Wall clock time and date at job start Wed Apr 1 2020 03:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46847 * 2 1 4 4 N 1.46505 * 109.46918 * 119.99849 * 2 1 3 5 5 C 1.34768 * 120.00020 * 84.99975 * 4 2 1 6 6 O 1.21535 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.48039 * 119.99950 * 179.97438 * 5 4 2 8 8 C 1.39555 * 120.00043 * 180.02562 * 7 5 4 9 9 C 1.37816 * 119.99825 * 180.02562 * 8 7 5 10 10 C 1.39546 * 120.00244 * 359.95425 * 9 8 7 11 11 C 1.48039 * 120.00211 * 180.02562 * 10 9 8 12 12 O 1.21531 * 119.99775 * 328.11939 * 11 10 9 13 13 N 1.34778 * 119.99989 * 148.12091 * 11 10 9 14 14 C 1.46967 * 120.59219 * 0.41235 * 13 11 10 15 15 C 1.53372 * 108.63505 * 235.20478 * 14 13 11 16 16 N 1.46962 * 108.63443 * 310.58105 * 15 14 13 17 17 C 1.36938 * 120.59182 * 235.20449 * 16 15 14 18 18 H 1.07996 * 120.00111 * 152.14470 * 17 16 15 19 19 C 1.38810 * 119.99972 * 331.85629 * 17 16 15 20 20 N 1.31619 * 120.00154 * 344.03355 * 19 17 16 21 21 Si 1.86800 * 120.00061 * 164.02950 * 19 17 16 22 22 H 1.48498 * 109.47233 * 60.00226 * 21 19 17 23 23 H 1.48496 * 109.47326 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47152 * 300.00444 * 21 19 17 25 25 C 1.46963 * 118.81445 * 55.47476 * 16 15 14 26 26 C 1.46962 * 120.59160 * 180.39331 * 13 11 10 27 27 C 1.39564 * 119.99978 * 0.27978 * 10 9 8 28 28 C 1.37814 * 119.99735 * 359.52720 * 27 10 9 29 29 H 1.09003 * 109.46923 * 60.00442 * 1 2 3 30 30 H 1.08995 * 109.46895 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46832 * 300.00356 * 1 2 3 32 32 H 1.09000 * 109.46832 * 239.99644 * 2 1 3 33 33 H 1.09005 * 109.46795 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46998 * 299.99512 * 3 2 1 35 35 H 1.08993 * 109.47368 * 60.00238 * 3 2 1 36 36 H 0.96996 * 119.99508 * 264.99837 * 4 2 1 37 37 H 1.08001 * 120.00013 * 359.97438 * 8 7 5 38 38 H 1.08000 * 119.99516 * 179.97438 * 9 8 7 39 39 H 1.09004 * 109.60303 * 115.46392 * 14 13 11 40 40 H 1.09002 * 109.61124 * 354.95279 * 14 13 11 41 41 H 1.08996 * 109.60590 * 190.83353 * 15 14 13 42 42 H 1.08997 * 109.74552 * 70.40918 * 15 14 13 43 43 H 0.97000 * 120.00510 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.60854 * 64.26508 * 25 16 15 45 45 H 1.09003 * 109.60947 * 184.77265 * 25 16 15 46 46 H 1.08999 * 109.61053 * 244.53626 * 26 13 11 47 47 H 1.09000 * 109.61117 * 4.88299 * 26 13 11 48 48 H 1.08003 * 119.99731 * 179.72912 * 27 10 9 49 49 H 1.07997 * 120.00174 * 180.21753 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -2.0321 1.1945 6 8 1.8585 -2.6690 0.2004 7 6 2.6410 -2.7299 2.4031 8 6 2.7748 -4.1190 2.4011 9 6 3.2341 -4.7686 3.5265 10 6 3.5664 -4.0373 4.6675 11 6 4.0603 -4.7350 5.8761 12 8 3.6675 -5.8558 6.1339 13 7 4.9456 -4.1272 6.6906 14 6 5.4224 -2.7686 6.3962 15 6 6.9549 -2.7886 6.3394 16 7 7.4604 -3.4725 7.5380 17 6 8.3599 -2.8550 8.3655 18 1 8.3944 -3.1125 9.4137 19 6 9.2314 -1.9023 7.8558 20 7 9.4207 -1.8117 6.5565 21 14 10.1354 -0.7488 9.0140 22 1 10.9763 -1.5420 9.9461 23 1 10.9983 0.1677 8.2262 24 1 9.1498 0.0455 9.7907 25 6 6.9879 -4.8333 7.8293 26 6 5.4511 -4.8112 7.8892 27 6 3.4280 -2.6485 4.6712 28 6 2.9724 -1.9986 3.5445 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 2.2490 -0.1822 1.9894 37 1 2.5175 -4.6851 1.5180 38 1 3.3372 -5.8437 3.5250 39 1 5.0943 -2.0877 7.1816 40 1 5.0249 -2.4415 5.4354 41 1 7.3333 -1.7667 6.3143 42 1 7.2834 -3.3224 5.4477 43 1 10.0294 -1.1458 6.2002 44 1 7.3162 -5.5111 7.0412 45 1 7.3883 -5.1621 8.7883 46 1 5.1251 -4.2756 8.7808 47 1 5.0702 -5.8321 7.9158 48 1 3.6810 -2.0830 5.5558 49 1 2.8686 -0.9236 3.5461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153415413.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:56 Heat of formation + Delta-G solvation = -16.179264 kcal Electronic energy + Delta-G solvation = -30183.179487 eV Core-core repulsion = 26110.942600 eV Total energy + Delta-G solvation = -4072.236887 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.84567 -41.00678 -39.18004 -38.42062 -37.01176 -35.73971 -33.80665 -33.21745 -32.41239 -31.56615 -31.32638 -28.83219 -28.07597 -26.41095 -25.22391 -24.76224 -23.51516 -22.82479 -22.06690 -21.47597 -20.61665 -19.14939 -18.83056 -17.89451 -17.66483 -17.16049 -16.66943 -16.50365 -16.24379 -15.98998 -15.65245 -15.56956 -15.42096 -15.23933 -15.16218 -14.99102 -14.72843 -14.47759 -14.10113 -13.90486 -13.58514 -13.53712 -13.30015 -13.15757 -13.03574 -12.95187 -12.63061 -12.51219 -12.33189 -12.28971 -12.18841 -12.02268 -11.89901 -11.74746 -11.66627 -11.19794 -10.91002 -10.58588 -10.31557 -10.08910 -9.96301 -9.84267 -8.65563 -7.86941 -5.36235 -0.60663 0.22936 1.35079 1.51890 1.52557 1.59759 1.82815 2.05799 2.07735 2.52582 2.75628 3.27394 3.30375 3.59312 3.62096 3.70975 3.81646 3.98075 4.15360 4.16170 4.21098 4.24243 4.26324 4.33928 4.36493 4.50400 4.56651 4.64309 4.74291 4.76032 4.77476 4.79543 4.86469 4.95070 5.00343 5.03227 5.06181 5.17650 5.19020 5.22833 5.29560 5.35244 5.49508 5.52011 5.60762 5.65055 5.66427 6.36159 6.38233 6.47356 7.01323 7.12082 7.13077 7.78967 8.32578 9.17676 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011606 B = 0.002695 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.927749 B =10388.404041 C =12301.332817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 C -0.155 4.155 4 N -0.707 5.707 5 C 0.559 3.441 6 O -0.574 6.574 7 C -0.122 4.122 8 C -0.071 4.071 9 C -0.080 4.080 10 C -0.113 4.113 11 C 0.548 3.452 12 O -0.581 6.581 13 N -0.590 5.590 14 C 0.063 3.937 15 C 0.162 3.838 16 N -0.609 5.609 17 C -0.265 4.265 18 H 0.070 0.930 19 C -0.045 4.045 20 N -0.933 5.933 21 Si 0.970 3.030 22 H -0.281 1.281 23 H -0.295 1.295 24 H -0.273 1.273 25 C 0.131 3.869 26 C 0.105 3.895 27 C -0.106 4.106 28 C -0.075 4.075 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.415 0.585 37 H 0.142 0.858 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.129 0.871 41 H 0.082 0.918 42 H -0.008 1.008 43 H 0.252 0.748 44 H 0.006 0.994 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.171 0.829 49 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.245 8.374 -9.148 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 C -0.212 4.212 4 N -0.360 5.360 5 C 0.347 3.653 6 O -0.455 6.455 7 C -0.126 4.126 8 C -0.090 4.090 9 C -0.099 4.099 10 C -0.116 4.116 11 C 0.338 3.662 12 O -0.463 6.463 13 N -0.320 5.320 14 C -0.059 4.059 15 C 0.036 3.964 16 N -0.332 5.332 17 C -0.395 4.395 18 H 0.088 0.912 19 C -0.241 4.241 20 N -0.579 5.579 21 Si 0.798 3.202 22 H -0.207 1.207 23 H -0.221 1.221 24 H -0.199 1.199 25 C 0.004 3.996 26 C -0.019 4.019 27 C -0.123 4.123 28 C -0.093 4.093 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.253 0.747 37 H 0.160 0.840 38 H 0.152 0.848 39 H 0.103 0.897 40 H 0.146 0.854 41 H 0.100 0.900 42 H 0.011 0.989 43 H 0.061 0.939 44 H 0.024 0.976 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.105 0.895 48 H 0.188 0.812 49 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -17.514 7.506 -9.773 21.415 hybrid contribution 1.172 0.124 0.738 1.390 sum -16.342 7.630 -9.036 20.173 Atomic orbital electron populations 1.22160 0.94657 1.01467 1.03552 1.21097 0.94647 0.94065 0.87474 1.22054 1.01830 0.92964 1.04402 1.45997 1.66220 1.05805 1.17959 1.18410 0.77017 0.82956 0.86900 1.90751 1.51949 1.67058 1.35721 1.20168 1.03305 0.94422 0.94677 1.21239 0.96025 0.93697 0.98010 1.21176 0.96616 1.00722 0.91414 1.20101 1.02203 0.95259 0.94027 1.18780 0.78942 0.85233 0.83268 1.90706 1.60236 1.20433 1.74959 1.48027 1.41610 1.17491 1.24894 1.23508 0.96720 0.81994 1.03698 1.21075 0.89743 0.98639 0.86990 1.44305 1.49498 1.11870 1.27561 1.19495 1.10809 1.18507 0.90681 0.91246 1.25793 0.98167 1.03047 0.97086 1.70139 1.38967 1.36524 1.12274 0.85318 0.78140 0.78693 0.78084 1.20718 1.22128 1.19914 1.21459 0.92334 0.86696 0.99096 1.22167 0.94938 0.98133 0.86684 1.21945 0.97149 0.92412 1.00835 1.21562 0.95518 1.01625 0.90623 0.90107 0.94553 0.91092 0.91378 0.91925 0.89681 0.90384 0.74658 0.84049 0.84847 0.89740 0.85386 0.89990 0.98938 0.93866 0.97577 0.90654 0.90294 0.89539 0.81224 0.80865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.48 71.98 0.68 -1.25 16 2 C 0.13 1.70 3.19 44.99 0.14 1.84 16 3 C -0.15 -1.10 9.38 71.98 0.68 -0.43 16 4 N -0.71 -9.96 5.03 -445.21 -2.24 -12.20 16 5 C 0.56 12.14 7.74 86.85 0.67 12.81 16 6 O -0.57 -16.86 16.00 -3.83 -0.06 -16.93 16 7 C -0.12 -2.56 5.88 -20.04 -0.12 -2.68 16 8 C -0.07 -1.70 9.58 22.49 0.22 -1.48 16 9 C -0.08 -2.14 9.58 22.49 0.22 -1.92 16 10 C -0.11 -3.13 5.53 -20.04 -0.11 -3.24 16 11 C 0.55 18.81 7.46 86.84 0.65 19.46 16 12 O -0.58 -23.30 16.15 -3.81 -0.06 -23.37 16 13 N -0.59 -20.19 2.95 -820.33 -2.42 -22.60 16 14 C 0.06 2.03 5.06 86.41 0.44 2.47 16 15 C 0.16 7.11 5.50 86.42 0.48 7.59 16 16 N -0.61 -28.95 2.96 -697.36 -2.07 -31.01 16 17 C -0.27 -13.68 9.59 84.03 0.81 -12.87 16 18 H 0.07 3.48 7.88 -2.91 -0.02 3.46 16 19 C -0.05 -2.37 4.95 84.86 0.42 -1.95 16 20 N -0.93 -51.81 11.09 21.65 0.24 -51.57 16 21 Si 0.97 42.07 29.58 68.60 2.03 44.10 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 23 H -0.30 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 25 C 0.13 5.37 6.70 86.56 0.58 5.95 16 26 C 0.10 3.66 6.61 86.57 0.57 4.24 16 27 C -0.11 -2.19 7.42 22.49 0.17 -2.02 16 28 C -0.08 -1.22 9.53 22.49 0.21 -1.01 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 1.20 7.58 -2.39 -0.02 1.18 16 33 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.42 3.27 6.62 -92.71 -0.61 2.65 16 37 H 0.14 3.32 7.64 -2.91 -0.02 3.29 16 38 H 0.13 3.60 7.94 -2.91 -0.02 3.58 16 39 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 40 H 0.13 3.36 3.52 -4.17 -0.01 3.34 16 41 H 0.08 3.97 5.93 -2.39 -0.01 3.96 16 42 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 43 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 44 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 45 H 0.08 2.92 7.93 -2.39 -0.02 2.90 16 46 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 47 H 0.09 2.99 6.99 -2.39 -0.02 2.97 16 48 H 0.17 3.02 5.32 -2.91 -0.02 3.00 16 49 H 0.17 1.28 6.39 -2.91 -0.02 1.27 16 Total: -1.00 -72.21 391.75 2.48 -69.74 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.36 Total: 18.33 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: 6.70 Total: 25.51 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -6.48 Total: -117.38 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -0.12 Total: -40.29 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -72.21 2.48 -69.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153415413.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.558 kcal (2) G-P(sol) polarization free energy of solvation -72.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds