Wall clock time and date at job start Wed Apr 1 2020 03:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46847 * 2 1 4 4 N 1.46505 * 109.46918 * 119.99849 * 2 1 3 5 5 C 1.34768 * 120.00020 * 84.99975 * 4 2 1 6 6 O 1.21535 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.48039 * 119.99950 * 179.97438 * 5 4 2 8 8 C 1.39555 * 120.00043 * 180.02562 * 7 5 4 9 9 C 1.37816 * 119.99825 * 180.02562 * 8 7 5 10 10 C 1.39546 * 120.00244 * 359.95425 * 9 8 7 11 11 C 1.48039 * 120.00211 * 180.02562 * 10 9 8 12 12 O 1.21531 * 119.99775 * 328.11939 * 11 10 9 13 13 N 1.34778 * 119.99989 * 148.12091 * 11 10 9 14 14 C 1.46967 * 120.59219 * 0.41235 * 13 11 10 15 15 C 1.53372 * 108.63505 * 235.20478 * 14 13 11 16 16 N 1.46962 * 108.63443 * 310.58105 * 15 14 13 17 17 C 1.36938 * 120.59182 * 235.20449 * 16 15 14 18 18 H 1.07996 * 120.00111 * 152.14470 * 17 16 15 19 19 C 1.38810 * 119.99972 * 331.85629 * 17 16 15 20 20 N 1.31619 * 120.00154 * 344.03355 * 19 17 16 21 21 Si 1.86800 * 120.00061 * 164.02950 * 19 17 16 22 22 H 1.48498 * 109.47233 * 60.00226 * 21 19 17 23 23 H 1.48496 * 109.47326 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47152 * 300.00444 * 21 19 17 25 25 C 1.46963 * 118.81445 * 55.47476 * 16 15 14 26 26 C 1.46962 * 120.59160 * 180.39331 * 13 11 10 27 27 C 1.39564 * 119.99978 * 0.27978 * 10 9 8 28 28 C 1.37814 * 119.99735 * 359.52720 * 27 10 9 29 29 H 1.09003 * 109.46923 * 60.00442 * 1 2 3 30 30 H 1.08995 * 109.46895 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46832 * 300.00356 * 1 2 3 32 32 H 1.09000 * 109.46832 * 239.99644 * 2 1 3 33 33 H 1.09005 * 109.46795 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46998 * 299.99512 * 3 2 1 35 35 H 1.08993 * 109.47368 * 60.00238 * 3 2 1 36 36 H 0.96996 * 119.99508 * 264.99837 * 4 2 1 37 37 H 1.08001 * 120.00013 * 359.97438 * 8 7 5 38 38 H 1.08000 * 119.99516 * 179.97438 * 9 8 7 39 39 H 1.09004 * 109.60303 * 115.46392 * 14 13 11 40 40 H 1.09002 * 109.61124 * 354.95279 * 14 13 11 41 41 H 1.08996 * 109.60590 * 190.83353 * 15 14 13 42 42 H 1.08997 * 109.74552 * 70.40918 * 15 14 13 43 43 H 0.97000 * 120.00510 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.60854 * 64.26508 * 25 16 15 45 45 H 1.09003 * 109.60947 * 184.77265 * 25 16 15 46 46 H 1.08999 * 109.61053 * 244.53626 * 26 13 11 47 47 H 1.09000 * 109.61117 * 4.88299 * 26 13 11 48 48 H 1.08003 * 119.99731 * 179.72912 * 27 10 9 49 49 H 1.07997 * 120.00174 * 180.21753 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -2.0321 1.1945 6 8 1.8585 -2.6690 0.2004 7 6 2.6410 -2.7299 2.4031 8 6 2.7748 -4.1190 2.4011 9 6 3.2341 -4.7686 3.5265 10 6 3.5664 -4.0373 4.6675 11 6 4.0603 -4.7350 5.8761 12 8 3.6675 -5.8558 6.1339 13 7 4.9456 -4.1272 6.6906 14 6 5.4224 -2.7686 6.3962 15 6 6.9549 -2.7886 6.3394 16 7 7.4604 -3.4725 7.5380 17 6 8.3599 -2.8550 8.3655 18 1 8.3944 -3.1125 9.4137 19 6 9.2314 -1.9023 7.8558 20 7 9.4207 -1.8117 6.5565 21 14 10.1354 -0.7488 9.0140 22 1 10.9763 -1.5420 9.9461 23 1 10.9983 0.1677 8.2262 24 1 9.1498 0.0455 9.7907 25 6 6.9879 -4.8333 7.8293 26 6 5.4511 -4.8112 7.8892 27 6 3.4280 -2.6485 4.6712 28 6 2.9724 -1.9986 3.5445 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 2.2490 -0.1822 1.9894 37 1 2.5175 -4.6851 1.5180 38 1 3.3372 -5.8437 3.5250 39 1 5.0943 -2.0877 7.1816 40 1 5.0249 -2.4415 5.4354 41 1 7.3333 -1.7667 6.3143 42 1 7.2834 -3.3224 5.4477 43 1 10.0294 -1.1458 6.2002 44 1 7.3162 -5.5111 7.0412 45 1 7.3883 -5.1621 8.7883 46 1 5.1251 -4.2756 8.7808 47 1 5.0702 -5.8321 7.9158 48 1 3.6810 -2.0830 5.5558 49 1 2.8686 -0.9236 3.5461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153415413.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:57 Heat of formation + Delta-G solvation = 3.836580 kcal Electronic energy + Delta-G solvation = -30182.311535 eV Core-core repulsion = 26110.942600 eV Total energy + Delta-G solvation = -4071.368935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.74848 -39.91365 -38.08669 -36.85572 -36.25247 -34.07670 -32.67288 -32.00020 -30.92542 -30.60752 -29.97048 -27.60556 -27.19221 -25.11148 -23.74382 -23.40718 -22.35870 -21.78010 -21.02273 -20.41117 -19.21417 -18.07463 -17.46696 -16.73150 -16.29830 -15.92445 -15.39189 -15.25884 -14.98777 -14.89852 -14.54980 -14.46533 -14.21830 -14.06400 -13.74850 -13.51877 -13.38721 -13.33784 -13.15674 -12.75086 -12.70033 -12.55833 -12.40779 -12.31295 -11.76193 -11.64815 -11.46882 -11.34419 -11.06935 -10.87089 -10.81032 -10.56923 -10.30383 -10.19519 -10.09645 -9.92509 -9.59766 -9.45974 -9.15552 -8.93686 -8.65147 -8.34319 -6.77615 -5.90890 -3.36350 0.40535 1.16335 2.42703 2.81981 3.07905 3.30170 3.30583 3.36776 3.37927 3.77001 4.31107 4.39156 4.50811 4.53305 4.66421 4.68828 4.75657 4.86233 5.10200 5.18205 5.20916 5.23097 5.27827 5.30029 5.39215 5.49463 5.55299 5.69810 5.71308 5.73976 5.80239 5.82960 5.87631 5.97168 6.00186 6.07306 6.13137 6.18886 6.20183 6.29993 6.36176 6.59678 6.72080 6.84601 7.13134 7.19052 7.40654 7.65385 7.77727 7.93427 8.29907 8.39220 9.06256 9.68308 10.25134 11.16453 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011606 B = 0.002695 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.927749 B =10388.404041 C =12301.332817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.136 3.864 3 C -0.162 4.162 4 N -0.724 5.724 5 C 0.562 3.438 6 O -0.536 6.536 7 C -0.122 4.122 8 C -0.067 4.067 9 C -0.073 4.073 10 C -0.092 4.092 11 C 0.548 3.452 12 O -0.551 6.551 13 N -0.585 5.585 14 C 0.047 3.953 15 C 0.157 3.843 16 N -0.592 5.592 17 C -0.256 4.256 18 H 0.068 0.932 19 C 0.003 3.997 20 N -0.904 5.904 21 Si 0.906 3.094 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.131 3.869 26 C 0.095 3.905 27 C -0.107 4.107 28 C -0.094 4.094 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.401 0.599 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.023 0.977 43 H 0.256 0.744 44 H 0.025 0.975 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.155 0.845 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.940 5.682 -9.645 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 C -0.220 4.220 4 N -0.376 5.376 5 C 0.350 3.650 6 O -0.413 6.413 7 C -0.126 4.126 8 C -0.085 4.085 9 C -0.092 4.092 10 C -0.095 4.095 11 C 0.336 3.664 12 O -0.431 6.431 13 N -0.316 5.316 14 C -0.076 4.076 15 C 0.030 3.970 16 N -0.314 5.314 17 C -0.385 4.385 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.548 5.548 21 Si 0.735 3.265 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.004 3.996 26 C -0.029 4.029 27 C -0.125 4.125 28 C -0.113 4.113 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.236 0.764 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.042 0.958 43 H 0.066 0.934 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.102 0.898 48 H 0.173 0.827 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.189 4.785 -10.293 19.772 hybrid contribution 0.786 0.999 0.969 1.598 sum -15.403 5.784 -9.325 18.912 Atomic orbital electron populations 1.22196 0.95179 1.02743 1.02138 1.20972 0.94238 0.92921 0.88711 1.22093 1.02018 0.94827 1.03038 1.46048 1.67681 1.06850 1.17056 1.18355 0.77195 0.82031 0.87465 1.90762 1.50061 1.66052 1.34448 1.20020 1.03798 0.94657 0.94075 1.21199 0.96040 0.92916 0.98392 1.21209 0.96039 1.00814 0.91123 1.20211 1.00284 0.93989 0.95032 1.18339 0.79565 0.85613 0.82911 1.90731 1.59132 1.18996 1.74191 1.47969 1.41482 1.17230 1.24885 1.23606 1.00675 0.81964 1.01346 1.21224 0.86391 1.00666 0.88721 1.44024 1.49372 1.10608 1.27438 1.19181 1.10608 1.18516 0.90198 0.91444 1.25085 0.97116 1.01556 0.95812 1.69982 1.38129 1.35926 1.10733 0.86320 0.79343 0.80751 0.80044 1.20812 1.21577 1.20946 1.21396 0.90390 0.88375 0.99451 1.22344 0.97216 0.97507 0.85817 1.21812 0.97318 0.93623 0.99706 1.21197 0.97981 0.99707 0.92414 0.91566 0.92003 0.92406 0.89269 0.91703 0.90823 0.91931 0.76357 0.84119 0.84253 0.91350 0.88335 0.87871 0.95843 0.93387 0.95750 0.91371 0.91640 0.89837 0.82737 0.85155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.48 37.16 0.35 -0.80 16 2 C 0.14 1.01 3.19 -67.93 -0.22 0.80 16 3 C -0.16 -0.83 9.38 37.16 0.35 -0.48 16 4 N -0.72 -6.02 5.03 -54.68 -0.27 -6.30 16 5 C 0.56 6.51 7.74 -12.24 -0.09 6.42 16 6 O -0.54 -7.90 16.00 5.33 0.09 -7.81 16 7 C -0.12 -1.40 5.88 -104.90 -0.62 -2.01 16 8 C -0.07 -0.81 9.58 -39.24 -0.38 -1.19 16 9 C -0.07 -0.97 9.58 -39.25 -0.38 -1.35 16 10 C -0.09 -1.32 5.53 -104.90 -0.58 -1.90 16 11 C 0.55 9.55 7.46 -12.24 -0.09 9.46 16 12 O -0.55 -10.99 16.15 5.34 0.09 -10.90 16 13 N -0.58 -10.29 2.95 -173.25 -0.51 -10.80 16 14 C 0.05 0.80 5.06 -3.59 -0.02 0.78 16 15 C 0.16 3.43 5.50 -3.60 -0.02 3.41 16 16 N -0.59 -14.01 2.96 -171.77 -0.51 -14.52 16 17 C -0.26 -6.61 9.59 -15.06 -0.14 -6.76 16 18 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 19 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 20 N -0.90 -24.77 11.09 55.49 0.62 -24.15 16 21 Si 0.91 20.58 29.58 -169.99 -5.03 15.55 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 C 0.13 2.68 6.70 -3.37 -0.02 2.65 16 26 C 0.09 1.70 6.61 -3.37 -0.02 1.67 16 27 C -0.11 -1.26 7.42 -39.24 -0.29 -1.55 16 28 C -0.09 -0.93 9.53 -39.25 -0.37 -1.31 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.81 7.58 -51.93 -0.39 0.42 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.40 2.39 6.62 -40.82 -0.27 2.12 16 37 H 0.14 1.62 7.64 -52.49 -0.40 1.22 16 38 H 0.14 1.81 7.94 -52.49 -0.42 1.39 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.10 1.41 3.52 -53.82 -0.19 1.22 16 41 H 0.10 2.48 5.93 -51.93 -0.31 2.17 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.02 0.53 8.14 -51.92 -0.42 0.10 16 45 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 46 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.08 1.46 6.99 -51.93 -0.36 1.10 16 48 H 0.16 1.68 5.32 -52.48 -0.28 1.40 16 49 H 0.13 0.84 6.39 -52.49 -0.34 0.50 16 LS Contribution 391.75 15.07 5.90 5.90 Total: -1.00 -32.44 391.75 -9.41 -41.85 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.14 Total: 3.35 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -2.63 Total: 7.84 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.68 Total: -55.77 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.17 Total: -18.71 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.44 -9.41 -41.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153415413.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.688 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds