Wall clock time and date at job start Wed Apr 1 2020 02:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47119 * 2 1 4 4 H 1.09005 * 109.47414 * 304.58175 * 3 2 1 5 5 C 1.50710 * 109.47235 * 184.58170 * 3 2 1 6 6 H 1.07995 * 120.00024 * 245.50656 * 5 3 2 7 7 C 1.37877 * 119.99676 * 65.50485 * 5 3 2 8 8 N 1.31510 * 119.99894 * 197.96855 * 7 5 3 9 9 Si 1.86795 * 120.00244 * 17.96840 * 7 5 3 10 10 H 1.48499 * 109.47466 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.47129 * 300.00006 * 9 7 5 12 12 H 1.48496 * 109.47291 * 59.99985 * 9 7 5 13 13 N 1.46497 * 109.47387 * 64.58207 * 3 2 1 14 14 C 1.34777 * 120.00308 * 275.00258 * 13 3 2 15 15 O 1.21364 * 119.99731 * 359.97438 * 14 13 3 16 16 C 1.49347 * 120.00416 * 179.97438 * 14 13 3 17 17 O 1.21377 * 119.99853 * 359.97438 * 16 14 13 18 18 N 1.34777 * 120.00416 * 180.02562 * 16 14 13 19 19 C 1.39713 * 120.00489 * 185.21479 * 18 16 14 20 20 C 1.39003 * 120.04166 * 213.52029 * 19 18 16 21 21 C 1.38131 * 120.07542 * 179.69391 * 20 19 18 22 22 C 1.38181 * 120.14661 * 0.60047 * 21 20 19 23 23 C 1.38958 * 120.07582 * 359.67335 * 22 21 20 24 24 N 1.39674 * 120.03535 * 180.02562 * 23 22 21 25 25 C 1.48532 * 111.00000 * 117.38133 * 24 23 22 26 26 C 1.54938 * 103.22882 * 159.72187 * 25 24 23 27 27 C 1.54595 * 102.91936 * 322.58550 * 26 25 24 28 28 C 1.47899 * 111.00233 * 234.78045 * 24 23 22 29 29 C 1.38779 * 120.03767 * 33.79065 * 19 18 16 30 30 H 1.09000 * 109.47033 * 299.99748 * 1 2 3 31 31 H 1.08999 * 109.47018 * 60.00348 * 1 2 3 32 32 H 1.09000 * 109.47210 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47474 * 239.99623 * 2 1 3 34 34 H 1.09000 * 109.47530 * 120.00222 * 2 1 3 35 35 H 0.97009 * 119.99961 * 354.93621 * 8 7 5 36 36 H 0.97003 * 120.00031 * 94.99541 * 13 3 2 37 37 H 0.96999 * 119.99439 * 5.21495 * 18 16 14 38 38 H 1.08001 * 119.96430 * 359.97301 * 20 19 18 39 39 H 1.07998 * 119.92895 * 180.29652 * 21 20 19 40 40 H 1.08003 * 119.96282 * 179.69967 * 22 21 20 41 41 H 1.09000 * 110.66873 * 278.15877 * 25 24 23 42 42 H 1.09003 * 110.66604 * 41.28542 * 25 24 23 43 43 H 1.08997 * 110.71924 * 204.22992 * 26 25 24 44 44 H 1.08994 * 110.72289 * 80.94479 * 26 25 24 45 45 H 1.08994 * 110.30914 * 263.03875 * 27 26 25 46 46 H 1.09000 * 110.30490 * 140.87476 * 27 26 25 47 47 H 1.09003 * 109.91748 * 333.50872 * 28 24 23 48 48 H 1.08998 * 109.92330 * 94.80195 * 28 24 23 49 49 H 1.07998 * 120.07618 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6111 1.9795 -0.8461 5 6 3.5428 1.4440 -0.1135 6 1 4.1457 1.8095 0.7045 7 6 4.1478 0.9787 -1.2617 8 7 5.4199 0.6457 -1.2460 9 14 3.1606 0.8214 -2.8397 10 1 4.0358 0.3028 -3.9216 11 1 2.0298 -0.1168 -2.6247 12 1 2.6316 2.1536 -3.2276 13 7 1.6438 2.1005 1.2475 14 6 0.4258 2.6677 1.3529 15 8 -0.3428 2.6336 0.4142 16 6 0.0217 3.3381 2.6249 17 8 0.7901 3.3717 3.5638 18 7 -1.1966 3.9048 2.7305 19 6 -1.5346 4.6256 3.8786 20 6 -2.8440 4.6174 4.3450 21 6 -3.1777 5.3247 5.4836 22 6 -2.2144 6.0525 6.1557 23 6 -0.9047 6.0696 5.6917 24 7 0.0685 6.8051 6.3721 25 6 1.1353 5.9164 6.8995 26 6 2.3237 6.8846 7.1256 27 6 2.2122 7.8544 5.9268 28 6 0.7470 7.7544 5.4634 29 6 -0.5646 5.3551 4.5516 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8899 35 1 5.9508 0.7960 -0.4481 36 1 2.2582 2.1279 1.9977 37 1 -1.8386 3.8122 2.0094 38 1 -3.6005 4.0538 3.8191 39 1 -4.1948 5.3129 5.8466 40 1 -2.4797 6.6084 7.0429 41 1 0.8262 5.4606 7.8401 42 1 1.3959 5.1519 6.1676 43 1 3.2707 6.3456 7.0989 44 1 2.2103 7.4211 8.0675 45 1 2.8842 7.5451 5.1263 46 1 2.4409 8.8726 6.2415 47 1 0.7060 7.3824 4.4397 48 1 0.2705 8.7328 5.5251 49 1 0.4527 5.3664 4.1892 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128456412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:23 Heat of formation + Delta-G solvation = -32.884224 kcal Electronic energy + Delta-G solvation = -30449.117129 eV Core-core repulsion = 26376.155861 eV Total energy + Delta-G solvation = -4072.961268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.11979 -40.07563 -38.74412 -37.69794 -35.72373 -34.85046 -32.66655 -32.50203 -31.54780 -30.08878 -29.10983 -28.61341 -27.57444 -25.03386 -23.53937 -22.54876 -22.07095 -21.18526 -20.90152 -20.46711 -19.73429 -18.78078 -17.90619 -17.24245 -16.65693 -16.34497 -16.13737 -15.82602 -15.51261 -15.17579 -14.99938 -14.30301 -14.17862 -14.05599 -13.67895 -13.44637 -13.39264 -13.10353 -12.79844 -12.63599 -12.55616 -12.42514 -12.27274 -12.02874 -11.84755 -11.67842 -11.60064 -11.40623 -11.30319 -11.02010 -10.82527 -10.80986 -10.54775 -10.52522 -9.99422 -9.72627 -9.35141 -9.18434 -8.94324 -8.80169 -8.41939 -8.38666 -8.31761 -6.67953 -4.31764 0.93196 1.09323 1.74733 2.50465 3.30812 3.36763 3.37510 3.52178 3.60019 3.64686 3.91666 4.33633 4.40251 4.56204 4.69251 4.74289 4.85170 4.89113 5.05944 5.06536 5.08881 5.20615 5.27871 5.35656 5.41158 5.54199 5.58854 5.63138 5.73414 5.78308 5.91653 5.92960 5.96672 6.01440 6.10140 6.11649 6.19000 6.31220 6.48183 6.50426 6.62012 6.64945 6.73997 6.85357 6.92283 7.13578 7.18837 7.22200 7.44989 7.71464 8.12148 8.20149 8.42315 8.71064 9.37475 10.73316 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.002787 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.239303 B =10044.648059 C =11523.542991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.246 3.754 4 H 0.046 0.954 5 C -0.623 4.623 6 H 0.064 0.936 7 C 0.042 3.958 8 N -0.892 5.892 9 Si 1.039 2.961 10 H -0.282 1.282 11 H -0.269 1.269 12 H -0.279 1.279 13 N -0.660 5.660 14 C 0.495 3.505 15 O -0.530 6.530 16 C 0.507 3.493 17 O -0.504 6.504 18 N -0.651 5.651 19 C 0.158 3.842 20 C -0.146 4.146 21 C -0.094 4.094 22 C -0.111 4.111 23 C 0.098 3.902 24 N -0.482 5.482 25 C 0.035 3.965 26 C -0.123 4.123 27 C -0.132 4.132 28 C 0.036 3.964 29 C -0.151 4.151 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.271 0.729 36 H 0.406 0.594 37 H 0.423 0.577 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.052 0.948 48 H 0.081 0.919 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.362 11.466 14.670 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.144 3.856 4 H 0.064 0.936 5 C -0.661 4.661 6 H 0.082 0.918 7 C -0.166 4.166 8 N -0.525 5.525 9 Si 0.867 3.133 10 H -0.207 1.207 11 H -0.195 1.195 12 H -0.205 1.205 13 N -0.309 5.309 14 C 0.274 3.726 15 O -0.409 6.409 16 C 0.290 3.710 17 O -0.377 6.377 18 N -0.299 5.299 19 C 0.063 3.937 20 C -0.167 4.167 21 C -0.113 4.113 22 C -0.131 4.131 23 C 0.003 3.997 24 N -0.204 5.204 25 C -0.091 4.091 26 C -0.161 4.161 27 C -0.171 4.171 28 C -0.091 4.091 29 C -0.173 4.173 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.241 0.759 37 H 0.261 0.739 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.070 0.930 48 H 0.100 0.900 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.395 11.177 13.441 22.645 hybrid contribution 0.322 0.041 0.973 1.026 sum -14.073 11.219 14.413 23.058 Atomic orbital electron populations 1.21899 0.97359 0.99291 1.01680 1.22365 0.93799 0.99348 1.02340 1.19268 0.96169 0.88669 0.81540 0.93602 1.22053 0.89200 1.49925 1.04884 0.91772 1.25689 0.97323 0.92079 1.01487 1.70873 1.08380 1.39708 1.33496 0.84115 0.75638 0.77711 0.75868 1.20726 1.19493 1.20544 1.46212 1.13578 1.52255 1.18818 1.19652 0.84383 0.81403 0.87210 1.90739 1.51692 1.59453 1.39014 1.20906 0.81848 0.78953 0.89285 1.90745 1.51120 1.56670 1.39166 1.43256 1.16434 1.51000 1.19161 1.17608 0.93902 0.93521 0.88676 1.20961 0.94955 1.02647 0.98112 1.20877 0.99449 0.96477 0.94540 1.20974 0.91278 1.00191 1.00655 1.18853 0.93068 0.95085 0.92663 1.62523 1.11223 1.14791 1.31827 1.23398 0.90096 0.94929 1.00629 1.22484 0.97929 0.96977 0.98691 1.22418 0.95787 1.00467 0.98380 1.23007 0.93872 0.97129 0.95056 1.21648 1.00414 0.97517 0.97770 0.93776 0.92735 0.94648 0.90857 0.92699 0.91911 0.75919 0.73872 0.85364 0.85171 0.85260 0.89784 0.92261 0.90660 0.90674 0.91140 0.90796 0.92989 0.90030 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.51 37.16 0.32 -2.44 16 2 C -0.14 -3.00 5.30 -26.74 -0.14 -3.15 16 3 C 0.25 5.68 1.83 -69.08 -0.13 5.55 16 4 H 0.05 1.12 6.23 -51.93 -0.32 0.80 16 5 C -0.62 -16.48 9.00 -34.44 -0.31 -16.79 16 6 H 0.06 1.80 7.96 -52.49 -0.42 1.38 16 7 C 0.04 1.14 5.30 -17.82 -0.09 1.05 16 8 N -0.89 -26.04 13.69 55.43 0.76 -25.28 16 9 Si 1.04 24.17 26.32 -169.99 -4.47 19.69 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -5.78 5.73 56.52 0.32 -5.46 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.66 -13.37 5.01 -55.40 -0.28 -13.65 16 14 C 0.49 9.17 6.43 -11.63 -0.07 9.09 16 15 O -0.53 -10.39 13.62 5.48 0.07 -10.31 16 16 C 0.51 8.24 7.62 -11.63 -0.09 8.15 16 17 O -0.50 -8.93 14.19 5.47 0.08 -8.85 16 18 N -0.65 -8.63 5.32 -10.32 -0.05 -8.68 16 19 C 0.16 1.99 6.26 -83.78 -0.52 1.46 16 20 C -0.15 -1.47 9.96 -39.34 -0.39 -1.86 16 21 C -0.09 -0.84 10.03 -39.64 -0.40 -1.24 16 22 C -0.11 -1.12 9.97 -39.34 -0.39 -1.51 16 23 C 0.10 1.16 4.86 -83.82 -0.41 0.75 16 24 N -0.48 -5.33 5.27 -167.19 -0.88 -6.21 16 25 C 0.04 0.38 6.43 -1.90 -0.01 0.37 16 26 C -0.12 -1.08 7.06 -24.87 -0.18 -1.26 16 27 C -0.13 -1.18 6.93 -25.37 -0.18 -1.35 16 28 C 0.04 0.37 6.49 -2.75 -0.02 0.35 16 29 C -0.15 -2.01 6.49 -39.18 -0.25 -2.27 16 30 H 0.04 0.82 5.66 -51.93 -0.29 0.53 16 31 H 0.05 1.06 7.82 -51.93 -0.41 0.65 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.63 4.88 -51.93 -0.25 1.38 16 34 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.27 7.84 8.73 -40.82 -0.36 7.49 16 36 H 0.41 7.96 8.00 -40.82 -0.33 7.64 16 37 H 0.42 4.85 8.30 -40.82 -0.34 4.51 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 39 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.75 6.99 -51.93 -0.36 0.39 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.59 6.34 -51.93 -0.33 0.26 16 48 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.13 2.03 5.43 -52.49 -0.28 1.74 16 LS Contribution 387.46 15.07 5.84 5.84 Total: -1.00 -29.86 387.46 -9.42 -39.28 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -7.22 Total: 13.27 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -3.27 Total: -5.10 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.46 Total: -53.82 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.15 Total: -19.16 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -4.47 Total: 19.69 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.86 -9.42 -39.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128456412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.399 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds