Wall clock time and date at job start Wed Apr 1 2020 02:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47119 * 2 1 4 4 H 1.09005 * 109.47414 * 304.58175 * 3 2 1 5 5 C 1.50710 * 109.47235 * 184.58170 * 3 2 1 6 6 H 1.07995 * 120.00024 * 245.50656 * 5 3 2 7 7 C 1.37877 * 119.99676 * 65.50485 * 5 3 2 8 8 N 1.31510 * 119.99894 * 197.96855 * 7 5 3 9 9 Si 1.86795 * 120.00244 * 17.96840 * 7 5 3 10 10 H 1.48499 * 109.47466 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.47129 * 300.00006 * 9 7 5 12 12 H 1.48496 * 109.47291 * 59.99985 * 9 7 5 13 13 N 1.46497 * 109.47387 * 64.58207 * 3 2 1 14 14 C 1.34777 * 120.00308 * 275.00258 * 13 3 2 15 15 O 1.21364 * 119.99731 * 359.97438 * 14 13 3 16 16 C 1.49347 * 120.00416 * 179.97438 * 14 13 3 17 17 O 1.21377 * 119.99853 * 359.97438 * 16 14 13 18 18 N 1.34777 * 120.00416 * 180.02562 * 16 14 13 19 19 C 1.39713 * 120.00489 * 185.21479 * 18 16 14 20 20 C 1.39003 * 120.04166 * 213.52029 * 19 18 16 21 21 C 1.38131 * 120.07542 * 179.69391 * 20 19 18 22 22 C 1.38181 * 120.14661 * 0.60047 * 21 20 19 23 23 C 1.38958 * 120.07582 * 359.67335 * 22 21 20 24 24 N 1.39674 * 120.03535 * 180.02562 * 23 22 21 25 25 C 1.48532 * 111.00000 * 117.38133 * 24 23 22 26 26 C 1.54938 * 103.22882 * 159.72187 * 25 24 23 27 27 C 1.54595 * 102.91936 * 322.58550 * 26 25 24 28 28 C 1.47899 * 111.00233 * 234.78045 * 24 23 22 29 29 C 1.38779 * 120.03767 * 33.79065 * 19 18 16 30 30 H 1.09000 * 109.47033 * 299.99748 * 1 2 3 31 31 H 1.08999 * 109.47018 * 60.00348 * 1 2 3 32 32 H 1.09000 * 109.47210 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47474 * 239.99623 * 2 1 3 34 34 H 1.09000 * 109.47530 * 120.00222 * 2 1 3 35 35 H 0.97009 * 119.99961 * 354.93621 * 8 7 5 36 36 H 0.97003 * 120.00031 * 94.99541 * 13 3 2 37 37 H 0.96999 * 119.99439 * 5.21495 * 18 16 14 38 38 H 1.08001 * 119.96430 * 359.97301 * 20 19 18 39 39 H 1.07998 * 119.92895 * 180.29652 * 21 20 19 40 40 H 1.08003 * 119.96282 * 179.69967 * 22 21 20 41 41 H 1.09000 * 110.66873 * 278.15877 * 25 24 23 42 42 H 1.09003 * 110.66604 * 41.28542 * 25 24 23 43 43 H 1.08997 * 110.71924 * 204.22992 * 26 25 24 44 44 H 1.08994 * 110.72289 * 80.94479 * 26 25 24 45 45 H 1.08994 * 110.30914 * 263.03875 * 27 26 25 46 46 H 1.09000 * 110.30490 * 140.87476 * 27 26 25 47 47 H 1.09003 * 109.91748 * 333.50872 * 28 24 23 48 48 H 1.08998 * 109.92330 * 94.80195 * 28 24 23 49 49 H 1.07998 * 120.07618 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6111 1.9795 -0.8461 5 6 3.5428 1.4440 -0.1135 6 1 4.1457 1.8095 0.7045 7 6 4.1478 0.9787 -1.2617 8 7 5.4199 0.6457 -1.2460 9 14 3.1606 0.8214 -2.8397 10 1 4.0358 0.3028 -3.9216 11 1 2.0298 -0.1168 -2.6247 12 1 2.6316 2.1536 -3.2276 13 7 1.6438 2.1005 1.2475 14 6 0.4258 2.6677 1.3529 15 8 -0.3428 2.6336 0.4142 16 6 0.0217 3.3381 2.6249 17 8 0.7901 3.3717 3.5638 18 7 -1.1966 3.9048 2.7305 19 6 -1.5346 4.6256 3.8786 20 6 -2.8440 4.6174 4.3450 21 6 -3.1777 5.3247 5.4836 22 6 -2.2144 6.0525 6.1557 23 6 -0.9047 6.0696 5.6917 24 7 0.0685 6.8051 6.3721 25 6 1.1353 5.9164 6.8995 26 6 2.3237 6.8846 7.1256 27 6 2.2122 7.8544 5.9268 28 6 0.7470 7.7544 5.4634 29 6 -0.5646 5.3551 4.5516 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8899 35 1 5.9508 0.7960 -0.4481 36 1 2.2582 2.1279 1.9977 37 1 -1.8386 3.8122 2.0094 38 1 -3.6005 4.0538 3.8191 39 1 -4.1948 5.3129 5.8466 40 1 -2.4797 6.6084 7.0429 41 1 0.8262 5.4606 7.8401 42 1 1.3959 5.1519 6.1676 43 1 3.2707 6.3456 7.0989 44 1 2.2103 7.4211 8.0675 45 1 2.8842 7.5451 5.1263 46 1 2.4409 8.8726 6.2415 47 1 0.7060 7.3824 4.4397 48 1 0.2705 8.7328 5.5251 49 1 0.4527 5.3664 4.1892 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128456412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:22 Heat of formation + Delta-G solvation = -53.379857 kcal Electronic energy + Delta-G solvation = -30450.005886 eV Core-core repulsion = 26376.155861 eV Total energy + Delta-G solvation = -4073.850026 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.29748 -41.16432 -40.04590 -38.69511 -37.37284 -36.03063 -34.52630 -33.43435 -33.21019 -31.05805 -29.92082 -29.47606 -29.35319 -26.41307 -24.53006 -24.20281 -23.21213 -21.99313 -21.90013 -21.75776 -21.34603 -20.31065 -19.26686 -18.69329 -17.94032 -17.46928 -17.16201 -16.86670 -16.81387 -16.49468 -16.07824 -15.60548 -15.33874 -15.14389 -15.09344 -14.70784 -14.55563 -14.50157 -14.28972 -14.09451 -13.88600 -13.63452 -13.49992 -13.16722 -12.98207 -12.72219 -12.65507 -12.51617 -12.43429 -12.32478 -12.27684 -12.16273 -11.81764 -11.57175 -11.52850 -11.46459 -11.18428 -10.76358 -10.50825 -10.08341 -9.82552 -9.68213 -9.26896 -8.86588 -6.50901 -0.13097 0.23724 0.56060 1.21678 1.44933 1.50656 1.69536 2.02278 2.40130 2.58761 2.68371 2.83934 2.96130 3.33493 3.61625 3.80450 3.90194 3.97284 4.09020 4.23656 4.24705 4.25530 4.34225 4.37447 4.42947 4.45852 4.51006 4.60715 4.74364 4.75679 4.80987 4.85371 4.95899 5.04335 5.04790 5.09883 5.13387 5.16716 5.18663 5.20061 5.35491 5.41035 5.44835 5.46891 5.56752 5.64893 5.78730 5.87208 5.94478 6.30621 6.39067 6.44361 6.63616 6.90960 7.26332 8.53573 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.002787 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.239303 B =10044.648059 C =11523.542991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.138 4.138 3 C 0.251 3.749 4 H 0.038 0.962 5 C -0.623 4.623 6 H 0.034 0.966 7 C -0.003 4.003 8 N -0.923 5.923 9 Si 1.072 2.928 10 H -0.283 1.283 11 H -0.238 1.238 12 H -0.269 1.269 13 N -0.669 5.669 14 C 0.500 3.500 15 O -0.537 6.537 16 C 0.512 3.488 17 O -0.524 6.524 18 N -0.633 5.633 19 C 0.131 3.869 20 C -0.138 4.138 21 C -0.084 4.084 22 C -0.108 4.108 23 C 0.083 3.917 24 N -0.479 5.479 25 C 0.033 3.967 26 C -0.118 4.118 27 C -0.131 4.131 28 C 0.034 3.966 29 C -0.167 4.167 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.257 0.743 36 H 0.406 0.594 37 H 0.432 0.568 38 H 0.155 0.845 39 H 0.169 0.831 40 H 0.148 0.852 41 H 0.091 0.909 42 H 0.030 0.970 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.032 0.968 48 H 0.093 0.907 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.975 12.072 15.583 26.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.176 4.176 3 C 0.148 3.852 4 H 0.056 0.944 5 C -0.661 4.661 6 H 0.053 0.947 7 C -0.204 4.204 8 N -0.557 5.557 9 Si 0.893 3.107 10 H -0.208 1.208 11 H -0.162 1.162 12 H -0.195 1.195 13 N -0.318 5.318 14 C 0.279 3.721 15 O -0.415 6.415 16 C 0.295 3.705 17 O -0.400 6.400 18 N -0.281 5.281 19 C 0.037 3.963 20 C -0.158 4.158 21 C -0.103 4.103 22 C -0.127 4.127 23 C -0.012 4.012 24 N -0.201 5.201 25 C -0.093 4.093 26 C -0.156 4.156 27 C -0.169 4.169 28 C -0.093 4.093 29 C -0.189 4.189 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.241 0.759 37 H 0.272 0.728 38 H 0.173 0.827 39 H 0.187 0.813 40 H 0.166 0.834 41 H 0.109 0.891 42 H 0.048 0.952 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.079 0.921 46 H 0.112 0.888 47 H 0.050 0.950 48 H 0.112 0.888 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.062 11.807 14.381 25.932 hybrid contribution 1.394 -0.043 0.817 1.617 sum -16.667 11.764 15.198 25.439 Atomic orbital electron populations 1.21798 0.95000 1.00985 1.01530 1.22264 0.95840 0.97642 1.01896 1.19009 0.93704 0.90046 0.82468 0.94440 1.22233 0.91275 1.48752 1.03817 0.94740 1.26958 0.97413 0.91523 1.04523 1.70986 1.09494 1.42231 1.33013 0.83725 0.75517 0.78949 0.72492 1.20842 1.16220 1.19470 1.46054 1.14608 1.53125 1.18039 1.19922 0.83494 0.80654 0.87987 1.90722 1.51717 1.59509 1.39598 1.20365 0.82832 0.79325 0.88024 1.90755 1.52003 1.57767 1.39455 1.43080 1.15232 1.49896 1.19846 1.17849 0.95118 0.94443 0.88870 1.21295 0.94004 1.02200 0.98272 1.21323 1.00876 0.94664 0.93397 1.21296 0.90499 0.99869 1.01042 1.19078 0.94189 0.95440 0.92507 1.62622 1.11162 1.14619 1.31668 1.23393 0.91057 0.94824 0.99985 1.22491 0.97213 0.96563 0.99292 1.22431 0.94749 1.01598 0.98140 1.23052 0.94853 0.97354 0.94023 1.21535 0.99406 0.99072 0.98933 0.93788 0.92964 0.92051 0.91514 0.92977 0.93345 0.75870 0.72786 0.82714 0.81346 0.83391 0.89098 0.95152 0.90425 0.89098 0.92141 0.88845 0.94959 0.88827 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 8.51 71.98 0.61 -4.23 16 2 C -0.14 -5.78 5.30 30.59 0.16 -5.61 16 3 C 0.25 11.62 1.83 44.25 0.08 11.70 16 4 H 0.04 1.82 6.23 -2.38 -0.01 1.80 16 5 C -0.62 -33.93 9.00 25.60 0.23 -33.70 16 6 H 0.03 2.03 7.96 -2.91 -0.02 2.01 16 7 C 0.00 -0.17 5.30 84.66 0.45 0.28 16 8 N -0.92 -55.54 13.69 21.45 0.29 -55.25 16 9 Si 1.07 48.31 26.32 68.60 1.81 50.12 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.24 -9.51 5.73 99.48 0.57 -8.94 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 13 N -0.67 -27.58 5.01 -447.53 -2.24 -29.82 16 14 C 0.50 18.45 6.43 87.24 0.56 19.02 16 15 O -0.54 -20.45 13.62 -3.29 -0.04 -20.50 16 16 C 0.51 16.78 7.62 87.24 0.66 17.44 16 17 O -0.52 -19.30 14.19 -3.33 -0.05 -19.35 16 18 N -0.63 -16.30 5.32 -304.91 -1.62 -17.92 16 19 C 0.13 3.18 6.26 38.20 0.24 3.42 16 20 C -0.14 -2.35 9.96 22.43 0.22 -2.12 16 21 C -0.08 -1.17 10.03 22.23 0.22 -0.95 16 22 C -0.11 -1.88 9.97 22.43 0.22 -1.66 16 23 C 0.08 1.90 4.86 38.20 0.19 2.09 16 24 N -0.48 -10.40 5.27 -682.86 -3.60 -14.00 16 25 C 0.03 0.73 6.43 86.65 0.56 1.28 16 26 C -0.12 -2.02 7.06 31.80 0.22 -1.80 16 27 C -0.13 -2.31 6.93 31.47 0.22 -2.09 16 28 C 0.03 0.69 6.49 86.45 0.56 1.25 16 29 C -0.17 -4.53 6.49 22.53 0.15 -4.38 16 30 H 0.04 1.55 5.66 -2.39 -0.01 1.54 16 31 H 0.05 1.88 7.82 -2.39 -0.02 1.87 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 2.87 4.88 -2.39 -0.01 2.86 16 34 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.26 15.65 8.73 -92.70 -0.81 14.84 16 36 H 0.41 16.63 8.00 -92.71 -0.74 15.89 16 37 H 0.43 9.24 8.30 -92.71 -0.77 8.48 16 38 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 39 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 40 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.03 0.83 6.99 -2.39 -0.02 0.81 16 43 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.03 0.78 6.34 -2.39 -0.02 0.76 16 48 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.11 3.44 5.43 -2.91 -0.02 3.43 16 Total: -1.00 -66.61 387.46 -0.59 -67.20 By element: Atomic # 1 Polarization: 40.29 SS G_CDS: -0.69 Total: 39.60 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 5.56 Total: -0.07 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -7.17 Total: -116.99 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -0.09 Total: -39.85 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 1.81 Total: 50.12 kcal Total: -66.61 -0.59 -67.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128456412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.823 kcal (2) G-P(sol) polarization free energy of solvation -66.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds