09308 0.86462 0.84455 0.78448 0.77520 1.20078 1.21055 1.20034 1.46470 1.13309 1.52520 1.19234 1.19578 0.84565 0.81583 0.87026 1.90746 1.51094 1.59539 1.39312 1.21048 0.81448 0.78724 0.89796 1.90732 1.50462 1.56163 1.40618 1.43287 1.17397 1.57421 1.11924 1.17611 0.97403 0.93494 0.85082 1.20986 1.01552 0.94971 0.99126 1.20877 0.99487 0.99600 0.91411 1.20963 0.98268 0.95405 0.98497 1.18840 0.97289 0.95530 0.88099 1.62521 1.13023 1.14026 1.30784 1.23006 0.99454 0.86506 1.00101 1.22417 0.96176 0.98054 1.00379 1.22484 0.99144 0.95104 0.99348 1.23398 0.86482 0.99936 0.99242 1.21615 1.02439 1.01577 0.91622 0.95441 0.92900 0.94705 0.94684 0.87799 0.92339 0.76435 0.73867 0.85350 0.85206 0.85304 0.90063 0.92982 0.91175 0.90833 0.90682 0.90699 0.92227 0.89790 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.62 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.52 2.24 -69.09 -0.15 6.37 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.94 8.73 -34.44 -0.30 -14.24 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -23.92 11.30 55.43 0.63 -23.29 16 9 Si 0.90 20.28 29.54 -169.99 -5.02 15.25 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 13 N -0.67 -13.87 5.01 -55.40 -0.28 -14.15 16 14 C 0.49 9.56 6.46 -11.63 -0.08 9.49 16 15 O -0.53 -11.04 13.62 5.49 0.07 -10.97 16 16 C 0.51 8.51 7.61 -11.63 -0.09 8.42 16 17 O -0.51 -9.13 14.28 5.48 0.08 -9.05 16 18 N -0.65 -9.02 5.32 -10.32 -0.05 -9.08 16 19 C 0.16 2.06 6.24 -83.78 -0.52 1.54 16 20 C -0.15 -1.53 9.96 -39.34 -0.39 -1.92 16 21 C -0.09 -0.87 10.03 -39.64 -0.40 -1.27 16 22 C -0.11 -1.15 9.97 -39.33 -0.39 -1.54 16 23 C 0.10 1.16 4.86 -83.82 -0.41 0.75 16 24 N -0.48 -5.33 5.27 -167.18 -0.88 -6.21 16 25 C 0.04 0.36 6.48 -2.75 -0.02 0.34 16 26 C -0.13 -1.14 6.93 -25.37 -0.18 -1.32 16 27 C -0.12 -1.06 7.06 -24.87 -0.18 -1.24 16 28 C 0.04 0.38 6.43 -1.89 -0.01 0.36 16 29 C -0.15 -2.02 6.49 -39.18 -0.25 -2.28 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 32 H 0.03 0.71 5.64 -51.93 -0.29 0.42 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 35 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.40 7.87 8.01 -40.82 -0.33 7.54 16 37 H 0.42 5.16 8.30 -40.82 -0.34 4.82 16 38 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.58 6.33 -51.93 -0.33 0.25 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.75 6.99 -51.93 -0.36 0.39 16 48 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.13 2.01 5.52 -52.49 -0.29 1.72 16 LS Contribution 391.93 15.07 5.91 5.91 Total: -1.00 -28.73 391.93 -10.08 -38.81 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -7.24 Total: 13.37 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -3.29 Total: -0.60 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.59 Total: -52.72 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.15 Total: -20.02 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.73 -10.08 -38.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128456173.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.246 kcal (2) G-P(sol) polarization free energy of solvation -28.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds