Wall clock time and date at job start Wed Apr 1 2020 02:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47299 * 2 1 4 4 H 1.09000 * 109.46459 * 55.00008 * 3 2 1 5 5 C 1.50694 * 109.47165 * 174.99951 * 3 2 1 6 6 H 1.07994 * 120.00001 * 120.00404 * 5 3 2 7 7 C 1.37881 * 119.99986 * 300.00374 * 5 3 2 8 8 N 1.31515 * 120.00311 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99859 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47555 * 59.99671 * 9 7 5 11 11 H 1.48498 * 109.47116 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47026 * 299.99778 * 9 7 5 13 13 N 1.46495 * 109.47091 * 295.00441 * 3 2 1 14 14 C 1.34779 * 120.00402 * 84.99818 * 13 3 2 15 15 O 1.21357 * 119.99811 * 359.97438 * 14 13 3 16 16 C 1.49350 * 119.99936 * 179.97438 * 14 13 3 17 17 O 1.21374 * 120.00046 * 0.02562 * 16 14 13 18 18 N 1.34784 * 119.99782 * 179.97438 * 16 14 13 19 19 C 1.39718 * 119.99656 * 185.34302 * 18 16 14 20 20 C 1.39007 * 120.03714 * 214.77112 * 19 18 16 21 21 C 1.38124 * 120.07689 * 180.02562 * 20 19 18 22 22 C 1.38190 * 120.14726 * 0.02562 * 21 20 19 23 23 C 1.38952 * 120.07181 * 359.97438 * 22 21 20 24 24 N 1.39677 * 120.03360 * 180.02562 * 23 22 21 25 25 C 1.47898 * 111.00225 * 234.93624 * 24 23 22 26 26 C 1.53999 * 107.05795 * 214.15615 * 25 24 23 27 27 C 1.54590 * 105.14014 * 1.22620 * 26 25 24 28 28 C 1.48534 * 110.99681 * 117.53975 * 24 23 22 29 29 C 1.38772 * 120.03998 * 35.05824 * 19 18 16 30 30 H 1.08996 * 109.47182 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47579 * 299.99893 * 1 2 3 32 32 H 1.09006 * 109.47051 * 59.99530 * 1 2 3 33 33 H 1.09004 * 109.47402 * 240.00398 * 2 1 3 34 34 H 1.08997 * 109.47178 * 120.00736 * 2 1 3 35 35 H 0.96995 * 119.99928 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99608 * 264.99643 * 13 3 2 37 37 H 0.96998 * 119.99782 * 5.35310 * 18 16 14 38 38 H 1.08007 * 119.96128 * 0.03294 * 20 19 18 39 39 H 1.07998 * 119.92760 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.96234 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.91956 * 94.80269 * 25 24 23 42 42 H 1.09004 * 109.92076 * 333.51082 * 25 24 23 43 43 H 1.09004 * 110.30615 * 120.14118 * 26 25 24 44 44 H 1.08999 * 110.30648 * 242.30884 * 26 25 24 45 45 H 1.08992 * 110.72520 * 140.31475 * 27 26 25 46 46 H 1.09000 * 110.72110 * 263.59827 * 27 26 25 47 47 H 1.09001 * 110.66935 * 41.28745 * 28 24 23 48 48 H 1.08995 * 110.66876 * 278.15320 * 28 24 23 49 49 H 1.07994 * 120.07701 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0049 0.8811 1.3818 10 1 6.4995 2.2813 1.3822 11 1 6.3977 0.2176 2.6509 12 1 6.5975 0.1472 0.2348 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3669 15 8 -0.3401 2.6320 -0.4337 16 6 0.0402 3.3327 -2.6428 17 8 0.8154 3.3648 -3.5762 18 7 -1.1773 3.8992 -2.7581 19 6 -1.5896 4.4254 -3.9850 20 6 -2.3906 5.5609 -4.0212 21 6 -2.7991 6.0815 -5.2337 22 6 -2.4136 5.4756 -6.4143 23 6 -1.6129 4.3404 -6.3853 24 7 -1.2234 3.7289 -7.5792 25 6 -1.5990 2.2985 -7.5893 26 6 -0.5017 1.5488 -8.3674 27 6 0.5248 2.6342 -8.7647 28 6 0.2533 3.7609 -7.7364 29 6 -1.2047 3.8117 -5.1687 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8292 -0.0605 2.9502 36 1 2.2719 2.1232 -1.9977 37 1 -1.7672 3.9417 -1.9893 38 1 -2.6939 6.0367 -3.1003 39 1 -3.4211 6.9640 -5.2590 40 1 -2.7344 5.8855 -7.3607 41 1 -2.5604 2.1705 -8.0869 42 1 -1.6536 1.9216 -6.5680 43 1 -0.0320 0.7987 -7.7309 44 1 -0.9217 1.0811 -9.2579 45 1 1.5427 2.2576 -8.6645 46 1 0.3407 2.9859 -9.7799 47 1 0.7459 3.5436 -6.7886 48 1 0.5777 4.7251 -8.1276 49 1 -0.5859 2.9270 -5.1433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128456173.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:14 Heat of formation + Delta-G solvation = -51.836615 kcal Electronic energy + Delta-G solvation = -30399.271777 eV Core-core repulsion = 26325.488671 eV Total energy + Delta-G solvation = -4073.783106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.23240 -41.10605 -39.95548 -38.65637 -37.24359 -35.98511 -34.35570 -33.40024 -32.86687 -31.02038 -29.88413 -29.42909 -29.18902 -26.44697 -24.94347 -24.29811 -23.10867 -21.95279 -21.81640 -21.71362 -21.22414 -20.02737 -18.86063 -18.21003 -17.80410 -17.20629 -17.13201 -17.09483 -16.73501 -16.49457 -16.08194 -15.82663 -15.40605 -15.08605 -14.99927 -14.67526 -14.62360 -14.25098 -13.93436 -13.83496 -13.55189 -13.44557 -13.23241 -13.14443 -13.01592 -12.88430 -12.69748 -12.58122 -12.41087 -12.28031 -12.18931 -12.14351 -12.12447 -11.64268 -11.52267 -11.47973 -11.15255 -10.70315 -10.56907 -9.89424 -9.80107 -9.65191 -9.25409 -8.21194 -6.38604 -0.08175 0.25800 0.60385 1.28426 1.44672 1.45256 1.53528 2.09898 2.37235 2.68595 2.70897 2.87292 3.08614 3.44491 3.65138 3.83985 3.92191 4.00878 4.11322 4.25606 4.28456 4.39803 4.44299 4.45711 4.50611 4.54682 4.63535 4.67142 4.78477 4.84207 4.89304 4.97667 4.99385 5.08154 5.14661 5.17727 5.21275 5.22305 5.31444 5.34966 5.42437 5.45907 5.52639 5.64335 5.68664 5.75293 5.80655 5.95657 6.07749 6.33114 6.50688 6.63034 6.74446 7.04916 7.33269 8.83832 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.002638 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.665930 B =10611.201435 C =11571.527596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.277 3.723 4 H 0.016 0.984 5 C -0.557 4.557 6 H 0.067 0.933 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.267 1.267 13 N -0.670 5.670 14 C 0.496 3.504 15 O -0.544 6.544 16 C 0.514 3.486 17 O -0.522 6.522 18 N -0.636 5.636 19 C 0.131 3.869 20 C -0.140 4.140 21 C -0.084 4.084 22 C -0.108 4.108 23 C 0.084 3.916 24 N -0.480 5.480 25 C 0.033 3.967 26 C -0.130 4.130 27 C -0.117 4.117 28 C 0.033 3.967 29 C -0.164 4.164 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.268 0.732 36 H 0.407 0.593 37 H 0.430 0.570 38 H 0.152 0.848 39 H 0.168 0.832 40 H 0.149 0.851 41 H 0.092 0.908 42 H 0.033 0.967 43 H 0.062 0.938 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.032 0.968 48 H 0.089 0.911 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.297 8.013 -19.877 24.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.034 0.966 5 C -0.595 4.595 6 H 0.085 0.915 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.192 1.192 13 N -0.320 5.320 14 C 0.275 3.725 15 O -0.423 6.423 16 C 0.296 3.704 17 O -0.397 6.397 18 N -0.284 5.284 19 C 0.037 3.963 20 C -0.160 4.160 21 C -0.103 4.103 22 C -0.127 4.127 23 C -0.011 4.011 24 N -0.201 5.201 25 C -0.093 4.093 26 C -0.168 4.168 27 C -0.155 4.155 28 C -0.093 4.093 29 C -0.187 4.187 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.242 0.758 37 H 0.270 0.730 38 H 0.170 0.830 39 H 0.185 0.815 40 H 0.166 0.834 41 H 0.110 0.890 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.108 0.892 47 H 0.050 0.950 48 H 0.108 0.892 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.492 8.121 -20.062 24.990 hybrid contribution 1.497 -0.748 1.447 2.212 sum -10.995 7.374 -18.615 22.843 Atomic orbital electron populations 1.21707 0.96580 0.99701 1.00363 1.21821 0.94114 0.98560 1.01697 1.18640 0.94090 0.89556 0.80217 0.96646 1.21485 0.91216 1.39757 1.07008 0.91468 1.25677 1.03215 0.94090 0.94828 1.69997 1.37118 1.37834 1.09722 0.85454 0.79144 0.78469 0.77644 1.19770 1.20755 1.19198 1.46247 1.14250 1.53088 1.18373 1.19971 0.83734 0.80900 0.87856 1.90730 1.51406 1.59913 1.40299 1.20381 0.82462 0.79223 0.88287 1.90737 1.51236 1.57195 1.40581 1.43115 1.16182 1.56250 1.12810 1.17857 0.99214 0.95059 0.84137 1.21299 1.00122 0.93725 1.00851 1.21308 0.98665 1.00084 0.90253 1.21290 0.97074 0.94395 0.99946 1.19065 0.97920 0.96348 0.87771 1.62621 1.12952 1.14375 1.30189 1.23058 1.00543 0.86305 0.99416 1.22430 0.95769 0.97835 1.00796 1.22489 0.99405 0.94259 0.99363 1.23399 0.86341 1.01014 0.98554 1.21519 1.02995 1.01358 0.92785 0.93187 0.94444 0.94318 0.94264 0.90189 0.92292 0.75757 0.72996 0.83040 0.81467 0.83364 0.88951 0.94845 0.91872 0.88916 0.90249 0.89246 0.94995 0.89241 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.39 8.51 71.98 0.61 -4.77 16 2 C -0.12 -5.90 5.45 30.59 0.17 -5.73 16 3 C 0.28 13.92 2.24 44.25 0.10 14.02 16 4 H 0.02 0.90 7.58 -2.39 -0.02 0.89 16 5 C -0.56 -29.35 8.73 25.60 0.22 -29.13 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.38 16 7 C 0.02 1.21 5.29 84.66 0.45 1.66 16 8 N -0.91 -50.39 11.30 21.45 0.24 -50.15 16 9 Si 0.97 41.72 29.54 68.60 2.03 43.75 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 12 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 13 N -0.67 -28.72 5.01 -447.54 -2.24 -30.96 16 14 C 0.50 19.65 6.46 87.24 0.56 20.21 16 15 O -0.54 -23.25 13.62 -3.27 -0.04 -23.30 16 16 C 0.51 17.59 7.61 87.24 0.66 18.26 16 17 O -0.52 -19.40 14.28 -3.32 -0.05 -19.45 16 18 N -0.64 -17.49 5.32 -304.90 -1.62 -19.12 16 19 C 0.13 3.32 6.24 38.20 0.24 3.56 16 20 C -0.14 -2.58 9.96 22.43 0.22 -2.36 16 21 C -0.08 -1.26 10.03 22.23 0.22 -1.04 16 22 C -0.11 -1.93 9.97 22.43 0.22 -1.71 16 23 C 0.08 1.93 4.86 38.19 0.19 2.12 16 24 N -0.48 -10.26 5.27 -682.84 -3.60 -13.86 16 25 C 0.03 0.66 6.48 86.45 0.56 1.22 16 26 C -0.13 -2.15 6.93 31.47 0.22 -1.93 16 27 C -0.12 -1.91 7.06 31.80 0.22 -1.68 16 28 C 0.03 0.70 6.43 86.65 0.56 1.25 16 29 C -0.16 -4.48 6.49 22.53 0.15 -4.33 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.04 1.68 7.85 -2.39 -0.02 1.66 16 32 H 0.04 1.59 5.64 -2.38 -0.01 1.58 16 33 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.08 4.25 5.95 -2.39 -0.01 4.24 16 35 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 36 H 0.41 16.43 8.01 -92.71 -0.74 15.69 16 37 H 0.43 10.30 8.30 -92.71 -0.77 9.53 16 38 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 40 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 41 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 42 H 0.03 0.78 6.33 -2.38 -0.02 0.76 16 43 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.03 0.85 6.99 -2.39 -0.02 0.83 16 48 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.11 3.45 5.52 -2.91 -0.02 3.43 16 Total: -1.00 -63.48 391.93 -0.24 -63.72 By element: Atomic # 1 Polarization: 40.27 SS G_CDS: -0.52 Total: 39.75 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 5.58 Total: 9.62 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -7.23 Total: -114.08 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -0.09 Total: -42.75 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -63.48 -0.24 -63.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128456173.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.882 kcal (2) G-P(sol) polarization free energy of solvation -63.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds